Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,223,266 | G→T | 12.9% | intergenic (‑530/+30) | PP_2823 ← / ← PP_2824 | methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,223,266 | 0 | G | T | 12.9% | 255.6 / 21.7 | 93 | intergenic (‑530/+30) | PP_2823/PP_2824 | methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (35/46); new base T (7/5); total (42/51) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.66e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.74e-01 |
AGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGAGCCAGCCATCA > NC_002947/3223117‑3223413 | aGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAg < 2:2124418/150‑1 (MQ=255) gACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAgg < 1:1180720/150‑1 (MQ=255) gCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGaa < 1:96163/150‑1 (MQ=255) aaTGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGGGGGGGTGACGCCTTCCAGGGAAgg > 1:1178532/1‑150 (MQ=255) aTGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGgc > 2:1691189/1‑150 (MQ=255) gcCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCgg > 1:445533/1‑150 (MQ=255) gcCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCgg > 2:1579528/1‑150 (MQ=255) tGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCCGGGACGGCGCCAGGTCTACCgg > 2:438317/1‑150 (MQ=255) tGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCgg > 1:2383695/1‑150 (MQ=255) cAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGATGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGa > 1:240521/1‑150 (MQ=255) aaaaaGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGGCGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAg < 2:415989/150‑1 (MQ=255) aaaaGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAgg > 2:391036/1‑150 (MQ=255) aaaGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGc < 2:2383695/150‑1 (MQ=255) cagggcaggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACt < 2:445533/150‑1 (MQ=255) gggcaggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTa < 1:445717/150‑1 (MQ=255) gcaggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAgg < 1:233872/150‑1 (MQ=255) gcaggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAgg > 1:76231/1‑150 (MQ=255) caggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGa < 2:910772/150‑1 (MQ=255) caggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGa < 2:2054925/150‑1 (MQ=255) caggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGa < 1:181855/150‑1 (MQ=255) cgcTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTg < 1:1579528/150‑1 (MQ=255) ccaTCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGc < 2:740558/148‑1 (MQ=255) cTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGc > 1:354004/1‑150 (MQ=255) tCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGa < 2:275562/129‑1 (MQ=255) tCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGa > 1:275562/1‑129 (MQ=255) tCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGt > 1:141248/1‑150 (MQ=255) gggCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGtttt < 2:1910375/150‑1 (MQ=255) gggCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGtttt < 2:1499013/150‑1 (MQ=255) gggCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGtttt < 1:1691189/150‑1 (MQ=255) gCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTgg < 1:248678/150‑1 (MQ=255) gCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTgg < 2:334758/150‑1 (MQ=255) gCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTgg < 2:141248/150‑1 (MQ=255) gCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCAGGAGGCGACTTAGGACTTGGCGGTTTTgg < 2:1253120/150‑1 (MQ=255) ccTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCggg > 1:34060/1‑122 (MQ=255) ccTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCggg < 2:34060/122‑1 (MQ=255) cTGGTGCTTGGGTTGGATCGGCAAGGCGCGGCGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGCTTGGCGGGGGTGACGCCTTCCAGGGAAGACCCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGCTTCTGGGt > 2:1162793/1‑150 (MQ=255) ggTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTgg < 2:1434199/150‑1 (MQ=255) tGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTAcccaagca > 1:987556/1‑114 (MQ=255) tGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTAcccaagca < 2:987556/120‑7 (MQ=255) ttGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACtt < 2:2008596/130‑1 (MQ=255) ttGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACtt > 1:2008596/1‑130 (MQ=255) tGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAAt < 2:2065152/150‑1 (MQ=255) gTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCAt > 1:2197368/1‑150 (MQ=255) gATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGAATTGTAGCGCAGGAGAGCTAATTAGCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACa > 1:1488946/1‑150 (MQ=255) gCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCCTGGAAGgcgtc < 1:1682181/89‑3 (MQ=255) gCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCCTGGAAGgcgtc > 2:1682181/1‑87 (MQ=255) gCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCgg > 2:1285947/1‑100 (MQ=255) gCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCgg < 1:1285947/100‑1 (MQ=255) gCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGaa < 1:973567/150‑1 (MQ=255) cAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAg < 1:820287/150‑1 (MQ=255) gcggcAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGtcaatcaa > 2:821594/1‑150 (MQ=255) cggcAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAg < 2:2197368/150‑1 (MQ=255) aGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGtcaatc > 1:2096873/1‑126 (MQ=255) aGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGtcaatc < 2:2096873/126‑1 (MQ=255) gcggcgAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAAc < 2:354004/150‑1 (MQ=255) ggcgAAGGCACGAGCGGTTGGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACgg < 2:1178532/150‑1 (MQ=255) gAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCgg < 1:890120/59‑1 (MQ=255) gAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCgg > 2:890120/1‑59 (MQ=255) aaGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTc < 1:438317/150‑1 (MQ=255) aGACACGAGCGGTGTGGTGGGGGTGATGCCCTCCAGGGAAGGCGGCGGGTGTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCg < 2:240521/150‑1 (MQ=255) gACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCgg < 2:76231/150‑1 (MQ=255) cacGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGAc < 1:946643/150‑1 (MQ=255) gAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGCCTTGGCGGCTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCg > 2:272685/1‑150 (MQ=255) gAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCAt < 1:1932004/92‑1 (MQ=255) gAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCAt > 2:1932004/1‑92 (MQ=255) ggTTTGGTGGGGGTGACGGCTTCCAGGGAAGGCGGCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGTAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCTCTCTGCGCTAACGGGTTCGGACTCGAAAg < 1:1162793/150‑1 (MQ=255) tttGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCGAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGgc > 2:1739543/1‑150 (MQ=255) gtggGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGgcagca > 1:1924710/1‑150 (MQ=255) ggggTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGtttt < 2:772274/64‑1 (MQ=255) ggggTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGtttt > 1:772274/1‑64 (MQ=255) gggTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGcatcat < 2:1488946/150‑1 (MQ=255) ccggcGCCTTCCCTGGAAGGCGTCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTc < 1:1544341/123‑1 (MQ=255) ccggcGCCTTCCCTGGAAGGCGTCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTc > 2:1544341/5‑127 (MQ=255) ccggcGCCTTCCCTGGAAGGCGTCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGa > 2:1403281/5‑150 (MQ=255) tGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGa < 1:1380600/149‑1 (MQ=255) tGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGa > 2:1380600/1‑149 (MQ=255) cggcGCCTTCCCTGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGaa > 2:1343133/4‑129 (MQ=255) cggcGCCTTCCCTGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGAc < 1:1343133/127‑1 (MQ=255) ggcGCCTTCCCTGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGagc > 2:562586/3‑150 (MQ=255) gcGCCTTCCCTGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGTCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGt < 2:1772310/121‑1 (MQ=255) gcGCCTTCCCTGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGTCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGt > 1:1772310/2‑122 (MQ=255) cGCCTTCCAGGGAAGGCGCTGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGagcca < 2:2243476/150‑1 (MQ=255) cGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGagcca < 1:821594/150‑1 (MQ=255) gCCTTCCCTGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGt > 1:1764079/1‑85 (MQ=255) gCCTTCCCTGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGt < 2:1764079/85‑1 (MQ=255) gCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGcatcat > 2:897755/1‑143 (MQ=255) gCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGcatcat < 1:897755/143‑1 (MQ=255) gCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGagccag > 2:814579/1‑150 (MQ=255) gCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTCAGCAGACGGGTTCGGACTCGAAAGGCAGCATCATGagccag > 1:1231907/1‑150 (MQ=255) ttCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGAgccagcca > 1:1359397/1‑150 (MQ=255) ccAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGAGCCAGCCATc < 1:814579/150‑1 (MQ=255) cAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGAGCCAGCCATCa > 1:1015356/1‑150 (MQ=255) cAGGGAAGGCGCCGGGTCTACCGGAAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTaa > 2:217464/1‑109 (MQ=255) cAGGGAAGGCGCCGGGTCTACCGGAAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTaa < 1:217464/109‑1 (MQ=255) cAGGGAAGGCGCCGGGGCTACCGGGAGGCGACTTAGGACTTGGCGGCTTTGGGTGGAGAAGTCATGACAATGAAGGCGTCCATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGAGCCAGCCATcc > 2:97056/1‑149 (MQ=255) | AGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGACTTGGCGGTTTTGGGTGGAGAAATCATGACAATGAAGGCGTCAATCAAGGCTTTCCCGCGCTCTGCGCTAACGGGTTCGGACTCGAAAGGCAGCATCATGAGCCAGCCATCA > NC_002947/3223117‑3223413 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |