| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,155,407 | C→G | 8.4% | G300A (GGC→GCC) | PP_2771 ← | sigma‑54 dependent transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,155,407 | 0 | C | G | 8.4% | 366.2 / 18.8 | 117 | G300A (GGC→GCC) | PP_2771 | sigma‑54 dependent transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (47/59); new base G (5/5); total (52/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
ATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGCACCAGGCCATTGCGGCA > NC_002947/3155259‑3155552 | aTTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTTAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGgccgcc > 1:2035383/1‑150 (MQ=255) ttGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGccgccg < 2:2391264/150‑1 (MQ=255) gACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGc > 2:568062/1‑150 (MQ=255) accaccAGCTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTAGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGcc < 2:1784710/150‑1 (MQ=255) caccaGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTg > 1:1904771/1‑150 (MQ=255) caccaGTTCGCCGATGGCGATCAGTCGGGCGCGAGTAACGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTg < 1:738191/150‑1 (MQ=255) accaGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGc < 1:1889205/150‑1 (MQ=255) accaGTTCGCCGATGGCGATCAGTAGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGACAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGc > 1:932082/1‑150 (MQ=255) ccaGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGAACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCCCGTGCCGGCCGCCGGCCTGcc > 1:1030616/1‑149 (MQ=255) aGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCCGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTTGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGctcc < 1:2168042/150‑1 (MQ=255) gCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCCGGTTGCAGTGGCAGAACCGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGaa < 1:1328888/150‑1 (MQ=255) ccGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAAc < 1:1008554/150‑1 (MQ=255) ccGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAAc > 1:585334/1‑150 (MQ=255) cGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTTGCAGAAACGATAGGCACTGTTTATCAGACGGTCCTCGACTTTCTCTTACAGGCTTCCTGCCTGCTCCCCGcaca > 2:508110/1‑150 (MQ=255) gaccggATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGcc > 2:688261/6‑135 (MQ=255) tGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGgc < 2:1904771/150‑1 (MQ=255) gCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGgcgc < 1:1280685/150‑1 (MQ=255) gCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGgcgc < 2:1920514/150‑1 (MQ=255) gATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTg < 1:287052/150‑1 (MQ=255) gATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGAGCAGGCCGGCGGCCTGcac < 2:49175/135‑3 (MQ=255) gATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGAGCAGGCCGGCGGCCTGcac > 1:49175/1‑133 (MQ=255) aGTCGGGCGCGGGGGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAg < 2:911767/150‑1 (MQ=255) gTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAgg > 2:797659/1‑150 (MQ=255) gggCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTc < 2:1771175/150‑1 (MQ=255) gggCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTc < 1:1382287/150‑1 (MQ=255) ggCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCg < 1:289779/150‑1 (MQ=255) gggTGATGTTGCGGCTCGGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCgcagca > 1:1927117/1‑150 (MQ=255) ggTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCaa < 1:568062/150‑1 (MQ=255) ggTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCaa > 2:1971059/1‑150 (MQ=255) tGATGTTGCGGCTCAGGCCCAGCACGCTCGCCGTGATCACCTTGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACt < 1:1362143/150‑1 (MQ=255) gATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTg < 2:496502/150‑1 (MQ=255) gTTGCGGCTTAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGttc < 2:2035383/150‑1 (MQ=255) cGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGCTAGGAACAAACCAGAGGGCTGTCCTCGACCTTCTCGGGCAGGCCGCCGGCCTGATCCTCGCACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCg < 1:172700/150‑1 (MQ=255) tCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGttcttc < 1:1083497/145‑1 (MQ=255) tCAGGCCCAGCAGGCTGGCAGTGTGAACCGGGTTGCAGTGGCAGAAACGATATGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCTCTGAAAGGCTCGCAGCAACTGTTCTTCGgcgc > 2:1001784/1‑150 (MQ=255) gCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTc > 1:931957/1‑150 (MQ=255) gCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTc > 1:471451/1‑150 (MQ=255) ccAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTcgg > 1:1902353/1‑150 (MQ=255) agcagGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTcggcg > 1:1294294/1‑150 (MQ=255) gcagGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACGGTTCTTCGGCGCTTTcggcgg > 2:216726/1‑150 (MQ=255) gCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCACCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCt > 1:2318902/1‑150 (MQ=255) tGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAg > 1:1508473/1‑110 (MQ=255) tGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCa < 2:585334/150‑1 (MQ=255) tGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCa > 1:1756984/1‑150 (MQ=255) tGGCCATGTGCACATGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCa > 2:1956297/1‑150 (MQ=255) cGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCgg > 2:631548/1‑150 (MQ=255) gtgCACCTGGTTGCAGTGGCAGAAACGATAGGCACTCAGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGa < 1:1109345/150‑1 (MQ=255) tgCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGACGGCCTGCTCATCGAACAGGCGGTGAAAGGCTCGCAGCAACTGTTCTTCCGCGCTTTCCGCGATGCTCACCGGCGAc < 2:1428129/150‑1 (MQ=255) cACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCGTCGGCGCTTTCGGCGGTGCTCACCGGCGAttt < 2:699588/150‑1 (MQ=255) ccTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGGCGGCCTg < 2:156567/76‑1 (MQ=255) ccTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGGCGGCCTg > 1:156567/1‑76 (MQ=255) tGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTcc > 2:391525/1‑150 (MQ=255) tGGTTGCAGTGGCAGAAACGACAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTcc < 2:932082/150‑1 (MQ=255) ggTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCt < 2:1902353/150‑1 (MQ=255) gTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCAGGTCAACTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTg < 1:762091/150‑1 (MQ=255) cAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCg < 1:2408390/111‑1 (MQ=255) aGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATgc > 1:785196/1‑150 (MQ=255) aaCGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCa < 2:444129/150‑1 (MQ=255) aCGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTg < 2:1362111/57‑1 (MQ=255) gATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGa < 1:2238397/124‑1 (MQ=255) gATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGa > 2:2238397/1‑124 (MQ=255) gaGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTNTNGNCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGc < 1:1338797/149‑1 (MQ=255) aGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAggacaa < 2:2204358/150‑5 (MQ=255) gCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGAc < 1:391525/150‑1 (MQ=255) aCTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAg < 2:1756984/150‑1 (MQ=255) aCTACGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAg > 1:552733/1‑150 (MQ=255) tGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGAc > 2:1814730/1‑116 (MQ=255) tGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGAc < 1:1814730/116‑1 (MQ=255) tGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGgc > 1:734726/1‑150 (MQ=255) cGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAACGGATTACAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGgcgc < 1:1956297/150‑1 (MQ=255) tAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAg < 2:1864043/150‑1 (MQ=255) tAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAg > 2:2221219/1‑150 (MQ=255) cAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAg > 1:1086986/1‑132 (MQ=255) cAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAg < 2:1086986/132‑1 (MQ=255) aGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGgtcg < 2:1137921/150‑1 (MQ=255) gCTGTCCTCGACCTTCTCGTGCAGGCCGGCGGCCTGca > 1:889020/1‑37 (MQ=25) gCTGTCCTCGACCTTCTCGTGCAGGCCGGCGGCCTGca < 2:889020/38‑2 (MQ=37) gCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCg < 1:566873/79‑1 (MQ=255) gCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGTTGCGACAGGCCCAGgtcgtc > 2:503275/1‑150 (MQ=255) tCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTcc < 2:1375492/150‑1 (MQ=255) tCCGCGACCTTCGCGTGCAGGCCGCCGGCCGGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCCGCGGTGCTCCCCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTcc < 2:1030616/150‑1 (MQ=255) ccTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCt < 2:952403/150‑1 (MQ=255) cTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCgcag > 2:1998937/1‑60 (MQ=255) cTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCgcag < 1:1998937/60‑1 (MQ=255) cTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGgtcgtcgtc < 2:437783/147‑1 (MQ=255) cTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGgtcgtcgtc > 1:437783/1‑147 (MQ=255) cTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTg > 1:2135822/1‑150 (MQ=255) tCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTTGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGc > 2:1582783/1‑150 (MQ=255) tCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGc > 2:1960440/1‑150 (MQ=255) tCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGc > 1:1598134/1‑150 (MQ=255) cGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGCa < 1:797659/150‑1 (MQ=255) cTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGgcgc > 1:1814683/1‑106 (MQ=255) cTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTg > 1:340310/1‑144 (MQ=255) cTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTg < 2:340310/144‑1 (MQ=255) tGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGCACCAGGCCATTg > 1:1857987/1‑150 (MQ=255) agCAGGCCGGCGGCCTGCTCCTCGAACAGGCGCTGAAAGGATCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGCACCAGGCCATTg > 1:2297845/2‑150 (MQ=255) gCAGGCCGGCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGc < 1:451128/75‑1 (MQ=255) gCAGGCCGGCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGc > 2:451128/1‑75 (MQ=255) aGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGCACCAGGCCATTGCgg < 2:552733/150‑1 (MQ=255) gccgccGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGAAGGGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGCACCAGGCCATTGCGGca > 1:1355618/1‑150 (MQ=255) | ATTGACCACCAGTTCGCCGATGGCGATCAGTCGGGCGCGGGTGATGTTGCGGCTCAGGCCCAGCAGGCTGGCCGTGTGCACCTGGTTGCAGTGGCAGAAACGATAGGCACTGCGTAGCAGGCTGTCCTCGACCTTCTCGTGCAGGCCGCCGGCCTGCTCCTCGAACAGGCGCTGAAAGGCTCGCAGCAACTGTTCTTCGGCGCTTTCGGCGGTGCTCACCGGCGACTTGTCCTGGCGCTCGATGCGCAGGTGCGACAGGCGCAGGTCGTCGTCCTGCACCAGGCCATTGCGGCA > NC_002947/3155259‑3155552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |