| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,740,252 | C→A | 6.7% | L218M (CTG→ATG) ‡ | PP_3304 → | Bcr/CflA family multidrug resistance transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,740,252 | 0 | C | A | 6.7% | 288.6 / 7.1 | 89 | L218M (CTG→ATG) ‡ | PP_3304 | Bcr/CflA family multidrug resistance transporter |
| Reads supporting (aligned to +/- strand): ref base C (46/37); new base A (3/3); total (49/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01 | |||||||||||
GCAGTATGCTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCAGCTCGCTCCAGGTGG > NC_002947/3740106‑3740399 | gCAGTATGCTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGa > 2:1144654/1‑150 (MQ=255)gCAGTATGCTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTAAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGCTCCTGa > 1:2201444/1‑150 (MQ=255) aGTATGCTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATc < 2:1666880/150‑1 (MQ=255) tGCTGAACACAACTTTGGGGTGGCGCGCACTTTTCATAGCCGGCGGCATGTCGGCAATTCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCAGGATCGCag < 1:1197276/150‑2 (MQ=255) cTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATAc > 2:1813637/1‑150 (MQ=255) cTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCAGGATCGCag > 2:859993/1‑147 (MQ=255) cTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCAGGATCGCag < 1:859993/148‑2 (MQ=255) aaCACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGCCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGc > 1:1256769/1‑150 (MQ=255) accacTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCaaa > 1:2204816/1‑150 (MQ=255) ccacTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAAt < 2:1473936/150‑1 (MQ=255) cacTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAAtt < 1:814349/150‑1 (MQ=255) tttGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc < 1:1144654/150‑1 (MQ=255) tttGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc < 2:2390440/150‑1 (MQ=255) tttGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc < 1:2294719/150‑1 (MQ=255) ggCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAAcc < 2:1710235/150‑1 (MQ=255) cACTTTTCATAGCCGTCGGCATGTAGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCctct > 1:327144/1‑150 (MQ=255) ttttCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCctc > 1:781529/1‑146 (MQ=255) ttttCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCctc < 2:781529/146‑1 (MQ=255) ttttCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGACAAATTGGCTTGCAACCGCCTCTTCa > 2:1158734/1‑150 (MQ=255) ttCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATc < 2:128295/150‑1 (MQ=255) cATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCtt < 2:1766983/150‑1 (MQ=255) aTAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCttt > 2:1327093/1‑149 (MQ=255) aTAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTg > 1:1385196/1‑150 (MQ=255) aTAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCATCTTCATCTTg > 1:199056/1‑150 (MQ=255) gCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTcg > 1:317488/1‑150 (MQ=255) cATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc > 1:368073/1‑117 (MQ=255) cATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc < 2:368073/117‑1 (MQ=255) cATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTcgc < 2:1256769/150‑1 (MQ=255) aTGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCctc < 2:1806314/129‑1 (MQ=255) aTGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCctc > 1:1806314/1‑129 (MQ=255) aTGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTcgcg > 1:2226052/1‑150 (MQ=255) aTGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTCCCCGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTcccg > 2:329969/1‑150 (MQ=255) tCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATAGGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGAcc > 2:1611754/1‑150 (MQ=255) tCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc < 1:1541654/113‑1 (MQ=255) tCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc > 2:1541654/1‑113 (MQ=255) aaTCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCTACCAGCct < 2:2204816/150‑1 (MQ=255) aTCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCctg < 2:2171608/150‑1 (MQ=255) cTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCctgctg > 2:2101283/1‑150 (MQ=255) ttATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATAc < 2:2177772/92‑1 (MQ=255) ttATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATAc > 1:2177772/1‑92 (MQ=255) gcgcTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGc < 1:1649013/150‑1 (MQ=255) ttCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc < 2:976712/92‑1 (MQ=255) ttCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGc > 1:976712/1‑92 (MQ=255) ttCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTa < 1:2101283/150‑1 (MQ=255) aCCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCg > 2:2398971/1‑150 (MQ=255) ccTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGc < 2:2226052/150‑1 (MQ=255) ccTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGc > 2:819870/1‑150 (MQ=255) tCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCt > 1:1504591/1‑150 (MQ=255) tCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCt > 2:1368824/1‑150 (MQ=255) tCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGACAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGCGCGGCTTATTCGCCt > 2:2168463/1‑150 (MQ=255) agagGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATc > 1:1869387/1‑102 (MQ=255) agagGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATc < 2:1869387/102‑1 (MQ=255) agagGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCAGGATCGCag > 2:295884/1‑69 (MQ=255) agagGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCAGGATCGCag < 1:295884/70‑2 (MQ=255) gATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTcgc < 2:322764/150‑1 (MQ=255) gcatgTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTACAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTcgcc > 1:1290102/5‑150 (MQ=255) aGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTcgccgc > 2:372169/1‑150 (MQ=255) gTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCt < 2:931451/129‑1 (MQ=255) gTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCt > 1:931451/1‑129 (MQ=255) tGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCg < 2:1905677/125‑1 (MQ=255) tGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCg > 1:1905677/1‑125 (MQ=255) ccTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCctc < 1:2288560/79‑1 (MQ=255) ccTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCctc > 2:2288560/1‑79 (MQ=255) ccTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTcgcc < 2:898737/139‑1 (MQ=255) ccTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTc > 2:1176585/1‑150 (MQ=255) ccTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCATCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTcgcc > 1:898737/1‑139 (MQ=255) cTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCtgat > 2:186565/1‑113 (MQ=255) cTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCtgat < 1:186565/113‑1 (MQ=255) cTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCt > 2:719622/1‑150 (MQ=255) tGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCATGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCtt > 1:293228/1‑150 (MQ=255) cccATCGTAGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCCAATTGGCGTCCACCCGCCTCTTCATCTTGTCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCTTCGTTCGCCGCTGCGCCGTCAATCTTGa < 2:509573/150‑1 (MQ=255) cATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGAGTCCAACCGCCTCTTAATCTTGCCCGCACTCGCGACCAGCATGATGATAAAAGTTTTCGCGACCGCGGTCTCCGCGGCGCCGTCAATCTTGAta > 2:1833612/1‑149 (MQ=255) cgtcgGGTGACTCAATCAGTACCTGCGATCCTGATCGCGTCCTGCAAATTGGAGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGaa < 1:1833612/150‑1 (MQ=255) cgtcgGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGaa < 2:327144/150‑1 (MQ=255) cgtcgGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGaa < 1:2398971/150‑1 (MQ=255) gTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATg > 2:1704549/1‑150 (MQ=255) gTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATg > 1:76568/1‑150 (MQ=255) tGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATgg < 1:1611754/150‑1 (MQ=255) gACTCAATCATTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATggg > 2:1860181/1‑150 (MQ=255) tCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGc > 1:1843682/1‑65 (MQ=255) tCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGc < 2:1843682/65‑1 (MQ=255) tCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCATCAATCTTGATGGAAGGCATGGGGCt > 1:112550/1‑150 (MQ=255) aaTCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGGAGGCATGGGGCTCa > 1:981281/1‑150 (MQ=255) aaTCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCa > 1:1865420/1‑150 (MQ=255) tACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCAgctcgc > 2:2084361/1‑150 (MQ=255) tACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCAgctcgc < 1:819870/150‑1 (MQ=255) gtatGCGATCAGGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCAgctcgct > 2:1499824/4‑150 (MQ=255) ccTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCAgctcgctc < 2:1504591/150‑1 (MQ=255) tCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCAGCTCGCTCCAGGTgg < 1:2084361/150‑1 (MQ=255) | GCAGTATGCTGAACACCACTTTGGGGTGGCGCGCACTTTTCATAGCCGTCGGCATGTCGGCAATCCTTATCGCGCTGTTCTACCTCAGAGGGATAGGTGAAACCCTTCCTGCCCATCGTCGGGTGACTCAATCAGTACCTGCGATCCTGATCGCATACGGCAAATTGGCGTCCAACCGCCTCTTCATCTTGCCCGCACTCGCGACCAGCCTGCTGATGAGCGGCTTATTCGCCTCGTTCGCCGCTGCGCCGTCAATCTTGATGGAAGGCATGGGGCTCAGCTCGCTCCAGGTGG > NC_002947/3740106‑3740399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |