| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 35,009 | A→G | 8.8% | intergenic (+27/+31) | czrSA → / ← PP_0031 | metal‑sensor histidine kinase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 35,009 | 0 | A | G | 8.8% | 252.7 / 11.0 | 91 | intergenic (+27/+31) | czrSA/PP_0031 | metal‑sensor histidine kinase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (42/41); new base G (4/4); total (46/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.73e-01 | |||||||||||
GTCGATCATGAGTCTGCACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTACTGAGCATTCACTTTCT > NC_002947/34862‑35158 | gTCGATCATGAGTCTGCACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAAt < 2:876018/150‑1 (MQ=255) gATCATGAGTCTGCACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGa > 2:1054282/1‑150 (MQ=255) gATCATGAGTCTGCACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGa > 1:1936203/1‑150 (MQ=255) cATGAGTCTGCACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACgg > 1:948330/1‑150 (MQ=255) tCTGCACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCttt > 2:1203267/1‑150 (MQ=255) cACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTtttgtt < 1:1005789/150‑1 (MQ=255) aCCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACgg > 2:1901051/1‑139 (MQ=255) aCCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACgg < 1:1901051/139‑1 (MQ=255) aCCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTtttgttt < 1:2141301/150‑1 (MQ=255) gaGGGATCGGCGAGCGAGGAGGGGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCACCAACTGCAGGCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAAGCCCGACAATAGACGGGCTATTTGTTTGc > 2:1338028/2‑150 (MQ=255) cAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGc < 2:170029/150‑1 (MQ=255) aGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCGATTGACGGGCCtaatcgt < 2:959619/146‑7 (MQ=255) aGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCGATTGACGGGCCtaatcgt > 1:959619/1‑140 (MQ=255) aGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGcc < 2:79410/150‑1 (MQ=255) ggCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGc > 1:994532/1‑150 (MQ=255) gAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATc > 2:482208/1‑150 (MQ=255) tGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGc < 1:1227861/150‑1 (MQ=255) gAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCTCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGc > 2:2154730/1‑140 (MQ=255) gAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCTCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGc < 1:2154730/140‑1 (MQ=255) gTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAg < 1:1420507/150‑1 (MQ=255) cGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGGCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACca > 1:1831147/1‑150 (MQ=255) aagaaAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGt > 2:326931/1‑136 (MQ=255) aagaaAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACcaca < 1:1203267/150‑1 (MQ=255) aagaaAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACcaca < 1:410761/150‑1 (MQ=255) aagaaAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGCGCCTTTTGTTTGCCTCAATGCATCAGt < 1:326931/136‑1 (MQ=255) gaaAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAgg < 2:1219072/150‑1 (MQ=255) gaaAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAgg > 1:1465346/1‑150 (MQ=255) gaaAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAgg > 1:1465368/1‑150 (MQ=255) aaaaCTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGAGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAggg > 2:457676/1‑150 (MQ=255) aaaCTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGt < 1:1618159/150‑1 (MQ=255) cTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCGATTGACGGGc < 1:2049180/104‑1 (MQ=255) cTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCGATTGACGGGc > 2:2049180/1‑104 (MQ=255) cTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGaa > 2:431700/1‑135 (MQ=255) cTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGaa < 1:431700/135‑1 (MQ=255) ttCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAAt > 2:1113650/1‑120 (MQ=255) ttCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAAt < 1:1113650/120‑1 (MQ=255) ttCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCAt < 1:1186614/150‑1 (MQ=255) ccTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGc < 2:1021577/150‑1 (MQ=255) cTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCg > 1:1209965/1‑150 (MQ=255) cACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAAt < 2:1916185/108‑1 (MQ=255) cACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAAt > 1:1916185/1‑108 (MQ=255) cACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAAAGACCGACGATAAAATTGCGCAGACGCGATTAAGCCCATCAATCTACGGTCCTTGTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAg > 2:883064/1‑150 (MQ=255) ccTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCaa > 2:1367168/1‑105 (MQ=255) ccTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCaa < 1:1367168/105‑1 (MQ=255) cTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAAt > 2:2306227/1‑150 (MQ=255) cACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCAc < 2:948330/150‑1 (MQ=255) ggAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACgg < 2:784116/75‑1 (MQ=255) ggAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACgg > 1:784116/1‑75 (MQ=255) ggAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCCCCGGGTCCATGGGCGACCGCAGAATCACCGACTtaa > 1:243668/1‑150 (MQ=255) aGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCttt > 2:1713073/1‑78 (MQ=255) aGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCttt < 1:1713073/78‑1 (MQ=255) ccAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAAtct > 2:1381251/1‑150 (MQ=255) cAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCAt < 1:959085/91‑1 (MQ=255) cAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCAt > 2:959085/1‑91 (MQ=255) cAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAAtctt < 2:1936203/150‑1 (MQ=255) cAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCATCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAAtctt > 2:1556800/1‑150 (MQ=255) cGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCa > 2:740428/1‑115 (MQ=255) cGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCa < 1:740428/115‑1 (MQ=255) gCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGAtt > 1:399853/1‑150 (MQ=255) cAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTg < 2:1465346/150‑1 (MQ=255) cAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTg < 2:1465368/150‑1 (MQ=255) cAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTg < 1:271202/150‑1 (MQ=255) aTGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGc < 2:1209965/150‑1 (MQ=255) ccgccgCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGttt > 1:91736/1‑150 (MQ=255) cgccgcTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCGTGAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGACAGGATTGGCGtttt > 2:857742/1‑150 (MQ=255) gccgcTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGttttt > 1:1094726/1‑150 (MQ=255) gcTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTGTTTCca > 1:714155/1‑150 (MQ=255) ttAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCcaca < 1:1054282/150‑1 (MQ=255) ttAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCcaca > 1:2287714/1‑150 (MQ=255) tgaaaTTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCcaca < 1:2306227/148‑1 (MQ=255) ttGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGgtgt > 2:2292801/1‑150 (MQ=255) cgcAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGTACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGCCAGGATTGGCGGTTTTCCACCGGTGTgag > 2:225152/1‑150 (MQ=255) cgcAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCCCAGGTGTgag < 2:91736/150‑1 (MQ=255) gcAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCcaca < 2:1568068/141‑1 (MQ=255) gcAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCcaca > 1:1568068/1‑141 (MQ=255) gcAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTgaga > 2:511021/1‑150 (MQ=255) cAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGaa < 1:261942/150‑1 (MQ=255) acacGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCAcc > 1:840453/1‑94 (MQ=255) acacGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCAcc < 2:840453/94‑1 (MQ=255) gATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTACTGa < 1:2275874/150‑1 (MQ=255) gATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTACTGa < 2:714155/150‑1 (MQ=255) aaaaGGCCCGTCGATTGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGAcc > 1:1437218/4‑78 (MQ=38) aaaaGGCCCGTCGATTGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGAcc < 2:1437218/75‑1 (MQ=38) tAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTACTGAGCa < 1:225152/150‑1 (MQ=255) ggCCCGTCGATTGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGc < 2:494656/117‑1 (MQ=255) ggCCCGTCGATTGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGc > 1:494656/1‑117 (MQ=255) gCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATgg > 1:210746/1‑67 (MQ=255) gCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATgg < 2:210746/67‑1 (MQ=255) gTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAAtctt < 2:1633478/94‑1 (MQ=255) gTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAAtctt > 1:1633478/1‑94 (MQ=255) gTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTACTGAGCATTCACtt > 1:423044/1‑150 (MQ=255) aaTCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTAc > 2:187815/1‑134 (MQ=255) aaTCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTAc < 1:187815/134‑1 (MQ=255) aaTCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTACTGAGCATTCACTTtct > 2:227458/1‑150 (MQ=255) | GTCGATCATGAGTCTGCACCAGGGATCGGCGAGCGTGGAGGTGACCGAAGAAAACTTCACCTGGTTCCACCTTCACTTTCCGGAAGCCCAGCAAATGCAGCCGGCAATGACCGCCGCTTAAATTGCGCAGACACGATTAGGCCCGTCAATCGACGGGCCTTTTGTTTGCCTCAATGCATCAGTGCCGAAGGACCACAGGGTCCATGGGCGACCGCAGAATCACCGACTTAATAATCTTCTGTTCGTCAGGATTGGCGTTTTTCCACAGGTGTGAGAAGTACTGAGCATTCACTTTCT > NC_002947/34862‑35158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |