| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,402,563 | T→A | 7.2% | intergenic (+44/‑108) | PP_3010 → / → PP_3011 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,402,563 | 0 | T | A | 7.2% | 262.7 / 9.6 | 83 | intergenic (+44/‑108) | PP_3010/PP_3011 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (39/38); new base A (4/2); total (43/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.44e-01 | |||||||||||
GGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCAAGAAGCGTA > NC_002947/3402421‑3402712 | ggCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTtgtgt < 1:957022/150‑1 (MQ=255)ggCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACAAAAAGCCCGCTCTCGACGGCGGGCTATTggtgt > 2:116311/1‑150 (MQ=38) cGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACAAAAAGCCCGCTCTCGACGGCGGGCTATTggtgtgggg < 1:116311/150‑4 (MQ=37) agcgagcgCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGc < 1:1794131/150‑1 (MQ=255) cgcCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGCCAGGTTGCAGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGccc > 1:857384/1‑150 (MQ=255) cACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGccc > 2:2193982/1‑147 (MQ=255) cACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGccc < 1:2193982/147‑1 (MQ=255) tCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACg < 2:2311813/150‑1 (MQ=255) cACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCTCTCGACGGCGGGCTATTggtgtgggggt < 2:1682880/133‑6 (MQ=37) cACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCTCTCGACGGCGGGCTATTggtgtgggggt > 1:1682880/1‑128 (MQ=37) aTCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑aaaaaa > 2:1166826/1‑150 (MQ=255) aTCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑aaaaaa > 2:1166779/1‑150 (MQ=255) tCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑aaaaaaa > 2:2162037/1‑150 (MQ=255) tCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑aaaaaaa > 1:1298591/1‑150 (MQ=255) tCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑aaaaaaa < 1:264259/150‑1 (MQ=255) tCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATATGTCAACAACCGTAGTCATTCAACCCCCACATCACTAGGCAGCCGTCGCGAGCGGGCTTTTTGCGTGCCCGTCGTCTTGCAGGCCACGTTctacagca > 2:30535/1‑143 (MQ=255) aaCGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAgg > 2:2123629/1‑150 (MQ=255) ccTGGTACGACCATAGCAGGTTGCTGGATGCAGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGACGTCGAGAGCGGGCTTATTGTGTGCCCATCGACTGCCCGGAAACATTC‑AAAAAAAGGGCGGGTGGa < 2:28414/150‑1 (MQ=255) cTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAg > 2:2262432/1‑150 (MQ=255) gTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCg < 2:1888254/150‑1 (MQ=255) tACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCgg > 2:1528319/1‑150 (MQ=255) cGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTATTCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTa < 1:147434/150‑1 (MQ=255) cGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGTTa < 2:1298591/150‑1 (MQ=255) gACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTAt > 2:432816/1‑150 (MQ=255) cATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGAAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGc < 2:2127186/150‑1 (MQ=255) tGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCt < 2:970819/150‑1 (MQ=255) tGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCt > 2:963102/1‑150 (MQ=255) ggTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGagca < 1:1166826/150‑1 (MQ=255) ggTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGagca < 1:1166779/150‑1 (MQ=255) gTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCg < 2:1942439/135‑1 (MQ=255) gTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCg > 1:1942439/1‑135 (MQ=255) gCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCAATCGCCTGCCCGGCAACCTTC‑GCAAAACGGGCGGAAGCGTCCGGGATGGCCTGAGCAGCGt > 2:22019/1‑150 (MQ=255) cTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGtt < 2:662233/150‑1 (MQ=255) cTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCACAACCAGAATAACCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGtt < 2:1270449/150‑1 (MQ=255) ggATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGc > 2:647920/1‑150 (MQ=255) gATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCt > 2:973289/1‑150 (MQ=255) tgctgcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCATACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCttt < 1:1893086/150‑1 (MQ=255) tgctgcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTTCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAAGGTGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCttt < 1:1769421/150‑1 (MQ=255) gctgcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTg < 1:963102/150‑1 (MQ=255) tgcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCa > 1:952974/1‑150 (MQ=255) tgcACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATAGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCa > 1:603815/1‑150 (MQ=255) cTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATAGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTg < 2:603815/150‑1 (MQ=255) aTGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCg < 1:2123629/150‑1 (MQ=255) ttCAACAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGcccc > 1:2306218/1‑150 (MQ=255) ttCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGcccc > 1:2381418/1‑150 (MQ=255) ttCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGcccc > 2:575857/1‑150 (MQ=255) aaaaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTg > 2:361626/1‑73 (MQ=255) aaaaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTg < 1:361626/73‑1 (MQ=255) aaaaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGc < 1:2211840/106‑1 (MQ=255) aaaaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGc > 2:2211840/1‑106 (MQ=255) aaaaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGTCGGCcccgcc > 1:2260420/1‑150 (MQ=255) aaaGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCcccgccc < 1:432816/150‑1 (MQ=255) tcCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAAGGGCGGGTGGAGCCGGTATg > 2:1141493/1‑101 (MQ=255) tcCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGa < 1:2357147/106‑1 (MQ=255) tcCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGa > 2:2357147/1‑106 (MQ=255) gccAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTCAAAAAAAAGGGCGGGTGGAGCCGGTATg < 1:1141493/100‑1 (MQ=255) aaCCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCGTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGTCTTAGCAGCGTTGCTTTGCATTTTGCGGCCCCGCCCGTAATATTCGTTGTa > 1:881619/1‑150 (MQ=255) aaCCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCa > 1:2276919/1‑119 (MQ=255) aaCCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCa < 2:2276919/119‑1 (MQ=255) atgggcacacaAAAAGCCCGCTCTCGACGGCGGGCTATTGGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTAGGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAt > 2:8293/6‑150 (MQ=37) ccccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt > 1:1563626/1‑150 (MQ=255) ccccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt > 1:961219/1‑150 (MQ=255) ccccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt < 1:2162037/150‑1 (MQ=255) ccccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt < 1:647920/150‑1 (MQ=255) ccccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAttt > 1:1402788/1‑150 (MQ=255) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCttt > 2:585007/1‑111 (MQ=255) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCttt < 1:585007/111‑1 (MQ=255) ccACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTGGCTTTGCAGTTTCCGGCCCCGCCCGTAATATTCGTTGTATTtgg > 2:1476053/1‑150 (MQ=255) cacaCCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGTGGGGGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtgga > 2:1288559/1‑150 (MQ=255) acacCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTA‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTTCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggat > 2:505518/1‑150 (MQ=255) acaaaaaGCCCGCTCTCGACGGCGGGCTATTGGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTAt > 2:1799798/7‑142 (MQ=38) acCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTtggatgg > 1:836882/1‑150 (MQ=255) aGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTc < 2:1555784/150‑1 (MQ=255) cccGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGc < 1:2262432/150‑1 (MQ=255) cccGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGc > 2:1652165/1‑150 (MQ=255) cgccgTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGtt < 2:663980/128‑1 (MQ=255) cgccgTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGtt > 1:663980/1‑128 (MQ=255) ccgTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGt < 2:2306218/150‑1 (MQ=255) ccgTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTGGGATGGAGAGTCGCAGGt < 1:973289/150‑1 (MQ=255) cGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGaa < 1:1652165/150‑1 (MQ=255) gagaGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAg > 1:100705/1‑150 (MQ=255) agCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCaa < 1:1520609/150‑1 (MQ=255) gggCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCaagaa < 1:200983/150‑1 (MQ=255) tttttGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGgag > 1:1726440/1‑125 (MQ=255) tttttGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGgag < 2:1726440/125‑1 (MQ=255) tttttGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCAAGAAGCGt > 2:1318193/1‑150 (MQ=255) ttttGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCAAGAAGCGTa < 2:683416/150‑1 (MQ=255) ttttGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCAAGAAGCGTa < 2:1181993/150‑1 (MQ=255) ttttGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCAAGAAGCGTa < 2:836882/150‑1 (MQ=255) | GGCACGGGAAGCGAGCGCCACTTCACGGCCTATCAACGTGATGCCTGGTACGACCATGGCAGGTTGCTGGATGCTGCACTGATGTGTTCAAAAGCGTAATCATCCAACCCCCACACCAATAGCCCGCCGTCGAGAGCGGGCTTTTTGTGTGCCCATCGCCTGCCCGGCAACGTTC‑AAAAAAAGGGCGGGTGGAGCCGGTATGGCCTGAGCAGCGTTGCTTTGCATTTGCCGGCCCCGCCCGTAATATTCGTTGTATTTGGATGGAGAGTCGCAGGTGGAAGCAAGAAGCGTA > NC_002947/3402421‑3402712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |