Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,315,627 A→C 6.9% L192R (CTC→CGC)  PP_2915 ← membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,315,6270AC 6.9% 286.7 / 12.1 102L192R (CTC→CGC) PP_2915membrane protein
Reads supporting (aligned to +/- strand):  ref base A (51/44);  new base C (3/4);  total (54/48)
Fisher's exact test for biased strand distribution p-value = 7.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.49e-01

Only 100 of 105 total aligned reads displayed.

GCAGCACCCGCGCATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGCCATTCAC  >  NC_002947/3315478‑3315775
                                                                                                                                                     |                                                                                                                                                    
gcagcaCCCGCGCATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGa                                                                                                                                                      <  1:1647561/150‑1 (MQ=255)
     aCCCGCGCATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCCGGACCGCGGCATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGcgcg                                                                                                                                                 >  1:1308738/1‑150 (MQ=255)
     aCCCGCGCATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGcgcg                                                                                                                                                 <  1:2162056/150‑1 (MQ=255)
       tcgcgCATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCgcggc                                                                                                                                               <  1:1587156/149‑1 (MQ=255)
       ccGCGCATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGCGCtcggc                                                                                                                                               <  2:1551369/150‑1 (MQ=255)
           gcATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGCGCTCGGCGcct                                                                                                                                           <  1:111459/150‑2 (MQ=255)
             aTCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAg                                                                                                                                         >  2:2071952/1‑150 (MQ=255)
              tCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGc                                                                                                                                        >  2:1244389/1‑150 (MQ=255)
                 aaTGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCAGGCAGGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAAc                                                                                                                                     >  2:2132231/1‑150 (MQ=255)
                  aTGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACa                                                                                                                                    <  1:1244389/150‑1 (MQ=255)
                  aTGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACa                                                                                                                                    >  2:2028064/1‑150 (MQ=255)
                   tGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACAt                                                                                                                                   >  2:920172/1‑150 (MQ=255)
                     aTCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGc                                                                                                                                 <  2:1849829/150‑1 (MQ=255)
                      tCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGcc                                                                                                                                <  1:1433950/150‑1 (MQ=255)
                      tCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGAGGTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGcc                                                                                                                                >  1:1119764/1‑150 (MQ=255)
                       cAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCg                                                                                                                               <  1:184641/150‑1 (MQ=255)
                       cAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTCGCAACCAGGCGCCGAGCTCGGCGCCCAGCAACATGCCg                                                                                                                               <  1:1000984/150‑1 (MQ=255)
                        aGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCgg                                                                                                                              >  2:2081585/1‑150 (MQ=255)
                             ggCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCaa                                                                                                                         <  1:2236390/150‑1 (MQ=255)
                             ggCATCTAGTCATGCTGCCAGGACCGCGGAATGAACCGGGATATCAGCGACAGCACGCAGGCCAGCGCACAGCTGCCGCCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACTCGGCGCCGAGCGCGGCGCCTAGCAACATGTCGGCACaa                                                                                                                         <  2:724062/150‑1 (MQ=255)
                               cATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAgg                                                                                                                       <  2:1308738/150‑1 (MQ=255)
                                  catgCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCAc                                                                                                                    >  2:158736/4‑150 (MQ=255)
                                     gCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCatgtt                                                                                                                 >  2:1178693/1‑146 (MQ=255)
                                       cctgCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACt                                                                                                               >  2:389120/4‑150 (MQ=255)
                                       cACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACt                                                                                                               >  1:186267/1‑150 (MQ=255)
                                        aCGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAgg                                                                                                                       >  2:1505683/1‑141 (MQ=255)
                                        aCGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAgg                                                                                                                       <  1:1505683/141‑1 (MQ=255)
                                             gCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGCGCTCGGCGcctg                                                                                                                                          <  1:2373358/117‑3 (MQ=255)
                                             gCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGCGCTCGGCGcctg                                                                                                                                          >  2:2373358/1‑115 (MQ=255)
                                             gCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCAccc                                                                                                         >  1:920879/1‑150 (MQ=255)
                                              ccAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCg                                                                                                        >  2:477968/1‑150 (MQ=255)
                                              ccACGACCGCTGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCCGCCCAAGGCACCAACTGCACCCg                                                                                                        >  2:226883/1‑150 (MQ=255)
                                               cAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGc                                                                                                       >  1:341267/1‑150 (MQ=255)
                                               cAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAAACAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGc                                                                                                       >  1:2256790/1‑150 (MQ=255)
                                                 ggACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCa                                                                                                     <  2:449749/150‑1 (MQ=255)
                                                   aCCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAAACAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGc                                                                                                   <  2:2256790/150‑1 (MQ=255)
                                                    ccGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGcc                                                                                                  >  1:354044/1‑150 (MQ=255)
                                                         gAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTgc                                                                                             <  1:609504/150‑1 (MQ=255)
                                                           aTGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTgcgc                                                                                           <  1:2081585/150‑1 (MQ=255)
                                                              aaCCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGcgccgc                                                                                        >  1:979651/1‑150 (MQ=255)
                                                                ccGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGCGCTCGGCGcctg                                                                                                                                          >  1:1884063/1‑96 (MQ=255)
                                                                ccGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGCGCTCGGCGcctg                                                                                                                                          <  2:1884063/98‑3 (MQ=255)
                                                                 cgcgATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCg                                                                                     >  1:969150/1‑150 (MQ=255)
                                                                        tCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCcagca                                                                              <  1:1254287/150‑1 (MQ=255)
                                                                          aGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAgg                                                                                                                       >  2:730060/1‑107 (MQ=255)
                                                                          aGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAgg                                                                                                                       <  1:730060/107‑1 (MQ=255)
                                                                          aGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCagcagc                                                                            <  2:2097841/150‑1 (MQ=255)
                                                                          aGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCagcagc                                                                            >  2:1802538/1‑150 (MQ=255)
                                                                              ccAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCa                                                                                                            <  2:1010930/114‑1 (MQ=255)
                                                                              ccAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCa                                                                                                            >  1:1010930/1‑114 (MQ=255)
                                                                               cAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACg                                                                       >  2:1359280/1‑150 (MQ=255)
                                                                                     gCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCACAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCCGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCAAg                                                                 >  2:468306/1‑150 (MQ=255)
                                                                                       aGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGc                                                               >  2:1324685/1‑150 (MQ=255)
                                                                                       aGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGc                                                               >  1:1126145/1‑150 (MQ=255)
                                                                                           cAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCcgcg                                                           >  2:2295925/1‑150 (MQ=255)
                                                                                             gcgcACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGc                                                         <  2:124302/150‑1 (MQ=255)
                                                                                               gcACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCg                                                       >  2:807376/1‑150 (MQ=255)
                                                                                                   aGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAAc                                                   >  2:1255987/1‑150 (MQ=255)
                                                                                                     cTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAAcgc                                                 <  1:389120/150‑1 (MQ=255)
                                                                                                      tGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGGCACTAGCAACAGGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAAcgcg                                                >  2:934159/1‑150 (MQ=255)
                                                                                                      tGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCcagcag                                                                             <  2:1604387/121‑1 (MQ=255)
                                                                                                      tGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCcagcag                                                                             >  1:1604387/1‑121 (MQ=255)
                                                                                                      tGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAAcgcg                                                >  1:567412/1‑150 (MQ=255)
                                                                                                        ccGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGAc                                              >  2:1529280/1‑150 (MQ=255)
                                                                                                           gCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAgg                                           <  1:158736/150‑1 (MQ=255)
                                                                                                           gCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAgg                                           <  1:1802538/150‑1 (MQ=255)
                                                                                                                        ggCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGt                              <  2:2091508/150‑1 (MQ=255)
                                                                                                                         ttcatcgtgtTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTa                             <  1:1916009/144‑1 (MQ=255)
                                                                                                                         gCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGTGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTa                             >  1:91096/1‑150 (MQ=255)
                                                                                                                          cccAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTgc                                                                                             >  2:1245112/1‑85 (MQ=255)
                                                                                                                          cccAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTgc                                                                                             <  1:1245112/85‑1 (MQ=255)
                                                                                                                          cccAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTaa                            <  2:2168393/150‑1 (MQ=255)
                                                                                                                           ccAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCaa                                                                         <  1:1221824/104‑1 (MQ=255)
                                                                                                                           ccAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCaa                                                                         >  2:1221824/1‑104 (MQ=255)
                                                                                                                           ccAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAg                           >  2:1303260/1‑150 (MQ=255)
                                                                                                                              ggggttgttGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCa                        <  2:969150/147‑1 (MQ=255)
                                                                                                                                tgttgtTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAgg                      <  2:1126145/150‑1 (MQ=255)
                                                                                                                                 gttgttGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGc                     <  2:186267/150‑1 (MQ=255)
                                                                                                                                    gttgCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGACCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGa                  <  2:341267/150‑1 (MQ=255)
                                                                                                                                     ttgCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGAt                 <  1:2071952/150‑1 (MQ=255)
                                                                                                                                       gCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATgg               >  1:1425329/1‑150 (MQ=255)
                                                                                                                                       gCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATgg               >  2:489459/1‑150 (MQ=255)
                                                                                                                                         aaCCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGc             >  1:270972/1‑150 (MQ=255)
                                                                                                                                          aCCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCa            <  1:306937/150‑1 (MQ=255)
                                                                                                                                           ccAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAg           <  2:567412/150‑1 (MQ=255)
                                                                                                                                           ccAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAg           >  1:1169173/1‑150 (MQ=255)
                                                                                                                                           ccAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTCACGTAAGTCAGGCCGATGGGCAg           <  1:2132231/150‑1 (MQ=255)
                                                                                                                                            tgggCGCCGCGCTCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAgg          >  1:818428/3‑150 (MQ=255)
                                                                                                                                             aGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGtt                                  >  2:1003353/1‑125 (MQ=255)
                                                                                                                                             aGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGtt                                  <  1:1003353/125‑1 (MQ=255)
                                                                                                                                             aGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGc         >  2:1962054/1‑150 (MQ=255)
                                                                                                                                             aGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGc         <  2:1169173/150‑1 (MQ=255)
                                                                                                                                              ggCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAAGGCGGCAGGGCGCCCGGTACATGAGTCAGTCCGATGGGCAGGcc        >  2:126686/1‑150 (MQ=255)
                                                                                                                                               gcgcCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGc                                                         >  2:2380863/1‑100 (MQ=255)
                                                                                                                                               gcgcCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGc                                                         <  1:2380863/100‑1 (MQ=255)
                                                                                                                                                 gcCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGCCAtt     >  1:1880674/1‑150 (MQ=255)
                                                                                                                                                  ccGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGCCATTc    <  1:322021/150‑1 (MQ=255)
                                                                                                                                                    gAGCGCGGCCCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGCCATTCAc  <  1:599297/150‑1 (MQ=255)
                                                                                                                                                     aGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGCCa       <  1:2094290/144‑1 (MQ=255)
                                                                                                                                                     aGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGCCa       >  2:2094290/1‑144 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCAGCACCCGCGCATCGAATGATCAGCGCGGCATGTAGCCACGCTGCCAGGACCGCGGAATGAACCGCGATATCAGCGCCAGCACGCAGGCCAGCGCACAGCTGCCGGCCAGCGCCTGCAGGCCCAGGTGTTGTTGCAACCAGGCGCCGAGCGCGGCGCCCAGCAACATGCCGGCCCAAGGCACCAACTGCACCCGCCAGCCGTTGCGCCGCTCGCCCAGCAGCCAACGCCCCAGGCCGCGGCCGAAACGCGACAGGGCGCCCGTTACGTAAGTCAGGCCGATGGGCAGGCCATTCAC  >  NC_002947/3315478‑3315775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑