Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,380,583 T→A 6.2% L71Q (CTG→CAG)  tnpT‑I → cointegrate resolution protein T

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,380,5830TA 6.2% 355.4 / 9.8 113L71Q (CTG→CAG) tnpT‑Icointegrate resolution protein T
Reads supporting (aligned to +/- strand):  ref base T (56/50);  new base A (4/3);  total (60/53)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01

Only 100 of 115 total aligned reads displayed.

CGAGAACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCG  >  NC_002947/3380437‑3380732
                                                                                                                                                  |                                                                                                                                                     
cGAGAACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGt                                                                                                                                                    >  1:1903557/1‑150 (MQ=255)
cGAGAACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGt                                                                                                                                                    <  1:1796720/150‑1 (MQ=255)
 gagaACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGTCAACCTGGTc                                                                                                                                                   >  1:427708/1‑150 (MQ=255)
       ccAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCaa                                                                                                                                             >  1:1204831/1‑150 (MQ=255)
       ccAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCGACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCCCCCCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCac                                                                                                                                             >  1:1942162/1‑149 (MQ=255)
                 aCGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATc                                                                                                                                   <  1:627434/150‑1 (MQ=255)
                  cgcgGTACGGGTCGAACTTGGCCATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCa                                                                                                                                  <  1:76784/150‑1 (MQ=255)
                     ggTACGGGTCGAACTTGGCAATACCGGNTCGAAAACCACCNTTCACCNCNACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCCAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCt                                                                                                                               >  1:1229953/1‑150 (MQ=255)
                        aCGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGc                                                                                                                                        >  2:1284057/1‑138 (MQ=255)
                        aCGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGc                                                                                                                                        <  1:1284057/138‑1 (MQ=255)
                        aCGGGTCGAACTTAGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTaga                                                                                                                            <  2:1910564/150‑1 (MQ=255)
                         cGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTagag                                                                                                                           <  2:1293052/150‑1 (MQ=255)
                         cGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTagag                                                                                                                           <  1:2121880/150‑1 (MQ=255)
                             tCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGaggagg                                                                                                                       >  2:2178153/1‑150 (MQ=255)
                              cGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAggagga                                                                                                                      <  1:2178153/150‑1 (MQ=255)
                                aaCTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGCGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATTAGCTAGAGGAGGATg                                                                                                                    >  1:607848/1‑150 (MQ=255)
                                aaCTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATg                                                                                                                    <  2:1673435/150‑1 (MQ=255)
                                  cTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGAt                                                                                                                     >  2:436788/1‑147 (MQ=255)
                                   ttGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGATGATgcgc                                                                                                                 >  2:15998/1‑150 (MQ=255)
                                    tGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCa                                                                                                                <  2:1204831/150‑1 (MQ=255)
                                     ggCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAg                                                                                                               >  2:2358951/1‑150 (MQ=255)
                                       cAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGc                                                                                                             <  1:79712/150‑1 (MQ=255)
                                             cGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTa                                                                                                                              <  1:1444993/127‑1 (MQ=255)
                                             cGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGt                                                                                                       >  1:1580287/1‑150 (MQ=255)
                                                 tCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGcc                                                                                                   >  1:2085411/1‑150 (MQ=255)
                                                     aaaCCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAgagga                                                                                                                         <  2:720210/124‑1 (MQ=255)
                                                     aaaCCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAgagga                                                                                                                         >  1:720210/1‑124 (MQ=255)
                                                         caccaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATg                                                                                                                    >  2:1388644/1‑125 (MQ=255)
                                                         caccaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAgcg                                                                                           >  2:2032898/1‑150 (MQ=255)
                                                          accaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAg                                                                                                               >  2:508802/1‑129 (MQ=255)
                                                          accaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAg                                                                                                               <  1:508802/129‑1 (MQ=255)
                                                          accaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAgcgc                                                                                          <  1:1763310/150‑1 (MQ=255)
                                                           ccaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGcgcg                                                                                         >  1:1418312/1‑150 (MQ=255)
                                                           ccaTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTCGCCCAAGAgcgca                                                                                         >  2:280360/1‑149 (MQ=255)
                                                           ccaTTCACCGCTACCTGAAAGAACTAGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGcgcg                                                                                         <  1:613890/150‑1 (MQ=255)
                                                             aTTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGaa                                                                                       >  1:934093/1‑150 (MQ=255)
                                                                 aCCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGaacaac                                                                                   >  1:2376859/1‑150 (MQ=255)
                                                                   cGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTa                                                                                 <  2:1898728/150‑1 (MQ=255)
                                                                         cTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAAcgc                                                                           >  2:1591047/1‑150 (MQ=255)
                                                                           gAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGa                                                                                              >  1:775749/1‑129 (MQ=255)
                                                                           gAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGa                                                                                              <  2:775749/129‑1 (MQ=255)
                                                                               gAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACgg                                                                     >  2:1435644/1‑150 (MQ=255)
                                                                                   tCGAAGACGCCGAGCGCGGCCGAAATGCCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCg                                                                 >  2:491584/1‑150 (MQ=255)
                                                                                   tCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCg                                                                 >  1:2163777/1‑150 (MQ=255)
                                                                                   tCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCg                                                                 >  2:175802/1‑150 (MQ=255)
                                                                                     gAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACt                                                                                                                                           <  1:1209432/74‑1 (MQ=255)
                                                                                          cGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCa                                                          >  2:1523394/1‑150 (MQ=255)
                                                                                           gCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCGACCAGGttg                                                                                                                                                  >  1:815016/1‑59 (MQ=38)
                                                                                           gCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCGACCAGGttg                                                                                                                                                  <  2:815016/61‑3 (MQ=38)
                                                                                             cGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGaa                                                       <  2:2085411/150‑1 (MQ=255)
                                                                                                 cgcgGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGTCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCaa                                                   <  2:427708/150‑1 (MQ=255)
                                                                                                  gcgGCCGAAATGCCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAg                                                  <  1:491584/150‑1 (MQ=255)
                                                                                                  gcgGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAg                                                                                                               >  1:874419/1‑89 (MQ=255)
                                                                                                  gcgGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAg                                                                                                               <  2:874419/89‑1 (MQ=255)
                                                                                                      ccGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCg                                              >  1:1456265/1‑150 (MQ=255)
                                                                                                       cGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGATGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCgg                                             <  1:15998/150‑1 (MQ=255)
                                                                                                        gAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGc                                            >  2:665336/1‑150 (MQ=255)
                                                                                                        gAAATACCCCCGCGATACCGCTCAGCGAACAGTTGGCCAATCTGCTCGGCCCACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCAACGTGGCTCAGGAGCGCAAACAACTATTACGCGAACGGCTCGATTACCAGAACCAAgggcggt                                            <  2:607848/150‑7 (MQ=255)
                                                                                                          aaTACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTg                                          >  2:72716/1‑150 (MQ=255)
                                                                                                            tACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCa                                                                                                 <  1:390806/93‑1 (MQ=255)
                                                                                                            tACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCa                                                                                                 >  2:390806/1‑93 (MQ=255)
                                                                                                            tACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGc                                        <  1:1523394/150‑1 (MQ=255)
                                                                                                            tACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGc                                        <  1:1037413/150‑1 (MQ=255)
                                                                                                                 ccgcGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCGAGCTCGGCTGGCCGaaa                                   <  2:1229953/150‑1 (MQ=255)
                                                                                                                    cgATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGcc                                <  2:1580287/150‑1 (MQ=255)
                                                                                                                     gATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCg                               >  1:1461574/1‑150 (MQ=255)
                                                                                                                         ccGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATc                           <  1:1546256/150‑1 (MQ=255)
                                                                                                                          cGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAg                                  >  1:992327/1‑142 (MQ=255)
                                                                                                                           gCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCca                         <  1:665336/150‑1 (MQ=255)
                                                                                                                           gCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCca                         >  1:574494/1‑150 (MQ=255)
                                                                                                                           gCTCAGCGAACAGGTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCca                         >  2:95458/1‑150 (MQ=255)
                                                                                                                            cTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCcag                        <  2:2163777/150‑1 (MQ=255)
                                                                                                                                gCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGAt                                                                                                                     <  1:1117988/53‑1 (MQ=255)
                                                                                                                                gCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGAt                                                                                                                     >  2:1117988/1‑53 (MQ=255)
                                                                                                                                 cGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACCACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGtt                   <  2:1418312/150‑1 (MQ=255)
                                                                                                                                 cGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCaa                                                   <  2:2447/118‑1 (MQ=255)
                                                                                                                                 cGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCaa                                                   >  1:2447/1‑118 (MQ=255)
                                                                                                                                 cGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGc                                        <  1:1088549/129‑1 (MQ=255)
                                                                                                                                 cGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGc                                        >  2:1088549/1‑129 (MQ=255)
                                                                                                                                 cGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGtt                   <  2:1456265/150‑1 (MQ=255)
                                                                                                                                  tgccAGTTGGCCGACCAGGTTGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCcagca                      >  2:1973557/4‑146 (MQ=255)
                                                                                                                                  tgccAGTTGGCCGACCAGGTTGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCcagca                      <  1:1973557/143‑1 (MQ=255)
                                                                                                                                  gAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTg                  >  2:814890/1‑150 (MQ=255)
                                                                                                                                      aGTTGGCCGACCAGGTTGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGaaa              >  1:38027/1‑150 (MQ=255)
                                                                                                                                      aGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGaaa              <  2:1926800/150‑1 (MQ=255)
                                                                                                                                          ggCCGACCAGGTTGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAAt                            <  2:981080/132‑1 (MQ=255)
                                                                                                                                          ggCCGACCAGGTTGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAAt                            >  1:981080/1‑132 (MQ=255)
                                                                                                                                          ggCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCa          <  2:1461574/150‑1 (MQ=255)
                                                                                                                                           gCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGaaa                                   >  2:646639/1‑124 (MQ=255)
                                                                                                                                           gCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCag         >  1:1942815/1‑150 (MQ=255)
                                                                                                                                             cAAGCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACaa                                                                              >  2:2333706/1‑79 (MQ=255)
                                                                                                                                             cAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACaa                                                                              <  1:2333706/79‑1 (MQ=255)
                                                                                                                                             cAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCagag       >  2:983233/1‑150 (MQ=255)
                                                                                                                                              aaCCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGagc      >  2:2125255/1‑150 (MQ=255)
                                                                                                                                                ccTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAg                                                  >  1:1627877/1‑104 (MQ=255)
                                                                                                                                                ccTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAg                                                  <  2:1627877/104‑1 (MQ=255)
                                                                                                                                                 cTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGagcagc   >  2:732723/1‑150 (MQ=255)
                                                                                                                                                 cTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGagcagc   <  1:809231/150‑1 (MQ=255)
                                                                                                                                                  tGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCg  >  1:2190750/1‑150 (MQ=255)
                                                                                                                                                  tGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCg  >  1:1874728/1‑150 (MQ=255)
                                                                                                                                                  |                                                                                                                                                     
CGAGAACCCAAGCATCGACGCGGTACGGGTCGAACTTGGCAATACCGGCTCGAAAACCACCATTCACCGCTACCTGAAAGAACTCGAAGACGCCGAGCGCGGCCGAAATACCGCCGCGATACCGCTCAGCGAACAGTTGGCCAACCTGGTCGGCCAACTGGCAGATCAGCTAGAGGAGGATGCGCAGGCCACCGTGGCCCAGGAGCGCGAACAACTACAACGCGAACGGCTCGATTACCAGAACCAAGCTCGGCTGGCCGAAAGCCGAATCCAGCAGTTGGAAAGTCAGAGCAGCG  >  NC_002947/3380437‑3380732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑