| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,492,133 | A→T | 7.1% | L110Q (CTG→CAG) | PP_3096 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,492,133 | 0 | A | T | 7.1% | 263.2 / 8.8 | 84 | L110Q (CTG→CAG) | PP_3096 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (38/40); new base T (4/2); total (42/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.68e-01 | |||||||||||
AAGCCCGAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCGGGAACGCCA > NC_002947/3491986‑3492280 | aaGCCCGAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGagcagcagc > 1:1284754/1‑150 (MQ=255) cccGAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCg < 1:1388082/150‑1 (MQ=255) ccGAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCgg > 2:1437993/1‑150 (MQ=255) ccGAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCgg < 2:1284754/150‑1 (MQ=255) cGAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGgt < 2:1509020/150‑1 (MQ=255) gAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCTGCTGCTCgagc < 1:618682/150‑4 (MQ=255) cATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGc > 2:1403893/1‑150 (MQ=255) ttGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGt < 2:2363428/150‑1 (MQ=255) gcgcTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTgg < 1:2233601/150‑1 (MQ=255) gCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGc < 2:2235132/150‑1 (MQ=255) cTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAACCCGcc > 2:894639/1‑150 (MQ=255) gATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGa < 2:2101306/150‑1 (MQ=255) gATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGa > 2:1103916/1‑150 (MQ=255) aTGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGAc < 1:756930/150‑1 (MQ=255) tttttGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGcc < 1:2390508/150‑1 (MQ=255) gCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGa > 1:1939830/1‑150 (MQ=255) tcgggCCTCTTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGaa > 2:2211610/4‑150 (MQ=255) ccAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGaa < 1:219624/150‑1 (MQ=255) ccAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGaa > 1:1615980/1‑150 (MQ=255) cAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTAGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTTTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAg > 2:272326/1‑150 (MQ=255) cAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCACCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAg > 1:301412/1‑150 (MQ=255) cAGGCCTCATAGAACAACGTGGTCATGCGGTGCGAGAAGATGTAGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCACCAGCTCGGTGTACGGGCGTCGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAg < 2:407525/150‑1 (MQ=255) cAGGCCTACTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAg < 1:1309568/150‑1 (MQ=255) aGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAgg > 1:1674270/1‑150 (MQ=255) aGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAgg < 1:1673747/150‑1 (MQ=255) cTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGAc < 2:1363903/150‑1 (MQ=255) tCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGgtg < 2:811620/99‑1 (MQ=255) tCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGgtg > 1:811620/1‑99 (MQ=255) tCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGAcc > 1:971611/1‑150 (MQ=255) tAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGc > 1:1919358/1‑150 (MQ=255) tAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGc > 2:2008400/1‑150 (MQ=255) aGAACATCGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCa < 2:2406894/150‑1 (MQ=255) aacaacGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGccc < 2:714581/122‑1 (MQ=255) aacaacGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGccc > 1:714581/1‑122 (MQ=255) aacaacGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACt > 1:198579/1‑150 (MQ=255) aacGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGgtg > 1:967246/1‑90 (MQ=255) aacGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGgtg < 2:967246/90‑1 (MQ=255) tGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACa > 2:1067750/1‑150 (MQ=255) gCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCaa < 1:1103916/150‑1 (MQ=255) gCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCaa < 2:1615980/150‑1 (MQ=255) tGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAgccg > 1:2388283/1‑150 (MQ=255) gagaAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACCTCCGACAGCGGCAAgccggcc > 1:607983/1‑150 (MQ=255) gagaAGATGTCGAGAAACGCATGGGCGGCATCGTCACGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAgcccgcc > 2:361803/1‑150 (MQ=255) tCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACAcc < 1:1437993/150‑1 (MQ=255) gagaAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCtt < 2:369242/150‑1 (MQ=255) gagaAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCtt > 1:26624/1‑150 (MQ=255) gagaAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCtt > 2:2220251/1‑150 (MQ=255) gaATCGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCTACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGc < 2:260971/150‑1 (MQ=255) gaAAGGCATGGGCGCCATCGTCGAGATACTGTACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGANGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGc < 1:941562/150‑1 (MQ=255) acaCGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGc‑c < 2:1950734/148‑1 (MQ=255) aaaCGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGc‑c > 2:493152/1‑150 (MQ=255) gCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTcg > 1:1736657/1‑150 (MQ=255) cATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTcgc < 1:2220251/150‑1 (MQ=255) cggcATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGt > 2:121384/1‑94 (MQ=255) cggcATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGt < 1:121384/94‑1 (MQ=255) cggcATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGa > 1:403310/1‑150 (MQ=255) ggcATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGaa > 2:1464135/1‑150 (MQ=255) ggcATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGaa < 1:1403893/150‑1 (MQ=255) cATCGTCGCGATACTTCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGACGGCGACACCTTGC‑CTTCGCGCTCGAAGt < 2:1674270/150‑1 (MQ=255) cATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGt > 1:1916750/1‑150 (MQ=255) cATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGt > 2:2404804/1‑150 (MQ=255) aTCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGcc > 2:1131741/1‑81 (MQ=255) aTCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGcc < 1:1131741/81‑1 (MQ=255) aTCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAg < 2:984966/115‑1 (MQ=255) aTCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAg > 1:984966/1‑115 (MQ=255) gtcgCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGCACTTCGAGCGCGAAggcaa < 2:971611/150‑5 (MQ=255) gcgATACTTCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTc > 1:412703/1‑150 (MQ=255) cgATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCg < 2:1919358/150‑1 (MQ=255) aTACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCt < 1:1067750/150‑1 (MQ=255) aTACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCt < 1:874513/150‑1 (MQ=255) tACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAGTGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTg < 1:164397/150‑1 (MQ=255) cTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGAc < 2:1706663/81‑1 (MQ=255) cTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGAc > 1:1706663/1‑81 (MQ=255) ggCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCGGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGAcc < 2:301412/149‑1 (MQ=255) cACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGAc < 1:1099574/78‑1 (MQ=255) cACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGAc > 2:1099574/1‑78 (MQ=255) gTGGAGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCt > 1:2153164/1‑150 (MQ=255) gTGGAGCCCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCt < 2:1978106/150‑1 (MQ=255) gcTCGAGCAGCAGCTCGGTGTACGGGAGCGGGCGCCCGATGCCCGTGCTTCGGAGACCCATGAAGGTGACTAGCACCTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGGAGTGCAGGTCGCTGACCTCGCTGGCCg > 1:421207/1‑150 (MQ=255) accGAGCTGCTGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGc < 2:1975377/108‑1 (MQ=255) accGAGCTGCTGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCgg > 1:500040/3‑150 (MQ=255) accGAGCTGCTGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCgg > 2:1495556/3‑150 (MQ=255) accGAGCTGCTGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCgg > 2:1622769/3‑150 (MQ=255) accGAGCTGCTGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCGGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGc > 1:1975377/3‑110 (MQ=255) tCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCggg > 1:1129874/1‑150 (MQ=255) agcagcagcTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCGGGAAc < 2:2113487/150‑1 (MQ=255) gcagcTCGGTGTACGAGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCGGGAACGACa < 1:493152/150‑1 (MQ=255) | AAGCCCGAGGTGCCATTGCGCTCGTGCTCGATGTGGAATTTGTATTTTTGCCAGGCCTCGTAGAACAACGTGGTCATGCGGTGCGAGAAGATGTCGAGAAACGCATGGGCGGCATCGTCGCGATACTGCACGTGGCGCTCGAGCAGCAGCTCGGTGTACGGGCGTGGCAGCACGCCCGACGGCCCGACCAGGCCCATGAAGGTGACCTGCACTTCCGACAGCGGCAAGCCGGCCGGCGACACCTTGC‑CTTCGCGCTCGAAGTGCAGGTCGCTGACCTCGCTGGCCGGGAACGCCA > NC_002947/3491986‑3492280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |