| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,048,633 | A→G | 9.0% | intergenic (+45/‑251) | PP_2661 → / → PP_2662 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,048,633 | 0 | A | G | 9.0% | 211.1 / 7.5 | 76 | intergenic (+45/‑251) | PP_2661/PP_2662 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (29/39); new base G (4/3); total (33/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.54e-01 | |||||||||||
AAGGTGAAGGACGCGGTGGTGGATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTA > NC_002947/3048484‑3048776 | aaGGTGAAGGACGCGGTGGTGGATGTTCAAGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCACCGTTCGCAGGCACTGGC‑TGATGTTGTTCACAATTTTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCa < 1:2224502/150‑1 (MQ=255)aaGGTGAAGGACGCGGTGGTGGATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCa < 2:2366165/150‑1 (MQ=255) tGAAGGACGCGGTGGTGGATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGccc > 1:846355/1‑150 (MQ=255) cgcgGTGGTGGATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCgg < 1:2361021/150‑1 (MQ=255) cgcgGTGGTGGATGTGCAGGCACGGCTGGCCTGGCAGAAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCTCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCgg < 1:1706464/150‑1 (MQ=255) gtggtgTATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGTCCGCTTGCCAGCATTCGCACGCCCTGGGTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGa < 2:82669/150‑1 (MQ=255) ctattttgCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTAAAGCTGATTTGCAGCACTTCGCGGGCGAGccc > 1:695576/7‑150 (MQ=255) ggATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGctc > 1:1078103/1‑143 (MQ=255) ggATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGctc < 2:1078103/145‑3 (MQ=255) ggATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCcg < 2:1825321/150‑1 (MQ=255) tgtgCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGa < 1:153089/150‑1 (MQ=255) gtgCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCTCGCCCGCGaa < 2:217966/150‑1 (MQ=255) gCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAgg < 2:863103/150‑1 (MQ=255) ggCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGcc > 2:197420/1‑150 (MQ=255) ggCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAg > 1:36742/1‑150 (MQ=255) ggcAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCg > 1:1671094/1‑150 (MQ=255) agcaACCGCACCGTTATGAAATGATCGCTTGATAGCGTGCTTAGGCACTGGCTGCCGGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGACCGCAAGGCGGCCCCggat > 1:1259498/1‑148 (MQ=255) caACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCTTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGttca < 1:110018/150‑1 (MQ=255) aCCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGttcatt < 2:846355/150‑1 (MQ=255) cGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAACGAAAATGCCGACCCTTAGTGCCGGTTTTTTGGGGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGttcattca > 1:285201/1‑150 (MQ=255) gCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCaa > 2:391234/1‑150 (MQ=255) gTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTa < 2:235240/150‑1 (MQ=255) gTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTa < 1:16615/150‑1 (MQ=255) tttgggtaTGCCCGTTTGCCAGCGGTGGCAGGGAGTGGATTCCTGGAG‑GCAGGAGATCCCGCTAAGATAATGTAATTGGGGCTGGTTTAGAGCGCTTCGCGTGCGAGCAGGCGAAGGGCCGCAAGGCGGCGCCGGTTCATTCAATCGTAt < 2:2337375/143‑1 (MQ=255) tATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTAtt < 2:1498481/150‑1 (MQ=255) cccGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGc < 1:391234/150‑1 (MQ=255) cccGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCACGCGAAgg > 2:827463/1‑107 (MQ=255) cccGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCACGCGAAgg < 1:827463/107‑1 (MQ=255) gCTTGCCAGTGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCGAACTCATTCAATCGTATTGATACCCGCCTg < 1:675785/150‑1 (MQ=255) ccAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTcgc > 2:861011/1‑82 (MQ=255) ccAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTcgc < 1:861011/82‑1 (MQ=255) cAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTc > 2:2281007/1‑150 (MQ=255) gCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCTCGCCCGCGAAg < 2:191150/89‑1 (MQ=255) gCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCTCGCCCGCGAAg > 1:191150/1‑89 (MQ=255) cACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTcctgc > 1:1646413/1‑141 (MQ=255) cACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTcctgc < 2:1646413/141‑1 (MQ=255) cACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCAt > 1:853004/1‑150 (MQ=255) gCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAggcgg < 2:1826611/92‑1 (MQ=255) gCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAggcgg > 1:1826611/1‑92 (MQ=255) ttcaggAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGtctc < 2:1280601/145‑1 (MQ=255) tcccTGAAG‑ACAGCCGACTCTACTGATATAAAGTAATGTGGTGTGCTTTGCAGCCTCTCGCGGGTCGCCGCCCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGtctc < 1:655242/148‑1 (MQ=255) cTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCgg > 1:129471/1‑60 (MQ=255) cTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCgg < 2:129471/60‑1 (MQ=255) cTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGaa > 1:598911/1‑150 (MQ=255) tGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAAc > 1:131270/1‑150 (MQ=255) gAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAAcc < 2:1260834/150‑1 (MQ=255) aaG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCCGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCa < 2:2343774/150‑1 (MQ=255) aG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAg < 2:36742/150‑1 (MQ=255) cAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCGGCCCTTCGCGGGCTCGCCCGCGAAGGGCTGCaaa < 2:938443/76‑2 (MQ=18) cAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCGGCCCTTCGCGGGCTCGCCCGCGAAGGGCTGCaaa > 1:938443/1‑75 (MQ=18) cAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATCGAATCGTATTGAAACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGAc < 2:695576/150‑1 (MQ=255) aGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATa > 2:1667209/1‑105 (MQ=255) aGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATa < 1:1667209/105‑1 (MQ=255) tCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTAcc > 2:1957064/1‑150 (MQ=255) aGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCgg < 2:853004/150‑1 (MQ=255) gATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCaa > 2:1809770/1‑138 (MQ=255) gATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCaa < 1:1809770/138‑1 (MQ=255) gATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCggg > 2:230414/1‑150 (MQ=255) tAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCGGGAc < 2:598911/150‑1 (MQ=255) aTGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTcctgc > 2:1763446/1‑104 (MQ=255) aTGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTcctgc < 1:1763446/104‑1 (MQ=255) tGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCa > 2:1250110/1‑136 (MQ=255) tGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCa < 1:1250110/136‑1 (MQ=255) tGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCGGGACCaa < 1:197420/150‑1 (MQ=255) tgaaccggggCCGCCTTGCGGCCCTTCGCGGGCTCGCCCGCGAAGGGCTGCAAAGCAGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGa < 2:2214189/121‑1 (MQ=17) tgaaccggggCCGCCTTGCGGCCCTTCGCGGGCTCGCCCGCGAAGGGCTGCAAAGCAGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACAAGGa > 1:2214189/7‑127 (MQ=17) ccggggCCGCCTTGCGGCCCTTCGCGGGCTCGCCCGCGAAGGGCTGCAAAGCAGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATaa < 2:977405/107‑1 (MQ=17) ccggggCCGCCTTGCGGCCCTTCGCGGGCTCGCCCGCGAAGGGCTGCAAAGCAGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATaa > 1:977405/3‑109 (MQ=17) gggCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCt > 1:1684939/1‑84 (MQ=255) gggCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCt < 2:1684939/84‑1 (MQ=255) ctgctTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAg > 1:2310088/1‑126 (MQ=255) ctgctTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAg < 2:2310088/126‑1 (MQ=255) ctgctTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCGGGACCAAATCACCGGGcc > 1:430841/1‑150 (MQ=255) tgctTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGtctc > 2:571183/1‑107 (MQ=255) tgctTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGtctc < 1:571183/107‑1 (MQ=255) ctTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTa < 2:1671094/150‑1 (MQ=255) tttGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGa < 2:519498/92‑1 (MQ=255) tttGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGa > 1:519498/1‑92 (MQ=255) aGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCa < 1:814189/116‑1 (MQ=255) aGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCa > 2:814189/1‑116 (MQ=255) | AAGGTGAAGGACGCGGTGGTGGATGTGCAGGCACGGCTGGCCTGGCAGCAACCGCACCGTTATGAAATGCCCGCTTGCCAGCGTTCGCAGGCACTGGCTTCCTGAAG‑CCAGGAGATTCCGCTCAGATAATGTAATTGGGGCTGCTTTGCAGCCCTTCGCGGGCGAGCCCGCGAAGGGCCGCAAGGCGGCCCCGGTTCATTCAATCGTATTGATACCCGCCTGCCACTCCTGCCTGAGCCATAAGTCTCGAACCAGGACCCAAGCAGGTACCGGGACCAAATCACCGGGCCGTA > NC_002947/3048484‑3048776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |