| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,341,059 | G→C | 10.0% | P88P (CCC→CCG) ‡ | PP_2937 ← | integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,341,059 | 0 | G | C | 10.0% | 248.6 / 16.2 | 80 | P88P (CCC→CCG) ‡ | PP_2937 | integrase |
| Reads supporting (aligned to +/- strand): ref base G (39/33); new base C (3/5); total (42/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
TCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCACCTTTGCTAGG > NC_002947/3340913‑3341208 | tcgtcAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCgggg < 2:1868399/150‑1 (MQ=255) gTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACCCCGCGTTCATc < 2:637960/150‑1 (MQ=255) tCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATcc < 2:1724498/150‑1 (MQ=255) ttgggccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCca > 1:1606016/1‑150 (MQ=255) tgggccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcag < 1:957219/150‑1 (MQ=255) tgggccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcag < 1:1228732/150‑1 (MQ=255) tgggccaattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcag < 1:198792/150‑1 (MQ=255) caattttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCGAGTTCTAGGAGGAGCTGATCCATTTCGCGTACGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGGGATGAACGCGGGGTTCATCCcacgcatc > 2:366792/1‑150 (MQ=255) attttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag < 1:2394560/150‑1 (MQ=255) attttgggccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCcaggcatcag < 1:2394229/150‑1 (MQ=255) gccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAgg < 2:1096164/150‑1 (MQ=255) gccaattCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAgg > 1:1960644/1‑150 (MQ=255) ttCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGc < 1:965870/150‑1 (MQ=255) tCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCg < 2:1358064/150‑1 (MQ=255) gACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTa < 2:1775690/150‑1 (MQ=255) gACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTa < 1:1982268/150‑1 (MQ=255) tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGgt > 1:233018/1‑150 (MQ=255) tCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGgt > 2:920704/1‑150 (MQ=255) cTTCTCCAGCTCCGTAGTGTCTGTGGAGTGGCGTATCCATTGCTCTTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTc < 2:263930/150‑1 (MQ=255) ttCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGTGTAGGTGTGGCGGGTGTCg > 1:842484/1‑150 (MQ=255) ttCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCg > 2:1460696/1‑150 (MQ=255) cAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAgg < 1:1917437/121‑1 (MQ=255) cAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAgg > 2:1917437/1‑121 (MQ=255) ctccctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACg > 2:2165036/1‑150 (MQ=255) ccctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATcc > 2:379288/1‑99 (MQ=255) ccctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATcc < 1:379288/99‑1 (MQ=255) cctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGc < 1:1559770/149‑1 (MQ=255) cctccAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGc > 2:1559770/1‑149 (MQ=255) ctccAGTCCGAGGAGGAGCTGCTCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGt > 2:437076/1‑150 (MQ=255) gaggagCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGttc > 1:217625/1‑150 (MQ=255) gCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTgg < 2:1885360/101‑1 (MQ=255) gCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTgg > 1:1885360/1‑101 (MQ=255) cTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGttcagcgcc > 1:875296/1‑150 (MQ=255) aTCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGttcagcgccttc > 2:858059/1‑150 (MQ=255) cATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGttcagcgccttcagc < 2:1750918/150‑1 (MQ=255) cATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGttcagcgccttcagc > 1:1191577/1‑150 (MQ=255) aTTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCTAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGttcagcgccttcagcg > 1:171090/1‑150 (MQ=255) aTTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg > 2:1364083/1‑107 (MQ=255) aTTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg < 1:1364083/107‑1 (MQ=255) gcgTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGAt > 2:1500449/1‑150 (MQ=255) gtaggtagAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGAttt > 2:973704/1‑150 (MQ=255) gtagAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg > 2:1011663/1‑96 (MQ=255) gtagAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg < 1:1011663/96‑1 (MQ=255) gtagAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAg > 1:978762/1‑150 (MQ=255) gagCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTa > 2:2154467/1‑99 (MQ=255) gagCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTa < 1:2154467/99‑1 (MQ=255) gCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGa < 1:437076/150‑1 (MQ=255) cAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGAt > 2:1540650/1‑150 (MQ=255) aaCATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTc > 2:599991/1‑92 (MQ=255) aaCATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTc < 1:599991/92‑1 (MQ=255) aaCATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGAtt < 1:1460696/150‑1 (MQ=255) aCATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTg > 2:2304470/1‑150 (MQ=255) tcGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGCAaca > 1:848999/1‑150 (MQ=255) gACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTa > 2:1122003/1‑69 (MQ=255) gACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTa < 1:1122003/69‑1 (MQ=255) gACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCCCGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACt > 2:491008/1‑150 (MQ=255) gACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACt < 1:2053702/150‑1 (MQ=255) aCGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACtt < 2:1960644/150‑1 (MQ=255) aCGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACtt < 2:1646293/150‑1 (MQ=255) gCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTgg < 1:973704/150‑1 (MQ=255) gCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTgg < 2:875296/150‑1 (MQ=255) gCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTgg > 2:856607/1‑150 (MQ=255) cTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGc < 2:1606016/150‑1 (MQ=255) cctatgcctgatgcctggGATGAACCCCGCGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCAc < 2:111810‑M1/77‑1 (MQ=255) cctatgcctgatgcctggGATGAACCCCGCGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCAc > 1:111810‑M1/19‑95 (MQ=255) ccAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGAGCCTGCAGCCCCTAGTGTAGGGTGCGGATTGTAACACTTGGCTCGttt > 2:1600369/1‑149 (MQ=255) cAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg > 1:611212/1‑68 (MQ=255) cAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg < 2:611212/68‑1 (MQ=255) tCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGcc > 1:1842293/1‑150 (MQ=255) tCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGcc > 2:1527900/1‑150 (MQ=255) tCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGAAGACGTGCACGGATGTTCAGCGCCTTCAGAGCCGATTTGAATGGGCGGATTGTAACACGTGGCTCGTTGATCCACAGcc > 1:1364857/1‑150 (MQ=255) tggGATGAACCCCGCGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg > 2:898369‑M1/4‑58 (MQ=255) tggGATGAACCCCGCGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCgg < 1:898369‑M1/55‑1 (MQ=255) GATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCATTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCAcc < 1:451057‑M1/150‑1 (MQ=255) GATGAACCCCGCGTTCATCCCAGGCATCAGGCATAGGGTGGCGTGGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCAcc < 2:2013173‑M1/150‑1 (MQ=255) GATGAACCCCGCGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGAc > 1:1231905‑M1/1‑68 (MQ=255) GATGAACCCCGCGTTCAGCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGAc < 2:1231905‑M1/68‑1 (MQ=255) GAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGTCTATGTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCACCttt > 2:1191577‑M1/1‑150 (MQ=255) GAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCACCttt < 1:1107429‑M1/150‑1 (MQ=255) GAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCACCttt > 1:858059‑M1/1‑150 (MQ=255) ACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCACCTTTGc > 1:1600369‑M1/1‑150 (MQ=255) gcgGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGtt > 2:1958996/1‑128 (MQ=255) gcgGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGtt < 1:1958996/128‑1 (MQ=255) ggggTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGCTCCACAGCCCACCTTTGCTAgg < 2:217625/150‑1 (MQ=255) ggggTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCACCTTTGCTAgg < 1:1857959/150‑1 (MQ=255) | TCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCCTCCAGTCCGAGGAGGAGCTGATCCATTTCGCGTAGGTAGAGAGCAACATCTCGACGCTGTGGCCAAGCTGGCTCGCGATGAACGCGGGGTTCATCCCAGGCATCAGGCATAGGGTGGCGTAGGTGTGGCGGGTGTCGTACTGACGGCGTTCACGGATGTTCAGCGCCTTCAGCGCCGATTTGAAGTGGCGGATTGTAACACTTGGCTCGTTGATCCACAGCCCACCTTTGCTAGG > NC_002947/3340913‑3341208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |