Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,945,738 C→T 6.4% L158L (CTG→TTG)  PP_2578 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,945,7380CT 6.4% 266.2 / 4.9 90L158L (CTG→TTG) PP_2578hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (45/39);  new base T (4/2);  total (49/41)
Fisher's exact test for biased strand distribution p-value = 6.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTCGCGCAAGCCATT  >  NC_002947/2945591‑2945887
                                                                                                                                                    |                                                                                                                                                     
ttCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTg                                                                                                                                                     >  1:1681655/1‑150 (MQ=255)
 tCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTgc                                                                                                                                                    >  1:1147631/1‑150 (MQ=255)
    acacGGTACCCGGGCGCTACGCCTAGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAACGGCAGGTCGAGCT‑GAACTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCa                                                                                                                                                 >  2:898049/1‑150 (MQ=255)
      acGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAg                                                                                                                                               <  1:500802/150‑1 (MQ=255)
         gTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTg                                                                                                                                            <  1:1187666/150‑1 (MQ=255)
                ggCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACTTGCGCAGGTTGGcctg                                                                                                                                       >  1:1167292/1‑146 (MQ=255)
                ggCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACTTGCGCAGGTTGGcctg                                                                                                                                       <  2:1167292/148‑3 (MQ=255)
                ggCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAgg                                                                                                                                     >  1:1983240/1‑150 (MQ=255)
                    cTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGt                                                                                                                                 <  2:663181/150‑1 (MQ=255)
                     tACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTg                                                                                                                                >  2:589982/1‑150 (MQ=255)
                     tACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTg                                                                                                                                >  1:1501904/1‑150 (MQ=255)
                          ctggCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCgggg                                                                                                                           >  1:2400906/4‑150 (MQ=255)
                          cTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCgggg                                                                                                                           <  2:431141/150‑1 (MQ=255)
                          cTCGCTGGAGGCCGTCTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCgggg                                                                                                                           <  1:950044/150‑1 (MQ=255)
                           tCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAg                                                                                                                                               >  2:1893743/1‑129 (MQ=255)
                           tCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAg                                                                                                                                               <  1:1893743/129‑1 (MQ=255)
                             gCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAg                                                                                                                        >  1:1191234/1‑150 (MQ=255)
                                 gAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGcc                                                                                                                    <  2:1501904/150‑1 (MQ=255)
                                    gCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCgg                                                                                                                 >  1:625395/1‑150 (MQ=255)
                                      cGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCa                                                                                                               <  2:1977183/150‑1 (MQ=255)
                                         gtgGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAggg                                                                                                            <  2:1839886/150‑1 (MQ=255)
                                          tgGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGGCTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGt                                                                                                           >  1:1868259/1‑150 (MQ=255)
                                            gcgcCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGTCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAg                                                                                                         <  1:1665057/150‑1 (MQ=255)
                                              gcCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCAGAGGGGTGGCGGGGGAGTGCCCGGCAGGGTAGCt                                                                                                       >  2:395608/1‑150 (MQ=255)
                                               ccTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAgg                                                                                                                                     <  2:1969536/119‑1 (MQ=255)
                                               ccTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAgg                                                                                                                                     >  1:1969536/1‑119 (MQ=255)
                                                      cagcaAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCa                                                                                               <  2:123633/150‑1 (MQ=255)
                                                        gcaAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACTTGCGCAGGTTGGcc                                                                                                                                         >  2:1000503/1‑106 (MQ=255)
                                                        gcaAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACTTGCGCAGGTTGGcc                                                                                                                                         <  1:1000503/106‑1 (MQ=255)
                                                        gcaAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTTGCCAAGGCGGTGCGGGGGGGCGCCCGGCAGGGTAGCTGCCCTGCATg                                                                                             >  1:1717425/1‑150 (MQ=255)
                                                            gggCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAAcc                                                                                         >  2:1358425/1‑150 (MQ=255)
                                                             ggCAGGTC‑AGCTCGACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCt                                                                                        >  2:879728/1‑150 (MQ=255)
                                                                aGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTgg                                                                                     <  2:1191234/150‑1 (MQ=255)
                                                                 ggTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACCGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGc                                                                                    <  1:614144/150‑1 (MQ=255)
                                                                   tCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCt                                                                                  >  2:1699453/1‑150 (MQ=255)
                                                                      aGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGAt                                                                               <  1:1358425/150‑1 (MQ=255)
                                                                            aCCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAggg                                                                                                            >  1:2322230/1‑116 (MQ=255)
                                                                            aCCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAggg                                                                                                            <  2:2322230/116‑1 (MQ=255)
                                                                              cTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGcc                                                                        >  1:1657604/1‑150 (MQ=255)
                                                                              cTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGcc                                                                        >  2:2041793/1‑150 (MQ=255)
                                                                               tGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAgg                                                                                                             >  2:1072632/1‑112 (MQ=255)
                                                                               tGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAgg                                                                                                             <  1:1072632/112‑1 (MQ=255)
                                                                               tGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGACCCTTGGCCTGATTACTGCCg                                                                       >  1:1931199/1‑150 (MQ=255)
                                                                                 ccGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGcc                                                                                                                                         <  1:387731/82‑1 (MQ=255)
                                                                                 ccGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGcc                                                                                                                                         >  2:387731/1‑82 (MQ=255)
                                                                                   gTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGcc                                                                                                                    >  2:1343605/1‑101 (MQ=255)
                                                                                   gTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGcc                                                                                                                    >  1:51133/1‑101 (MQ=255)
                                                                                   gTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGcc                                                                                                                    <  2:51133/101‑1 (MQ=255)
                                                                                   gTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGcc                                                                                                                    <  1:1343605/101‑1 (MQ=255)
                                                                                   gTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGt                                                                                                           >  1:2125843/1‑110 (MQ=255)
                                                                                   gTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGt                                                                                                           <  2:2125843/110‑1 (MQ=255)
                                                                                    tACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGc                                                                                                                                          >  1:1656284/1‑78 (MQ=255)
                                                                                    tACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGc                                                                                                                                          <  2:1656284/78‑1 (MQ=255)
                                                                                    tACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTgc                                                                  >  2:733139/1‑150 (MQ=255)
                                                                                         cAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTgctggct                                                             <  2:625395/150‑1 (MQ=255)
                                                                                           gTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGc                                                                                                     >  2:1675587/1‑108 (MQ=255)
                                                                                           gTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGc                                                                                                     <  1:1675587/108‑1 (MQ=255)
                                                                                           gTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTgctgg                                                               >  2:626486/1‑146 (MQ=255)
                                                                                           gTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTgctgg                                                               <  1:626486/146‑1 (MQ=255)
                                                                                            tGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGTAGGTTAGCTGCCTTGCATTAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGtt                                                          <  1:298208/150‑1 (MQ=255)
                                                                                               aGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTcc                                                       >  2:229963/1‑150 (MQ=255)
                                                                                               aGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTcc                                                       <  2:2400906/150‑1 (MQ=255)
                                                                                                gACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCt                                                      <  1:2283228/150‑1 (MQ=255)
                                                                                                gACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCt                                                      <  2:1774690/150‑1 (MQ=255)
                                                                                                   tgctgcGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGc                                                                                                                               >  1:655992/1‑74 (MQ=255)
                                                                                                   tgctgcGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGc                                                                                                                               <  2:655992/74‑1 (MQ=255)
                                                                                                      tgcGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCgggg                                                                                                                           >  1:1274426/1‑75 (MQ=255)
                                                                                                      tgcGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCgggg                                                                                                                           <  2:1274426/75‑1 (MQ=255)
                                                                                                         ggACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGt                                             <  1:879728/150‑1 (MQ=255)
                                                                                                             aacaGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAAGCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGc                                         >  1:2108053/1‑150 (MQ=255)
                                                                                                             aacaGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGc                                         >  1:1235544/1‑150 (MQ=255)
                                                                                                              acaGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGcc                                        <  1:589982/150‑1 (MQ=255)
                                                                                                                aGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCtt                                      >  1:492826/1‑150 (MQ=255)
                                                                                                                 gCATAACCAGCCTGGTGAATGCGCACCAGGCCAAACTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTg                                     <  1:785595/150‑1 (MQ=255)
                                                                                                                     cACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCa                                 >  1:1959886/1‑150 (MQ=255)
                                                                                                                       ccAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGc                               >  2:347974/1‑150 (MQ=255)
                                                                                                                        cAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCt                                                                                                       >  2:283023/1‑77 (MQ=255)
                                                                                                                        cAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCt                                                                                                       <  1:283023/77‑1 (MQ=255)
                                                                                                                        cAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCg                              >  1:685424/1‑150 (MQ=255)
                                                                                                                             tGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAgg                         <  2:1931199/150‑1 (MQ=255)
                                                                                                                             tGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAgg                         <  1:73363/150‑1 (MQ=255)
                                                                                                                                     gcgcACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAAc                                                                                          <  1:1577980/77‑1 (MQ=255)
                                                                                                                                     gcgcACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAAc                                                                                          >  2:1577980/1‑77 (MQ=255)
                                                                                                                                          ccAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTcgc            <  1:733139/150‑1 (MQ=255)
                                                                                                                                           tcggCCAACTTGCGCAGGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTcgcg           >  1:154391/3‑150 (MQ=255)
                                                                                                                                           cAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTcgcg           >  2:954324/1‑150 (MQ=255)
                                                                                                                                           cAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTcgcg           >  1:2035324/1‑150 (MQ=255)
                                                                                                                                            aGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTCgcgc          >  2:1247383/1‑150 (MQ=255)
                                                                                                                                             ggCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTCGCGCa         >  1:862098/1‑150 (MQ=255)
                                                                                                                                              gCCAACTTGCGCAGGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGATGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTCGCGCaa        >  2:2132130/1‑150 (MQ=255)
                                                                                                                                                    cTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCCGCGGCAGGTGGTCGCACTCGCGCAACCCAtt  >  2:188/1‑150 (MQ=255)
                                                                                                                                                    cTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGATGGCTGTTTc                                                        <  1:1989401/96‑1 (MQ=255)
                                                                                                                                                    cTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGATGGCTGTTTc                                                        >  2:1989401/1‑96 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TTCGACACGGTACCAGGGCGCTACGCCTCGCTGGAGGCCGTGTGGCGCCTGAAGCAGCAAGGGCAGGTCGAGCT‑GACCTGCCGTACGTCAGTGCAGACTGCTGCGGACAACAGCATCACCAGCCTGGTGAATGCGCACCAGGCCAACCTGCGCAAGTTGGCCGAGGCGGTGCGGGGGAGTGCCCGGCAGGGTAGCTGCCCTGCATGAACCTTGGCCTGATTACTGCCGGGTGCTGGCTGTTTCCTGTACCCCGTCGGCCTTGTCCAGCGGCAGGTGGTCGAACTCGCGCAAGCCATT  >  NC_002947/2945591‑2945887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑