Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,489,703 G→C 5.1% A577A (GCC→GCG)  clpV ← protein ClpV1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,489,7030GC 5.1% 317.5 / 6.2 99A577A (GCC→GCG) clpVprotein ClpV1
Reads supporting (aligned to +/- strand):  ref base G (45/49);  new base C (2/3);  total (47/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01

GTCTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCACGCGCGCCAGCTCG  >  NC_002947/3489560‑3489850
                                                                                                                                               |                                                                                                                                                   
gTCTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGc                                                                                                                                               >  2:847803/1‑150 (MQ=255)
 tCTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCa                                                                                                                                              <  1:750395/150‑1 (MQ=255)
  cTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGTCAATCGGTTTGTTCGGGTCTTCCATGAGAATGAAGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAg                                                                                                                                             <  1:419690/150‑1 (MQ=255)
  cTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAg                                                                                                                                             <  2:862341/150‑1 (MQ=255)
       cGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCt                                                                                                                                        >  1:1661853/1‑150 (MQ=255)
            ccgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACg                                                                                                                                   <  2:1260576/150‑1 (MQ=255)
            ccgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACg                                                                                                                                   <  1:1158929/150‑1 (MQ=255)
            ccgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGCGCCTGCCGGCCCTGcttg                                                                                                                                   <  1:2221533/150‑4 (MQ=255)
            ccgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGAGTGTTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACg                                                                                                                                   <  1:2243662/150‑1 (MQ=255)
             cgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCCCCAAGCAGGGCCGGCAGGCGCTGCACgg                                                                                                                                  >  2:858735/1‑150 (MQ=255)
             cgcTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACgg                                                                                                                                  <  2:345498/150‑1 (MQ=255)
               cTGGGGCCGAGCAGCAGGAACACGCGAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGAGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTa                                                                                                                                <  2:237002/150‑1 (MQ=255)
               cTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTa                                                                                                                                <  2:830542/150‑1 (MQ=255)
                tGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTAt                                                                                                                               <  2:937885/150‑1 (MQ=255)
                 ggggCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATc                                                                                                                              <  2:650228/150‑1 (MQ=255)
                 ggggCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATc                                                                                                                              <  2:848702/150‑1 (MQ=255)
                    gacGAGCAGCAGGAACTCGCCAATCGGTTTGTTCGGTTCTTCCATGCGCGCTCGGGAAATCTTGATGCGGTTTCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGAt                                                                                                                           <  1:1489992/148‑1 (MQ=255)
                      cGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGTAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGAttt                                                                                                                         <  2:327570/150‑1 (MQ=255)
                      cGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGAttt                                                                                                                         <  2:2170268/150‑1 (MQ=255)
                      cGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGCGCCTGCCGGCCCTGcttgg                                                                                                                                  <  1:2355791/141‑5 (MQ=255)
                      cGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGCGCCTGCCGGCCCTGcttgg                                                                                                                                  >  2:2355791/1‑137 (MQ=255)
                       gAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGa                                                                                                                            <  1:581973/146‑1 (MQ=255)
                       gAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGa                                                                                                                            >  2:581973/1‑146 (MQ=255)
                           agcagGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCa                                                                                                                    >  1:2116999/1‑150 (MQ=255)
                            gcagGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCAc                                                                                                                   <  2:250517/150‑1 (MQ=255)
                            gcagGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCAc                                                                                                                   >  2:1691162/1‑150 (MQ=255)
                              agGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACgc                                                                                                                 >  2:2288086/1‑150 (MQ=255)
                                   cacGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCGCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGGGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCAt                                                                                                            <  1:1737363/150‑1 (MQ=255)
                                      gCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCAGGGTATCGATTTCGTCACGCAGCATCtt                                                                                                         <  1:1684168/150‑1 (MQ=255)
                                      gCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTAGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCtt                                                                                                         >  2:2125580/1‑150 (MQ=255)
                                       ccAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTg                                                                                                        <  1:1704889/150‑1 (MQ=255)
                                         aaTCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGcc                                                                                                      >  2:1323199/1‑150 (MQ=255)
                                          aTCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCa                                                                                                                                     <  2:42667/118‑1 (MQ=255)
                                          aTCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCa                                                                                                                                     >  1:42667/1‑118 (MQ=255)
                                              gTTTGTTCGGGTCTTCCATGCGCGCTCGGTAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCg                                                                                                 >  2:514651/1‑150 (MQ=255)
                                              gTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCa                                                                                                                    <  2:39156/131‑1 (MQ=255)
                                              gTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCa                                                                                                                    >  1:39156/1‑131 (MQ=255)
                                               tttGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCCGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCgg                                                                                                <  1:1008152/150‑1 (MQ=255)
                                                 tGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGa                                                                                              <  2:656560/150‑1 (MQ=255)
                                                    tCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGc                                                                                           <  1:2288086/150‑1 (MQ=255)
                                                      gggTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCg                                                                                         <  2:1661853/150‑1 (MQ=255)
                                                        gTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGt                                                                                       >  2:1128520/1‑150 (MQ=255)
                                                         tCTTCCATGCGCGCTCGGTAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCTGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTc                                                                                      <  1:514651/150‑1 (MQ=255)
                                                              cATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGcc                                                                                 >  1:1319943/1‑150 (MQ=255)
                                                               aTGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCa                                                                                >  1:845834/1‑150 (MQ=255)
                                                                    cgcTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACtgat                                                                           <  2:2116999/150‑1 (MQ=255)
                                                                    cgcTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACtgat                                                                           <  2:2352519/150‑1 (MQ=255)
                                                                    cgcTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGCGCCTGCCGGCCCTGcttg                                                                                                                                   >  1:1326900/1‑91 (MQ=255)
                                                                    cgcTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGCGCCTGCCGGCCCTGcttg                                                                                                                                   <  2:1326900/94‑4 (MQ=255)
                                                                         gggAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGCTGCCGGTCCAGCCACTGATGACCt                                                                      >  2:364973/1‑150 (MQ=255)
                                                                           gAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTgg                                                                    >  1:184128/1‑150 (MQ=255)
                                                                           gAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTgg                                                                    >  2:617888/1‑150 (MQ=255)
                                                                             aaTCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGc                                                                  <  1:221400/150‑1 (MQ=255)
                                                                             aaTCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGc                                                                  <  1:279375/150‑1 (MQ=255)
                                                                                cTTGATGCGCTTGCCGATCTCATGCAGGGCGTAGTCCTGGAACCGTCAGCGCTCCCTCCGCACGGCCGGCCGGCGCTGCACCGTATAGATTTCCTCACGCATCATCGTGCCCAGCGGGATGCCGGGCCAGCCACTGATGACCTGGGCggt                                                               <  2:2078694/150‑3 (MQ=255)
                                                                                 ttGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATg                                                              <  2:2265886/150‑1 (MQ=255)
                                                                                     tGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGgcgc                                                          >  1:330827/1‑150 (MQ=255)
                                                                                        gcTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGcgccgc                                                       >  1:385803/1‑150 (MQ=255)
                                                                                          ttGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTg                                                     >  1:1443414/1‑150 (MQ=255)
                                                                                          ttGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTg                                                     >  1:819062/1‑150 (MQ=255)
                                                                                          ttGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGAGCCCCAGGGGTTGTTTTTCTTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTTATGACCTGGGCGATGGCGCCGCTg                                                     >  2:695219/1‑150 (MQ=255)
                                                                                           tGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGt                                                    <  1:2027329/150‑1 (MQ=255)
                                                                                            gCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTc                                                   <  2:1319943/150‑1 (MQ=255)
                                                                                              cGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCAc                                                                               >  2:1257597/1‑120 (MQ=255)
                                                                                              cGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCAc                                                                               <  1:1257597/120‑1 (MQ=255)
                                                                                              cGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGa                                                 >  1:1199413/1‑150 (MQ=255)
                                                                                              cGATCTCACGCAGGGCGTGGGCCTGGCCCCGCAAGCGGGCACCAAGCCGGGCGGGCAGGCGCTGCACGGTATCGATTTCGGCACGCAGCATCTGGCCCAGCGGGATGCCGGGCCAGCTACTGATGACCTGGGCGATGGCGCCGCTGTCGa                                                 <  1:1057651/150‑1 (MQ=255)
                                                                                                   tcATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTgg                                                                    >  2:2041294/1‑126 (MQ=255)
                                                                                                   tcATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTgg                                                                    <  1:2041294/126‑1 (MQ=255)
                                                                                                     aTGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAgcgc                                          >  2:204461/1‑150 (MQ=255)
                                                                                                      tGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGACGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGcgcg                                         >  1:1953656/1‑150 (MQ=255)
                                                                                                        cAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTg                                       >  2:245625/1‑150 (MQ=255)
                                                                                                          gggCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGa                                     >  2:4748/1‑150 (MQ=255)
                                                                                                          gggCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGa                                     <  2:184128/150‑1 (MQ=255)
                                                                                                           ggCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGAc                                    >  1:1431464/1‑150 (MQ=255)
                                                                                                           ggCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGAc                                    <  2:845834/150‑1 (MQ=255)
                                                                                                                  tCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGc                             >  2:1405885/1‑150 (MQ=255)
                                                                                                                  tCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATGTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGTGCGATGTCGCTGCTCTGAACCTGCGTGTGAACCAGAgga                             >  2:126509/1‑149 (MQ=255)
                                                                                                                    cTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGAc                                                >  2:1921163/1‑129 (MQ=255)
                                                                                                                    cTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGAc                                                <  1:1921163/129‑1 (MQ=255)
                                                                                                                         ccAGCACGCGCTCACCAATCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGc                      >  1:1288451/1‑150 (MQ=255)
                                                                                                                         ccAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCga                      <  1:617888/150‑2 (MQ=255)
                                                                                                                            gCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCtt                   <  2:148261/150‑1 (MQ=255)
                                                                                                                            gCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCtt                   <  1:1691162/150‑1 (MQ=255)
                                                                                                                             cACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTg                  >  1:2355177/1‑150 (MQ=255)
                                                                                                                              aCGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGc                 >  1:288411/1‑150 (MQ=255)
                                                                                                                                gcgcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCAc               <  1:1323199/150‑1 (MQ=255)
                                                                                                                                gcgcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGATGTATTCGCTGATTACCTGGGCGATGGCGCAGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCAc               >  1:1621718/1‑150 (MQ=255)
                                                                                                                                gcgcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCGTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCACCTGGACCAGTGGCTGGTCGCCTTGCAc               >  2:759335/1‑150 (MQ=255)
                                                                                                                                  gcTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCAcgc             >  1:752242/1‑150 (MQ=255)
                                                                                                                                    tCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCAcgcgc           <  2:2288280/150‑1 (MQ=255)
                                                                                                                                      aCCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATg                                                              >  2:62333/1‑97 (MQ=255)
                                                                                                                                      aCCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATg                                                              <  1:62333/97‑1 (MQ=255)
                                                                                                                                      aCCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCACgcgcgc         >  1:17810/1‑150 (MQ=255)
                                                                                                                                      aCCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCACgcgcgc         >  1:1925713/1‑150 (MQ=255)
                                                                                                                                       ccAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCACGCGCGcc        >  1:1336447/1‑150 (MQ=255)
                                                                                                                                        cAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACtga                                                                            <  1:1059504/81‑1 (MQ=255)
                                                                                                                                        cAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACtga                                                                            >  2:1059504/1‑81 (MQ=255)
                                                                                                                                             aGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCACGCGCGCCAGCTCg  <  2:1288451/150‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                   
GTCTTGCCGACGCCGCTGGGGCCGAGCAGCAGGAACACGCCAATCGGTTTGTTCGGGTCTTCCATGCGCGCTCGGGAAATCTTGATGCGCTTGCCGATCTCATGCAGGGCGTGGTCCTGGCCCAGCACGCGCTCACCAAGCAGGGCCGGCAGGCGCTGCACGGTATCGATTTCGTCACGCAGCATCTTGCCCAGCGGGATGCCGGTCCAGCCACTGATGACCTGGGCGATGGCGCCGCTGTCGACCAGCGCGTGGACCAGTGGCTGGTCGCCTTGCACGCGCGCCAGCTCG  >  NC_002947/3489560‑3489850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑