BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	3,637,784	G→T	7.7%	E107D (GAG→GAT)	PP_3204 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	3,637,784	0	G	T	7.7%	312.0 / 11.2	104	E107D (GAG→GAT)	PP_3204	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (46/50); new base T (5/3); total (51/53)
Fisher's exact test for biased strand distribution p-value = 4.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.94e-01

Only 100 of 107 total aligned reads displayed.

CGACCCTGGACAACGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACAT  >  NC_002947/3637636‑3637933

tgACCCTGGACAACGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCgaga                                                                                                                                                      <  2:351436/149‑1 (MQ=255)

    ccTGGACAACGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCgg                                                                                                                                                  >  2:5965/1‑150 (MQ=255)

    ccTGGACAACGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGAGTGATTCGCAAACTGGACAGACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCgg                                                                                                                                                  >  1:293642/1‑150 (MQ=255)

        gACAACGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCggcgag                                                                                                                                              >  1:615146/1‑150 (MQ=255)

          cAACGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCggcgaggc                                                                                                                                            <  2:1781408/150‑1 (MQ=255)

           aaCGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCggcgaggcg                                                                                                                                           >  1:369191/1‑150 (MQ=255)

            aCGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCggcgaggcga                                                                                                                                          <  2:1923078/150‑1 (MQ=255)

             cGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGgcgaggcgag                                                                                                                                         >  2:757381/1‑150 (MQ=255)

              ggCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGt                                                                                                                                        <  1:2329171/150‑1 (MQ=255)

                 gatgatCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGcc                                                                                                                                     >  1:253663/1‑150 (MQ=255)

                             gcgcAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCaaa                                                                                                                         <  1:937381/150‑1 (MQ=255)

                              cgcAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAg                                                                                                                        <  1:617195/150‑1 (MQ=255)

                               gcAGCCGCTGCAATTGAGCCCTGGCCCTCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCCTCGCCGAGATCggcga                                                                                                                                               <  1:740168/126‑1 (MQ=255)

                               gcAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGc                                                                                                                       >  1:1170478/1‑150 (MQ=255)

                               gcAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCCTCGCCGAGATCggcga                                                                                                                                               >  2:740168/1‑126 (MQ=255)

                                cAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGcc                                                                                                                      <  2:615146/150‑1 (MQ=255)

                                 aGCCGCTGCAATGGAGCCCTGGCCCGCTGGGCAGCGTGATGCGCGTGGTGGACAGACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCg                                                                                                                     <  1:127381/150‑1 (MQ=255)

                                        gCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGaa                                                                                                              <  1:5965/150‑1 (MQ=255)

                                          aaTTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGc                                                                                                            >  2:2314949/1‑150 (MQ=255)

                                          aaTTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGc                                                                                                            >  1:61174/1‑150 (MQ=255)

                                           aTTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGca                                                                                                           <  2:1411799/150‑1 (MQ=255)

                                              gAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACaa                                                                                                        <  2:1918608/150‑1 (MQ=255)

                                                gCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGc                                                                                                      <  2:369191/150‑1 (MQ=255)

                                                 cccTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGCCGGTCTCCAGGGCTTCGCCGAGATCGGCGCGGCGACAGCCCGCACGGGCAAAGCCGATTCGAAGCACAAGCt                                                                                                     >  1:2223271/1‑150 (MQ=255)

                                                 cccTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGGGCAGAAGCAGGTCAGTGCCGAAGCTCGAATGGTGAACATCTGCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAACGCCGATTCGAAGCACAAGCt                                                                                                     >  1:1151142/1‑150 (MQ=255)

                                                   gtGGCCCGATTGTCAGGGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCGGTGCCAAAGATGAAGCCGCTGTCTTCGCCACGATCGGCGTGGCGAGAGCCGGCACGGGCAATGCCGCTTCGAAACTCAAGCTGa                                                                                                   >  2:1737047/2‑150 (MQ=255)

                                                         cGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGTTgcaca                                                                                             >  2:963528/1‑149 (MQ=255)

                                                          gCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGaa                                                                                                              <  2:358228/132‑1 (MQ=255)

                                                          gCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGaa                                                                                                              >  1:358228/1‑132 (MQ=255)

                                                              ggCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAAGCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATgcaccgcacc                                                                                        <  1:751825/150‑1 (MQ=255)

                                                              ggCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGc                                                                                                      >  1:823356/1‑136 (MQ=255)

                                                              ggCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGc                                                                                                      <  2:823356/136‑1 (MQ=255)

                                                              ggCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATgcaccgcacc                                                                                        <  1:381297/150‑1 (MQ=255)

                                                                      gATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCt                                                                                <  1:1386596/150‑1 (MQ=255)

                                                                       aTTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTg                                                                               >  2:1433858/1‑150 (MQ=255)

                                                                       aTTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTg                                                                               >  1:1794773/1‑150 (MQ=255)

                                                                       aTTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTg                                                                               >  1:1838264/1‑150 (MQ=255)

                                                                        ttCGCGTGGTGGACATACCGCCCGACAGCCTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTgg                                                                              <  2:649779/150‑1 (MQ=255)

                                                                                gtggACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGTGACGACCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGc                                                                      >  1:42927/1‑150 (MQ=255)

                                                                                gtggACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGc                                                                      >  1:2245922/1‑150 (MQ=255)

                                                                                gtggACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGc                                                                      >  2:1350084/1‑150 (MQ=255)

                                                                                   gACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATc                                                                   <  2:293642/150‑1 (MQ=255)

                                                                                   gACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGAAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCGTGGACTACGGCATc                                                                   >  1:499089/1‑150 (MQ=255)

                                                                                      aTACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCt                                                                                <  1:2238846/134‑1 (MQ=255)

                                                                                      aTACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCt                                                                                >  2:2238846/1‑134 (MQ=255)

                                                                                        tccGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTAc                                                              >  2:1008230/2‑150 (MQ=255)

                                                                                          cGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCaaa                                                                                                                         <  1:186279/89‑1 (MQ=255)

                                                                                          cGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCaaa                                                                                                                         >  2:186279/1‑89 (MQ=255)

                                                                                          cGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCg                                                            >  1:1087365/1‑150 (MQ=255)

                                                                                          cGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTGCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGa                                                                             >  2:1900161/1‑133 (MQ=255)

                                                                                           gCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGATATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCt                                                                                >  2:823956/1‑129 (MQ=255)

                                                                                           gCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCt                                                                                <  1:823956/129‑1 (MQ=255)

                                                                                           gCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGa                                                           >  2:345410/1‑150 (MQ=255)

                                                                                            cccGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAg                                                          <  2:253663/150‑1 (MQ=255)

                                                                                             ccGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAgg                                                         <  1:479518/150‑1 (MQ=255)

                                                                                                aCAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCg                                                      >  1:1797089/1‑150 (MQ=255)

                                                                                                 cAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATAGGCGCGGCGAGAACCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGa                                                     <  2:1279108/150‑1 (MQ=255)

                                                                                                  aGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGGAACCCTGGACTCCGGGAGCGTTTCCGTGGGCGAg                                                    <  2:92089/150‑1 (MQ=255)

                                                                                                      tGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTct                                                >  2:1692941/1‑150 (MQ=255)

                                                                                                       gCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctg                                               <  1:757381/150‑1 (MQ=255)

                                                                                                        cAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctgg                                              <  2:2245922/150‑1 (MQ=255)

                                                                                                        aaGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTCATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctgg                                              <  1:963528/149‑1 (MQ=255)

                                                                                                           aaCCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctggctg                                           <  1:345410/150‑1 (MQ=255)

                                                                                                           aaCCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctggctg                                           <  1:1008230/150‑1 (MQ=255)

                                                                                                            aCCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctggctgg                                          <  1:521514/150‑1 (MQ=255)

                                                                                                              cAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctgg                                              >  1:104217/1‑144 (MQ=255)

                                                                                                              cAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctgg                                              <  2:104217/144‑1 (MQ=255)

                                                                                                              cAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTg                                        <  2:1622615/150‑1 (MQ=255)

                                                                                                               aGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCGCGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTgg                                       >  2:89803/1‑149 (MQ=255)

                                                                                                                ggTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCt                                      >  2:778961/1‑150 (MQ=255)

                                                                                                                   cAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGa                                   <  1:1596546/150‑1 (MQ=255)

                                                                                                                     gTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACg                                 >  1:222947/1‑150 (MQ=255)

                                                                                                                        ccGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATgcac                                                                                              >  1:513424/1‑86 (MQ=255)

                                                                                                                        ccGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATgcac                                                                                              <  2:513424/86‑1 (MQ=255)

                                                                                                                        ccGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATg                              <  2:222947/150‑1 (MQ=255)

                                                                                                                        ccGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATg                              <  1:1692941/150‑1 (MQ=255)

                                                                                                                          gAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGc                            >  2:211144/1‑150 (MQ=255)

                                                                                                                             gATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGaa                         <  1:211144/150‑1 (MQ=255)

                                                                                                                                   gCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCAc                   <  1:89374/150‑1 (MQ=255)

                                                                                                                                    ccGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCCGCACGCGCAGAGCGGACTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCAcc                  >  1:1622860/1‑150 (MQ=255)

                                                                                                                                     cGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCt                 >  2:2312919/1‑150 (MQ=255)

                                                                                                                                      actcgcctCGCCGATCTCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTc                >  1:7723/8‑150 (MQ=255)

                                                                                                                                       cTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctgg                                              <  1:415443/119‑1 (MQ=255)

                                                                                                                                       cTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTctgg                                              >  2:415443/1‑119 (MQ=255)

                                                                                                                                         gTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCaaa             >  1:2119085/1‑150 (MQ=255)

                                                                                                                                          tCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGa                                                           >  1:944433/1‑103 (MQ=255)

                                                                                                                                          tCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGa                                                           <  2:944433/103‑1 (MQ=255)

                                                                                                                                          gcctCGCCGATCTCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGa                                                     >  1:972247/4‑109 (MQ=255)

                                                                                                                                          gcctCGCCGATCTCGGCGAGGCGAGTGCCGGCACAGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAGCCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAAc            >  1:1996536/4‑150 (MQ=255)

                                                                                                                                            ttCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGa          >  1:2197693/1‑150 (MQ=255)

                                                                                                                                            ctCGCCGATCTCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGa                                                           >  2:906365/2‑101 (MQ=255)

                                                                                                                                            ctCGCCGATCTCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGa                                                           <  1:906365/100‑1 (MQ=255)

                                                                                                                                             tCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAg         <  1:1350084/150‑1 (MQ=255)

                                                                                                                                               gCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGc       <  1:2314949/150‑1 (MQ=255)

                                                                                                                                                ccGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCg      >  2:2366344/1‑150 (MQ=255)

                                                                                                                                                ccGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCg      >  2:2364627/1‑150 (MQ=255)

                                                                                                                                                 cGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATgg                             >  1:2214747/1‑126 (MQ=255)

                                                                                                                                                 cGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATgg                             <  2:2214747/126‑1 (MQ=255)

                                                                                                                                                  gagaTCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGCTTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGCCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGAc    >  1:1945898/1‑150 (MQ=255)

                                                                                                                                                    gaTCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACAt  >  1:976516/1‑150 (MQ=255)

CGACCCTGGACAACGGCGATGATCCGACAGCGCAGCCGCTGCAATTGAGCCCTGGCCCGCTGGGCAGCGTGATTCGCGTGGTGGACATACCGCCCGACAGCGTGCAGAACCAGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACAT  >  NC_002947/3637636‑3637933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`