Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,972,686	G→C	6.0%	L411V (CTG→GTG)	PP_2600 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,972,686	0	G	C	6.0%	263.3 / 6.3	85	L411V (CTG→GTG)	PP_2600	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (40/39);  new base C (2/3);  total (42/43)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01

GCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTGACG  >  NC_002947/2972538‑2972828                                                                                                                                                     |                                                                                                                                               gCCGGGTCCTGGCCGTTACGGGCATGGGCATTGAAGTCAGTGCCCGTAGCGCGTAGCCCGGACGGGTCGAGGCCACAGTCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGc                                                                                                                                               >  2:2080628/1‑150 (MQ=255)     ggTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTg                                                                                                                                           <  1:2029164/150‑1 (MQ=255)      gTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGc                                                                                                                                          <  1:2161689/150‑1 (MQ=255)          tGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCcggg                                                                                                                                      >  1:2216580/1‑150 (MQ=255)          tGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTGTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCcggg                                                                                                                                      <  2:938728/150‑1 (MQ=255)            gCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGGAGACCGCACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCcgggcg                                                                                                                                    >  1:1253920/1‑150 (MQ=255)            gCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCcgggcg                                                                                                                                    <  1:1514522/150‑1 (MQ=255)            gCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCACCGCTGCcggtag                                                                                                                                    <  2:725700/150‑4 (MQ=255)            gCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCAATACCGGCCACGGTGCcgggcg                                                                                                                                    <  2:644082/150‑1 (MQ=255)              cGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCcgggcggg                                                                                                                                  <  2:1066708/150‑1 (MQ=255)                   cGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGc                                                                                                                             <  1:1434416/150‑1 (MQ=255)                       cATGGGTATTGAAGTCAGTGACCGTGGCACGCAGCCCGGAAGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCCGGTAGCCGATGCGCACATCCGCCCCCCCCGGCAGCGTTTCCTGGCTGGCATGCCCCa                                                                                                                         <  2:2329243/150‑1 (MQ=255)                          gggTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGc                                                                                                                      >  2:245157/1‑150 (MQ=255)                            gTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAg                                                                                                                        <  1:1012132/146‑1 (MQ=255)                            gTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAg                                                                                                                        >  2:1012132/1‑146 (MQ=255)                               ttGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAg                                                                                                                 <  1:2359841/150‑1 (MQ=255)                                        gTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCaag                                                                                                        >  1:1491508/1‑150 (MQ=255)                                           aCCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCaagaag                                                                                                     <  1:2198092/150‑1 (MQ=255)                                             cGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCg                                                                                                   <  1:228530/150‑1 (MQ=255)                                              gTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCga                                                                                                  <  1:2282701/150‑1 (MQ=255)                                                       aGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCGCCCGGCACCGCTGCcggtag                                                                                                                                    >  1:1948422/1‑104 (MQ=255)                                                       aGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCGCCCGGCACCGCTGCcggtag                                                                                                                                    <  2:1948422/107‑4 (MQ=255)                                                         cccGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAGGCGATGATCGCAAAc                                                                                       >  1:239290/1‑150 (MQ=255)                                                         cccGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAAc                                                                                       >  2:1836335/1‑150 (MQ=255)                                                          ccGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAAcc                                                                                      >  2:2024625/1‑150 (MQ=255)                                                             gACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGGAGCGATGATCGCAAACCAGc                                                                                   <  1:2053291/150‑1 (MQ=255)                                                                  gTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCa                                                                                 >  2:1807047/1‑147 (MQ=255)                                                                  gTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCa                                                                                 <  1:1807047/147‑1 (MQ=255)                                                                  gTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGa                                                                              <  2:123159/150‑1 (MQ=255)                                                                  gTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGa                                                                              <  1:335158/150‑1 (MQ=255)                                                                     aaTGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAgcgg                                                                                                              <  1:2220968/115‑1 (MQ=255)                                                                     aaTGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAgcgg                                                                                                              >  2:2220968/1‑115 (MQ=255)                                                                     aaTGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGca                                                                           >  2:1086365/1‑150 (MQ=255)                                                                      aTGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGcac                                                                          >  1:2316799/1‑150 (MQ=255)                                                                       tGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGcaca                                                                         <  1:1813449/150‑1 (MQ=255)                                                                                 cTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGcc                                                               <  1:2024625/150‑1 (MQ=255)                                                                                    ggCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTg                                                            <  2:1937072/150‑1 (MQ=255)                                                                                         gctgctCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCa                                                       <  1:310203/150‑1 (MQ=255)                                                                                           tgctCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCGCCCGGCACCGCTGc                                                                                                                                          <  2:129952/65‑1 (MQ=37)                                                                                            gctCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTg                                                    >  2:1998184/1‑150 (MQ=255)                                                                                             ctCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGc                                                   >  1:41057/1‑150 (MQ=255)                                                                                                gAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGca                                                                           >  2:1925521/1‑123 (MQ=255)                                                                                                gAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGca                                                                           <  1:1925521/123‑1 (MQ=255)                                                                                                gAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGc                                                >  2:1913613/1‑150 (MQ=255)                                                                                                    gTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGc                                                >  1:210810/1‑146 (MQ=255)                                                                                                    gTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGc                                                <  2:210810/146‑1 (MQ=255)                                                                                                       gcgcCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTACCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATg                                         <  1:1144781/150‑1 (MQ=255)                                                                                                         gccgcGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCaagaag                                                                                                     >  1:622901/1‑88 (MQ=255)                                                                                                         gccgcGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCaagaag                                                                                                     <  2:622901/88‑1 (MQ=255)                                                                                                         gccgcGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGACCAGCGGCACTGCAGCGCCCATGGc                                       >  2:136968/1‑150 (MQ=255)                                                                                                          ccgcGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGcc                                      >  1:213530/1‑150 (MQ=255)                                                                                                            gcgTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAgg                                                                                                                       >  2:2395664/1‑67 (MQ=255)                                                                                                            gcgTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAgg                                                                                                                       <  1:2395664/67‑1 (MQ=255)                                                                                                            gcgTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGa                                    <  1:203759/150‑1 (MQ=255)                                                                                                              gTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTg                                                                  <  1:845960/118‑1 (MQ=255)                                                                                                              gTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTg                                                                  >  2:845960/1‑118 (MQ=255)                                                                                                                   aGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCGGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAg                             >  1:176176/1‑150 (MQ=255)                                                                                                                   aGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAg                             <  2:2216580/150‑1 (MQ=255)                                                                                                                    ggTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGt                            >  1:726690/1‑150 (MQ=255)                                                                                                                     gTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGccc                                                              <  1:1445695/115‑1 (MQ=255)                                                                                                                     gTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGccc                                                              >  2:1445695/1‑115 (MQ=255)                                                                                                                     gTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTc                           >  1:1640103/1‑150 (MQ=255)                                                                                                                     gTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTc                           <  2:726690/150‑1 (MQ=255)                                                                                                                      tAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCg                          >  1:474615/1‑150 (MQ=255)                                                                                                                          cGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAAt                      >  1:2363014/1‑150 (MQ=255)                                                                                                                                gcACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGc                                                                                                                             >  1:1577567/1‑41 (MQ=255)                                                                                                                                gcACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGc                                                                                                                             <  2:1577567/41‑1 (MQ=255)                                                                                                                                gcACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGTCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCAt                >  1:2106335/1‑150 (MQ=255)                                                                                                                                gcACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCGGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCAt                >  2:449389/1‑150 (MQ=255)                                                                                                                                ccacaAGGGGCGCGACCGTCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACCCCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCAt                <  2:2316799/149‑1 (MQ=255)                                                                                                                                 cacaTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCAtt               >  1:1341219/1‑149 (MQ=255)                                                                                                                                  acaTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGAc                                             <  2:267160/119‑1 (MQ=255)                                                                                                                                  acaTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGAc                                             >  1:267160/1‑119 (MQ=255)                                                                                                                                  acaTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGc                   >  2:591710/1‑145 (MQ=255)                                                                                                                                  acaTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGc                   <  1:591710/145‑1 (MQ=255)                                                                                                                                  acaTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATgc              >  2:1383143/1‑150 (MQ=255)                                                                                                                                  acaTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATgc              <  2:1253920/150‑1 (MQ=255)                                                                                                                                    aTGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATgcgc            <  1:1836335/150‑1 (MQ=255)                                                                                                                                        ggCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCg        >  1:3526/1‑150 (MQ=255)                                                                                                                                           ccgcccGGCACCGCTGCCGGTAGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTg     >  2:1461560/5‑150 (MQ=255)                                                                                                                                            cTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTGa    >  2:2210000/1‑150 (MQ=255)                                                                                                                                            cTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTGa    >  1:207921/1‑150 (MQ=255)                                                                                                                                             tACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTGa    >  1:1915118/1‑149 (MQ=255)                                                                                                                                             tACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTGa    <  2:1915118/149‑1 (MQ=255)                                                                                                                                              aCCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTGACg  <  1:245157/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               GCCGGGTCCTGGCCGTTACGGGCATGGGTATTGAAGTCAGTGACCGTGGCGCGCAGCCCGGACGGGTCAATGCCGCAGGCCTGGGCGAGCTGCTCGAGCGTAGCGCCGCGTTTCAGGTAGCCGTTGCGCACATGCGGCCCTACCGGCAGCGGTGCCGGGCGGGCATGCCCCAGGCCATAGCGGCGCAAGAAGCGATGATCGCAAACCAGCCACGAGCACACCTCCTGGCCCTGCGGCACTGCAGCGACCATGGCCGACACATAGTCGTAATAGCCATGCGCTTCGTTGACG  >  NC_002947/2972538‑2972828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑