| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,941,735 | C→T | 6.8% | intergenic (+12/+34) | PP_2574 → / ← PP_2575 | LysR family transcriptional regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,941,735 | 0 | C | T | 6.8% | 300.6 / 8.7 | 102 | intergenic (+12/+34) | PP_2574/PP_2575 | LysR family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (43/52); new base T (5/2); total (48/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.49e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
CTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTG > NC_002947/2941586‑2941882 | tcggCAATG‑TCGAGCATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGAGGGTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGcc > 2:2019233/3‑150 (MQ=255) ggCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCAc < 1:153183/150‑1 (MQ=255) aTTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGTGAAGATCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTa < 2:824595/150‑1 (MQ=255) ggTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtgg < 1:1802734/150‑1 (MQ=255) gTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgcggc > 1:1786069/1‑150 (MQ=255) gTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTACAGCTTTTCGATCCTGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtggc < 2:64455/150‑1 (MQ=255) ggcTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGAtt < 1:1729930/149‑1 (MQ=255) gcTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTg > 2:879047/1‑150 (MQ=255) gcTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTCTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCAAGACAGGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTg > 2:1999625/1‑150 (MQ=255) gggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg < 1:2012570/150‑1 (MQ=255) gggCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg < 2:895372/150‑1 (MQ=255) ctggctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCTACTCCTGCCGGTGTGGCAtg > 1:1705459/1‑128 (MQ=255) ctggctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCTACTCCTGCCGGGGTGGCAtg < 2:1705459/128‑1 (MQ=38) ctggctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGtt < 1:1779215/150‑1 (MQ=255) ctggctgCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGtt < 1:1784108/150‑1 (MQ=255) gcggcgTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTg < 1:207701/150‑1 (MQ=255) cggcgTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTgg < 1:518043/150‑1 (MQ=255) gcgTGGTTGAAGCGAGTCCAGCTGCACCAACTACAGCAGCTGATCGCAGATCTGGGTCGGGAAGAGCTGGCGAAGTTTAAACAGCCAGCGGTTGAGGCCACCCCGGCAGGAGTAGCATGGCGTGGCGCTTGATCAGGGGTGGGCCTggga > 1:551545/1‑148 (MQ=255) tGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCa < 1:1032409/105‑1 (MQ=255) tGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCa > 2:1032409/1‑105 (MQ=255) gTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg < 2:686706/133‑1 (MQ=255) gTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAggg > 1:686706/1‑133 (MQ=255) aaGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGccc > 2:455972/1‑150 (MQ=255) gCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCtt > 2:2060189/1‑150 (MQ=255) gCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGAATGCGCGTGGGGTGACCTGGTAGCCGCGCCCtt > 2:1508963/1‑150 (MQ=255) cGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTg < 1:1508963/150‑1 (MQ=255) aGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCa < 1:1244408/150‑1 (MQ=255) gTCCAGCTGACCAAACCGGCGCAGTTGTTCTTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCAAGCAATGCCACCCCGGCAGGAGTAGCAGAGGCTTTCTATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAg < 1:2224360/150‑1 (MQ=255) gCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGATCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAAc > 1:1662669/1‑150 (MQ=255) cTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAAcc > 1:2139740/1‑150 (MQ=255) aCCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAgg > 1:663121/1‑113 (MQ=255) aCCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAgg < 2:663121/113‑1 (MQ=255) ccAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCa > 2:2266191/1‑83 (MQ=255) ccAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCa < 1:2266191/83‑1 (MQ=255) cAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtggc < 1:2406336/100‑1 (MQ=255) cAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtggc > 2:2406336/1‑100 (MQ=255) cAAACCGGCGCAGTTGTACGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGCAGCATGGCCTGGCCATACCATAGGCGTGTATTCTCTATCCGCCCCCTTGCAGGCACCCGCTGt > 2:1232259/1‑150 (MQ=255) aaaCCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCa < 1:40136/137‑1 (MQ=255) aaaCCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCa > 2:40136/1‑137 (MQ=255) aaaCCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTa > 1:347537/1‑150 (MQ=255) aaCCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGa < 1:366997/115‑1 (MQ=255) aaCCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGa > 2:366997/1‑115 (MQ=255) gcATTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCACAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTgg < 1:870883/150‑1 (MQ=255) gcAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGa > 2:1601638/1‑108 (MQ=255) gcAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGa < 1:1601638/108‑1 (MQ=255) gcAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTgg < 1:879047/150‑1 (MQ=255) cAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGc > 2:2034819/1‑150 (MQ=255) ttgttCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATg < 2:68532/150‑1 (MQ=255) ttCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAAcc > 1:366051/1‑129 (MQ=255) ttCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAAcc < 2:366051/129‑1 (MQ=255) ttCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACATGGTCGCAGCTCTGTTGTAGGCAACCGCTGTAGGCACTGGCATGGGc > 1:2340272/1‑150 (MQ=255) tGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg < 1:2034819/150‑1 (MQ=255) tGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg > 1:830918/1‑150 (MQ=255) tGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg < 1:1661007/150‑1 (MQ=255) ggAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTggg > 1:747406/1‑150 (MQ=255) gAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCcg < 1:664662/106‑1 (MQ=255) gAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCcg > 2:664662/1‑106 (MQ=255) aGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGtt < 1:2019233/150‑1 (MQ=255) tttGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGCCTACCATGGCGGTGCGATTGCTCAGGGGTTGCCGTTGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTg < 2:687180/150‑1 (MQ=255) tttGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTg < 2:830918/150‑1 (MQ=255) tttGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTg < 1:673130/150‑1 (MQ=255) gggAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtgg < 1:540981/67‑1 (MQ=255) gggAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCAtggcgtgg > 2:540981/1‑67 (MQ=255) ggAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGt > 1:699114/1‑150 (MQ=255) ggAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGt > 2:179918/1‑150 (MQ=255) gAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg > 2:423543/1‑136 (MQ=255) gAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg < 1:423543/136‑1 (MQ=255) gAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTc < 1:1732070/150‑1 (MQ=255) agagCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCt < 2:347537/150‑1 (MQ=255) gCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGt < 1:2060189/150‑1 (MQ=255) cTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTc < 1:179918/150‑1 (MQ=255) cGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgc < 1:1224872/150‑1 (MQ=255) cGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTAGCAGGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgc < 1:1999625/150‑1 (MQ=255) aGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTa > 1:1994303/1‑104 (MQ=255) aGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTa < 2:1994303/104‑1 (MQ=255) gTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggt > 2:2010679/1‑150 (MQ=255) gTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAAGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggt > 1:1255033/1‑150 (MQ=255) ttCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg < 1:2118591/121‑1 (MQ=255) ttCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTgg > 2:2118591/1‑121 (MQ=255) ttCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGATGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtc > 2:64297/1‑150 (MQ=255) tCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcc < 2:551545/150‑1 (MQ=255) cTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctg > 1:1705589/1‑150 (MQ=255) tGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCGGCGCCCTTGCAGGCAACCGGTGTAGGCACTGGCATGGGCCTGGTTTTTGGCCTCGTCCTGGTAgagccggtcttgg > 2:1170739/1‑150 (MQ=255) tGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctgg > 2:361595/1‑150 (MQ=255) aaGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggc < 2:1509308/149‑1 (MQ=255) aaGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggc > 1:1509308/1‑149 (MQ=255) tGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccg < 1:1584394/150‑1 (MQ=255) aGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGc < 2:1523563/118‑1 (MQ=255) aGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGc > 1:1523563/1‑118 (MQ=255) gCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccggtc < 2:699114/150‑1 (MQ=255) ccACGCCATGCTACTCCTGCCGGGGTGGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTTGCCTCGTCCTGGTCgcgccggtcctggcgccggtc > 1:1332440/2‑150 (MQ=38) cACGCCATGCTACTCCTGCCGGGGTGGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccggtcc > 2:2025981/1‑150 (MQ=38) cACGCCATGCTACTCCTGCCGGGGTGGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccggtcc > 1:345412/1‑150 (MQ=38) cACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccggtcc > 1:2045284/1‑150 (MQ=255) aCGCCATGCTACTCCTGCCGGGGTGGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCgcgccggtcctggcgccggtcct > 1:308589/1‑150 (MQ=255) gCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGtt < 1:622462/108‑1 (MQ=255) gCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGtt > 2:622462/1‑108 (MQ=255) cATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTcc < 2:2314083/118‑1 (MQ=255) gCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTg < 2:1705589/150‑1 (MQ=255) gCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTg < 1:455972/150‑1 (MQ=255) | CTGGCAATGCTCGA‑CATTGCCGAGCCGGTGGCGCTGTCGGGGCTGGCTGCGGCGTGGTTGAAGCGAGTCCAGCTGACCAAACCGGCGCAGTTGTTCGTGGAGTTTTGTCGGGAAGAGCTGGCGAAGTTCCTGAAGTGAGCACGCCATGCCACCCCGGCAGGAGTAGCATGGCGTGGCGATTGCTCAGGGGTTGACCTGGTAGCCGCGCCCTTGCAGGCAACCGCTGTAGGCACTGGCATGGGCCTGGGTTTTGGCCTCGTCCTGGTCGCGCCGGTCCTGGCGCCGGTCCTGACGCTG > NC_002947/2941586‑2941882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |