| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,082,807 | T→A | 5.4% | D435V (GAC→GTC) | PP_2692 ← | BCCT family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,082,807 | 0 | T | A | 5.4% | 279.1 / 4.3 | 89 | D435V (GAC→GTC) | PP_2692 | BCCT family transporter |
| Reads supporting (aligned to +/- strand): ref base T (45/39); new base A (2/3); total (47/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01 | |||||||||||
TGAAGGATTGCAGGGCCGTCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGG > NC_002947/3082658‑3082956 | tGAAGGATTGCAGGGCCGTCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGt > 1:510830/1‑150 (MQ=255) gATTGCAGGGCCGTCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCa > 1:2050803/1‑150 (MQ=255) aGGGCCGTCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCCAATGGCGACGCCAtggcc < 2:419266/150‑5 (MQ=255) ccGTCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCa < 1:1732721/150‑1 (MQ=255) tCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCa < 1:668305/137‑1 (MQ=255) tCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCa > 2:668305/1‑137 (MQ=255) cacaCCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTga > 1:1973484/1‑150 (MQ=255) acacCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTgag > 2:1220166/1‑150 (MQ=255) ccTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGaaa < 2:2210290/150‑1 (MQ=255) cgcCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGACACGGTGAAGGCC‑ATGGCGTCGACATTGGTCGCCACTTAGTTGAAAGTTa < 2:1955828/150‑1 (MQ=255) gcCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTag < 1:917330/150‑1 (MQ=255) gcCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGACGCGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTag > 1:1728770/1‑150 (MQ=255) cAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTagga > 2:790245/1‑150 (MQ=255) aaTGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTaggaa < 1:111314/150‑1 (MQ=255) tCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAggaacaggaaca > 2:1301315/1‑150 (MQ=255) aGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAgc > 1:234219/1‑150 (MQ=255) gCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAgcg > 2:699203/1‑150 (MQ=255) gCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAgcg > 1:1094261/1‑150 (MQ=255) accaccGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTaggaacagg < 2:1960009/141‑1 (MQ=255) accaccGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTaggaacagg > 1:1960009/1‑141 (MQ=255) ccaccGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAgcgcgc < 1:790245/150‑1 (MQ=255) cgccAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAg < 1:2189376/150‑1 (MQ=255) aTGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGt < 1:1220166/150‑1 (MQ=255) aTGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGt > 1:728842/1‑150 (MQ=255) aTGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGt < 1:414556/150‑1 (MQ=255) gCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAgcgc > 2:599472/1‑129 (MQ=255) gCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAgcgc < 1:599472/129‑1 (MQ=255) cGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCa < 2:2238580/150‑1 (MQ=255) cccAGACACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑CTGGCGTCGCCATTGGTGGCCACTGAGATGGCACTTAGGAACAGGCACAGCGCGCTGACAAGGCCACCTAGTGGCAGGGTCt > 2:97687/1‑150 (MQ=255) cccAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAGCAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCt < 2:2389033/150‑1 (MQ=255) ccAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAgg < 1:1725478/145‑1 (MQ=255) ccAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAgg > 2:1725478/1‑145 (MQ=255) ccAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTg > 1:129575/1‑150 (MQ=255) ccAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTg > 2:2026927/1‑150 (MQ=255) cAGAAACCGCGCAACCTCTTCTTCGGTTTATCCTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGc < 1:10449/150‑1 (MQ=255) aGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCg > 1:1552129/1‑150 (MQ=255) gAAACCGCGTAACCACGTGTTCTGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGGCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGt < 2:2268548/150‑1 (MQ=255) aCCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCAc < 2:1094261/150‑1 (MQ=255) cgcgCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCAcc > 1:671062/1‑127 (MQ=255) cgcgCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCAcc < 2:671062/127‑1 (MQ=255) gcgcAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTcc > 2:429284/1‑150 (MQ=255) gcAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCca < 2:728842/150‑1 (MQ=255) ccACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATtggtgg > 1:2121820/1‑71 (MQ=255) ccACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATtggtgg < 2:2121820/71‑1 (MQ=255) ccACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcag > 1:731929/1‑150 (MQ=255) aCTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagca > 1:590899/1‑150 (MQ=255) aCTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAAAAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagca > 2:211226/1‑150 (MQ=255) cttcttCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagcag > 1:2226731/1‑150 (MQ=255) cttcttCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagcag < 1:1301315/150‑1 (MQ=255) cttcttCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagcag > 2:2107009/1‑150 (MQ=255) cttcttCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagcag > 2:1418316/1‑150 (MQ=255) ttcGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAAc > 2:1824661/1‑79 (MQ=255) ttcGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAAc < 1:1824661/79‑1 (MQ=255) tcGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCtt > 2:915115/1‑150 (MQ=255) ggTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCa > 1:2333425/1‑150 (MQ=255) gTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTa < 1:1818161/78‑1 (MQ=255) gTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTa > 2:1818161/1‑78 (MQ=255) gTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGTTCTTCAg < 1:1418316/150‑1 (MQ=255) gTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAg > 1:112756/1‑150 (MQ=255) gTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAg < 1:2107009/150‑1 (MQ=255) tttATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAgg > 2:1378848/1‑150 (MQ=255) gtcgCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGgc < 1:2026927/150‑1 (MQ=255) aCATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATggg > 2:1156655/1‑150 (MQ=255) aTCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCg > 2:267463/1‑150 (MQ=255) tCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCgg < 2:590899/150‑1 (MQ=255) cGCCAGCGCCACGGGGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATTAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGt < 2:229504/150‑1 (MQ=255) atcAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTaggaacag > 2:5342/3‑65 (MQ=255) atcAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTaggaacag < 1:5342/63‑1 (MQ=255) ccACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGc > 1:1634675/1‑150 (MQ=255) cACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGcc > 1:712484/1‑150 (MQ=255) gTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGc < 2:731929/150‑1 (MQ=255) tGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTc < 1:2391749/99‑1 (MQ=255) tGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTc > 2:2391749/1‑99 (MQ=255) gAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGc > 2:2394387/1‑91 (MQ=255) gAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGc < 1:2394387/91‑1 (MQ=255) gAAGGCC‑AAGGCGACGACATTCGTGGCCACTGAGATGAAGCTGGTGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGt < 2:522623/150‑1 (MQ=255) aaGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGtt < 2:382375/150‑1 (MQ=255) aaGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGtt < 2:2050803/150‑1 (MQ=255) ccaccaaTGGCGACGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGtt > 1:2325295/7‑150 (MQ=255) aGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATggcct < 2:2313553/131‑4 (MQ=255) aGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATggcct > 1:2313553/1‑128 (MQ=255) ggCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTg < 2:2226731/150‑1 (MQ=255) caccaaTGGCGACGCCATGGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagcag < 1:156428/101‑1 (MQ=255) caccaaTGGCGACGCCATGGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCcagcagcag > 2:156428/6‑106 (MQ=255) c‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTGTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGAGACCTGGGGGGTGACGCCGCCTGGCGTGTGGAg > 1:1133490/1‑150 (MQ=255) c‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAg > 2:1782851/1‑150 (MQ=255) c‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAg > 2:1361266/1‑150 (MQ=255) gCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTcc > 2:1208880/1‑150 (MQ=255) gTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAg < 2:510830/150‑1 (MQ=255) gTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTCCTGCGTCGCTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAg < 1:97687/150‑1 (MQ=255) tCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAgg < 1:807806/150‑1 (MQ=255) | TGAAGGATTGCAGGGCCGTCACACCGCCTGCGCCAATGGTGATCAGCACCACCGCCGCCAGGCCCATGCCGATTGCCCAGAAACCGCGCAACCACTTCTTCGGTTTATCGTCGCTGGACATCGCCAGCGCCACGGTGAAGGCC‑ATGGCGTCGCCATTGGTGGCCACTGAGATGAAACTTAGGAACAGGAACAGCGCGCTGACAAGGCCACCTAGTGGCAGGTTCTGCGTCACTCCCAGCAGCAGGTCTTCAGGCTTGGCGCCATGGGCGGTGACGCTGCCTGGCGTTTGCAGCTCCAGG > NC_002947/3082658‑3082956 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |