| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,793,801 | G→T | 5.9% | intergenic (+67/+60) | PP_2445 → / ← PP_2446 | membrane protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,793,801 | 0 | G | T | 5.9% | 272.6 / 2.2 | 85 | intergenic (+67/+60) | PP_2445/PP_2446 | membrane protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (36/43); new base T (2/3); total (39/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
CTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCA > NC_002947/2793662‑2793939 | ctcGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCTTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa < 1:897760/150‑1 (MQ=255) ccgatctcTAGCGGGGTCCTCAACAGCCGGGCCCGTCTAGCTCGTGTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAATGGGCGCCTCGCGCCCCTCTTGCGTACAAGCCCGCTGCACAGGTAGTCGCG‑TGGCACTG‑GCAACGCGAAt < 2:19786/143‑1 (MQ=255) gACGGCTATCGAGGTCCTAAACATCCTGGCCCGTCGAGCGCGGTTGAAGCGTGAGGCGGCTGAAGGTCTCACAAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATAc < 1:1022117/150‑1 (MQ=255) cGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCt < 1:807761/150‑1 (MQ=37) gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt < 1:1567151/150‑1 (MQ=255) gCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt < 2:1896460/150‑1 (MQ=255) cTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgtg > 2:127549/1‑150 (MQ=255) cTATCGAGGTCCTCAACATCCTGGCCAGTCGCAAGCGTCTGTGGCGTGAGTCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgtg < 1:1140859/150‑1 (MQ=255) tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa < 1:1527103/141‑1 (MQ=255) tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa > 2:1527103/1‑141 (MQ=255) tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGc < 1:127549/150‑1 (MQ=255) tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGc > 2:1071653/1‑150 (MQ=255) tATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGCGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACCGGTATTCGCG‑TGGCACTG‑GCAACGCGAATaagatcgg > 1:19786/1‑143 (MQ=255) aTCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAATGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCa < 2:1884552/150‑1 (MQ=255) gAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa < 1:283940/137‑1 (MQ=255) gAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa > 2:283940/1‑137 (MQ=255) cTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTg > 2:2230562/1‑150 (MQ=255) cTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTg > 2:2096942/1‑150 (MQ=255) tCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgt < 1:1071653/150‑1 (MQ=255) aaCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtca < 1:2230562/150‑1 (MQ=255) aCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa < 1:875626/127‑1 (MQ=255) aCATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa > 2:875626/1‑127 (MQ=255) ccTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGc < 2:1035171/135‑1 (MQ=255) ccTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGc > 1:1035171/1‑135 (MQ=255) gCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTggg > 2:907509/1‑150 (MQ=255) tttGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCt < 2:2334274/150‑1 (MQ=255) tGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGa < 1:1734011/150‑1 (MQ=255) aGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt > 2:2137374/1‑107 (MQ=255) aGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCtgt < 1:2137374/107‑1 (MQ=255) gAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCt < 2:1720914/100‑1 (MQ=255) gAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCt > 1:1720914/1‑100 (MQ=255) gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc > 2:363338/1‑108 (MQ=255) gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc > 2:363754/1‑108 (MQ=255) gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc < 1:363754/108‑1 (MQ=255) gcggcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGc < 1:363338/108‑1 (MQ=255) gcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATAc < 2:2313975/92‑1 (MQ=255) gcTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATAc > 1:2313975/1‑92 (MQ=255) tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCtgt > 1:415022/1‑94 (MQ=18) tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TTGC‑CAGTGCCACGCGAATACCtgt < 2:415022/94‑1 (MQ=17) tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAAc > 2:1921774/1‑82 (MQ=255) tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAAc < 1:1921774/82‑1 (MQ=255) tGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACGTGTGGCGGTGATCGGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCgg > 2:63157/1‑150 (MQ=255) gAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa > 2:508357/1‑86 (MQ=255) gAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGaa < 1:508357/86‑1 (MQ=255) aaaGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCg < 1:2067872/108‑1 (MQ=255) aaaGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCg > 2:2067872/1‑108 (MQ=255) ggggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTc > 2:1156033/1‑150 (MQ=255) ggCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTTGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCtt > 1:1728138/1‑150 (MQ=255) tCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGc < 1:1156033/150‑1 (MQ=255) tctTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTg > 1:1796149/1‑150 (MQ=255) gCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcagt > 2:1303432/1‑64 (MQ=255) gCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcagt < 1:1303432/64‑1 (MQ=255) cccGCTGCACAGGTATTCGCGTTGCCAGT‑‑GCCACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt > 2:514509/1‑131 (MQ=25) cccGCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt < 1:514509/131‑1 (MQ=21) cccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg > 1:2192992/1‑150 (MQ=255) cccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCg > 1:1605843/1‑150 (MQ=255) ccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCgg < 1:907509/150‑1 (MQ=255) ccGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGAATTACCGTCTGTGGCTTGGCGGGTGCCTGCgg < 1:63157/150‑1 (MQ=255) cGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGt < 2:1601661/150‑1 (MQ=255) cGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGt < 1:2226157/150‑1 (MQ=255) gCTGCACAGGTATTCGCG‑TTGCCAGT‑GCCACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTg > 1:139355/1‑150 (MQ=37) tGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGt > 1:1736716/1‑114 (MQ=255) tGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGt < 2:1736716/114‑1 (MQ=255) acaGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAgg > 2:581697/1‑150 (MQ=255) aGGTATTCGCG‑TTGCCAGT‑GCCACGCTAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggtg < 2:139355/150‑1 (MQ=38) aGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGccgccg < 1:2361787/102‑1 (MQ=255) aGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGccgccg > 2:2361787/1‑102 (MQ=255) aGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAggtg < 2:1796149/150‑1 (MQ=255) tATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACt < 2:10495/112‑1 (MQ=255) tATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACt > 1:10495/1‑112 (MQ=255) aTTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGgtgt > 2:1844980/1‑150 (MQ=255) ttCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAg < 2:1010658/77‑1 (MQ=255) ttCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAg > 1:1010658/1‑77 (MQ=255) cgcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCa < 1:2374247/150‑1 (MQ=255) cgcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAAAACTGCGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCa < 1:2096942/150‑1 (MQ=255) gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcag < 2:917085/44‑1 (MQ=255) gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTgtcag > 1:917085/1‑44 (MQ=255) gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt > 2:2361904/1‑113 (MQ=255) gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCtgt < 1:2361904/113‑1 (MQ=255) gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCgg > 1:733910/1‑123 (MQ=255) gcg‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCgg < 2:733910/123‑1 (MQ=255) gCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTa > 2:340235/1‑100 (MQ=255) gCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTa < 1:340235/100‑1 (MQ=255) cACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCAcc > 2:1140440/1‑74 (MQ=255) cACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCAcc < 1:1140440/74‑1 (MQ=255) | CTCGACGGCTATCGAGGTCCTCAACATCCTGGCCCGTCGAGCGCGTTTGAAGCGTGAGGCGGCTGAAGGTTGATGTAAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAAGCCCGCTGCACAGGTATTCGCG‑TGGCACTG‑GCAACGCGAATACCTGTGCAGCGGGCTTGTCAGTCAGTGGGCTTCGGGAAATCCTGAGGTTAGCTCACCCCGGCATGCCGCCGGGGCCGTCTTACTGGCTGTGGCTTGGCGGGTGCCTGCGGTGGCAGGTGGTGTGCA > NC_002947/2793662‑2793939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |