| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,989,258 | G→T | 7.0% | R43R (CGG→AGG) | PP_2613 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,989,258 | 0 | G | T | 7.0% | 379.5 / 10.6 | 123 | R43R (CGG→AGG) | PP_2613 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (55/58); new base T (5/4); total (60/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.56e-01 | |||||||||||
Only 100 of 123 total aligned reads displayed.
ACCAGCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGCGGCAATCGGGTAGGGGACAGGAG > NC_002947/2989110‑2989402 | accaGCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGa < 2:1375683/150‑1 (MQ=255) ccaGCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGAt > 2:2258075/1‑150 (MQ=255) caGCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATa > 2:1369821/1‑150 (MQ=255) aGCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAg < 1:1831106/150‑1 (MQ=255) gCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGAt > 2:1435394/1‑147 (MQ=255) gCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGAt < 1:1435394/147‑1 (MQ=255) gCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAgg < 1:195656/150‑1 (MQ=255) cAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGc < 1:649746/150‑1 (MQ=255) aaaGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGcc < 1:1537322/150‑1 (MQ=255) ggCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCTATCGGCCCat < 2:1042662/150‑2 (MQ=255) ccAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCTATCGGCCCatc > 2:1062807/1‑146 (MQ=255) ccAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCTATCGGCCCatc < 1:1062807/148‑3 (MQ=255) ccAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTtc > 2:709188/1‑150 (MQ=255) cAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTGATATGGTCGAGTACCGAGGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCTAGGGGCCCAGTtct > 1:498921/1‑150 (MQ=255) aaCTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCa > 1:391317/1‑143 (MQ=255) aaCTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCa < 2:391317/143‑1 (MQ=255) tCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGGTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAtt > 2:588594/1‑150 (MQ=255) tCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAtt < 2:33888/150‑1 (MQ=255) tCATGACGGTCATCCAGGGCGCTGTTCTTACATAACCATTCCTTTTGAGTATTTCGGCTGACAGCGTTTATACGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAtt < 1:1638543/150‑1 (MQ=255) ggTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTgg < 1:1369821/150‑1 (MQ=255) aTCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGCCAGCTTGTATATGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCAt < 1:544010/150‑1 (MQ=255) tCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAgg > 1:1110226/1‑124 (MQ=255) tCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAgg < 2:1110226/124‑1 (MQ=255) cAGGGCGCTGTTCTTCCATAACCATGCCTTTTTAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACTTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGag < 1:2102857/150‑1 (MQ=255) gcTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCTATCGGCCCat > 2:1419758/1‑120 (MQ=255) gTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCCGTTCTCGATTGCACTGGTCATGAGCAGCAGaaa > 1:944608/1‑150 (MQ=255) gTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGaaa > 1:188608/1‑150 (MQ=255) ttcttcCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCa < 1:757954/116‑1 (MQ=255) ttcttcCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAg > 1:1694505/1‑150 (MQ=255) ttcttcCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAg < 1:1423968/150‑1 (MQ=255) cttcCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCa > 2:1203684/1‑127 (MQ=255) cttcCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCa < 1:1203684/127‑1 (MQ=255) cttcCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCg > 2:1459456/1‑150 (MQ=255) cATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACATTCATGCGGGATAGGCGGATAGGCCGAGTTGATGTGTGTACTGGTCATGAGCAGCATAAAGCGGCAg > 2:1171822/1‑150 (MQ=255) aTAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGt > 2:2073098/1‑150 (MQ=255) tAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAtt > 2:2140367/1‑118 (MQ=255) tAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAtt < 1:2140367/118‑1 (MQ=255) cATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGa > 2:1471422/1‑150 (MQ=255) cTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGACGATGGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGaa < 2:586716/150‑1 (MQ=255) cTTATGAGTATTTGGGCTGACAGCGTTTATAAGGGCGAGTACCGATGGGGTATAATCAGGAAACAGTTCACACATCAGCTGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGaa < 1:162591/150‑1 (MQ=255) ttttGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAg > 1:2353467/1‑150 (MQ=255) gAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCtt < 1:2258075/150‑1 (MQ=255) tATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGc < 2:1766025/150‑1 (MQ=255) tATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGc > 2:2390300/1‑150 (MQ=255) tttCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCAt < 1:726876/110‑1 (MQ=255) tttCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCAt > 2:726876/1‑110 (MQ=255) cGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCTGTCCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTgcgc < 1:1083056/150‑1 (MQ=255) gCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAtt < 1:2156571/94‑1 (MQ=255) tGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGCACCAGTTCCCCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCggag > 1:47627/1‑150 (MQ=255) tGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCggag > 1:2034155/1‑150 (MQ=255) tGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCggag < 1:273923/150‑1 (MQ=255) gACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCggagg > 2:867481/1‑150 (MQ=255) aCAGCGTTTATAAGGTCGATTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCTGCACGGCGCAATAGGCCACGTTCTCGATTGCACTGGTCATGCGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCggagga < 1:1977784/150‑1 (MQ=255) aGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGaggagg < 1:475684/150‑1 (MQ=255) aGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGaggagg < 2:2173107/150‑1 (MQ=255) cGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCGCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtg > 1:1189109/1‑150 (MQ=255) cGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtg < 1:1459456/150‑1 (MQ=255) gTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtga < 1:709188/150‑1 (MQ=255) ttATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTg > 2:689308/1‑89 (MQ=255) ttATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTg < 1:689308/89‑1 (MQ=255) ttATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGa < 1:81623/96‑1 (MQ=255) ttATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGa > 2:81623/1‑96 (MQ=255) ttATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtgatg < 2:2353467/150‑1 (MQ=255) tataAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtgatga < 2:190127/150‑1 (MQ=255) taAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGa < 1:1839830/116‑1 (MQ=255) taAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGa > 2:1839830/1‑116 (MQ=255) taAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACa > 1:1031208/1‑150 (MQ=255) ggTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGaa > 2:816331/1‑118 (MQ=255) ggTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGaa < 1:816331/118‑1 (MQ=255) gTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAt < 1:301661/75‑1 (MQ=255) gTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGAt > 2:301661/1‑75 (MQ=255) gAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAggtggt > 2:1185690/1‑150 (MQ=255) gTACCGATGTGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCgg < 2:1604419/98‑1 (MQ=255) cGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTgg > 2:1534935/1‑150 (MQ=255) cGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTgg > 2:434288/1‑150 (MQ=255) aTGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGAc < 2:1694505/150‑1 (MQ=255) tAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTc < 1:1471422/150‑1 (MQ=255) tAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTc < 1:30897/150‑1 (MQ=255) aGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGagcag < 1:2058044/72‑1 (MQ=255) aGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGagcag > 2:2058044/1‑72 (MQ=255) ggAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGCCAAGGTGGTCATTGGACTTGCCCTCGGATAc > 2:1113523/1‑150 (MQ=255) gAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGgaggag > 2:247759/1‑111 (MQ=255) aCCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGc > 2:2223679/1‑150 (MQ=255) ccAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGCg < 1:315564/150‑1 (MQ=255) cACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGTTGTTGTGGCAAGGTGGTCATTTGGCTTGTTCTGGGATACAGCggtagtc < 2:944608/150‑6 (MQ=255) cACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtga > 2:1981774/1‑106 (MQ=255) cACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtga < 1:1981774/106‑1 (MQ=255) aCCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGGGGAGGTGATGACAAGGTGGTCATTGGAc > 1:1700506/1‑125 (MQ=255) aCCTTCCTGCGGGATGGGCCGATAGGCCCAGCTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGTAc < 2:1700506/125‑1 (MQ=255) ccTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAggtgg > 2:2084067/1‑115 (MQ=255) ccTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAggtgg < 1:2084067/115‑1 (MQ=255) ccTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGCGGCAATCgg < 1:2390300/150‑1 (MQ=255) cTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGCTTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGCTACAGCGGCAATCggg > 1:1845985/1‑150 (MQ=255) cTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTg > 1:1285630/1‑120 (MQ=255) tCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGCGGCAATCGGGTa < 1:867481/150‑1 (MQ=255) cGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTTCCCTCGGATACAGCGGCAATCGGGTAGGGGa < 2:1189109/150‑1 (MQ=255) gggATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtga > 2:2195527/1‑95 (MQ=255) gggATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGtga < 1:2195527/95‑1 (MQ=255) ctGGGCCTATCGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGCGGCAATCGGGTAggg > 1:10106/2‑144 (MQ=255) gggCCGAGACGCCCAGTTCTCGGTTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGCGGCAATCGGGTAGGGGACAGGAg < 2:748688/150‑1 (MQ=255) | ACCAGCAAAGGCCCAAACTCATGACGGTCATCCAGGGCGCTGTTCTTCCATAACCATGCCTTTTGAGTATTTCGGCTGACAGCGTTTATAAGGTCGAGTACCGATGGGGCATAAGCAGGAACCAGTTCACCTTCCTGCGGGATGGGCCGATAGGCCCAGTTCTCGATTGCACTGGTCATGAGCAGCAGAAAGCGGCAGTTGTGAGCGAAGTCTTCGCTGCGCGGAGGAGGTGATGACAAGGTGGTCATTGGACTTGCCCTCGGATACAGCGGCAATCGGGTAGGGGACAGGAG > NC_002947/2989110‑2989402 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |