| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,788,444 | G→C | 5.4% | R78R (CGC→CGG) | PP_3350 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,788,444 | 0 | G | C | 5.4% | 320.5 / 4.3 | 102 | R78R (CGC→CGG) | PP_3350 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (45/51); new base C (2/4); total (47/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 103 total aligned reads displayed.
GCACGGGTATTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTC > NC_002947/3788295‑3788591 | gCACGGGTATTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAg > 1:2255060/1‑150 (MQ=255) cGGGTATTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCgg < 1:2377421/150‑1 (MQ=255) cGGGTATTCTCGACCTGGACGAAGGTACGCACCGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGACCTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTAAGTGTGAAGCATCTGCCTGG‑TAGctg < 2:1353716/150‑3 (MQ=255) ggTATTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGACAGCCAAAGTATGGTGTGTCCGAAGCATCGGCCCGG‑TAGCGGGc > 1:1737143/1‑150 (MQ=255) ggTATTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAAACGCCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGc < 2:874910/150‑1 (MQ=255) tATTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCt < 2:1853523/150‑1 (MQ=255) aTTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGC‑TACCGGGccga < 2:1164375/150‑3 (MQ=255) aTTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGC‑TACCGGGccga < 1:136939/150‑3 (MQ=255) aTTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGC‑TACCGGGccga < 1:99852/150‑3 (MQ=255) aTTCTCGACCTGGACGAAGCTACGCACGGCACCGCCGAACATGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGTTTTTTCCGAAGCATCGTCCCGG‑TAGCGGGCCTc < 2:2299992/150‑1 (MQ=255) ttCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCa < 1:939700/150‑1 (MQ=255) ttCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCa < 2:379755/150‑1 (MQ=255) tctcGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAg > 2:1518854/1‑150 (MQ=255) ctcGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGc > 2:1812888/1‑150 (MQ=255) ctcGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGATTGTAAGAACCATCGGCACGG‑AAGggggtgctagt > 2:1944613/1‑143 (MQ=255) tcGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGcc > 1:1433595/1‑150 (MQ=255) tcGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGcc > 2:2233701/1‑150 (MQ=255) ccTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGa < 1:229709/150‑1 (MQ=255) ccTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGa > 1:685172/1‑150 (MQ=255) tGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGt < 2:2186775/150‑1 (MQ=255) gACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTg > 1:1525418/1‑150 (MQ=255) gACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTg > 1:2157003/1‑150 (MQ=255) cGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCa < 1:2233701/150‑1 (MQ=255) gAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑TAGCCCGCGCAGGCCACACAACGAAGACCCCAAAGCATCGGCCCGG‑TAGCGGGTCTCAGCCCCGAGTTGCAg < 1:1855579/150‑1 (MQ=255) aGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCa < 1:1765330/147‑1 (MQ=255) aGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCa > 2:1765330/1‑147 (MQ=255) gTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAg > 1:2011965/1‑150 (MQ=255) aCGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGc < 1:2007735/150‑1 (MQ=255) gCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCa > 1:1973235/1‑141 (MQ=255) gCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCa < 2:1973235/141‑1 (MQ=255) aCGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGAc > 1:700627/1‑150 (MQ=255) aCGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGAc > 2:58361/1‑150 (MQ=255) gCATAGTCGACCAGGTTCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATACGAATCGTCGTT‑CAGCCCGCGCAGCAACCAGAAGGGTTTGTCCGAAGCATCGGCCAGG‑TAGCTGGCCTCAGCCCCGAGTTGCAGCCAGGCCGActct < 1:1976454/150‑1 (MQ=255) tcgtcgAAAGGGTGCAGGTGGGCAGGGGGCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCTCGCGCAGGCCAAAGAAGGGTTTGTCCGGGGCATCGGTCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGAc < 2:1079652/150‑1 (MQ=255) atcgAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAg > 2:1652321/2‑150 (MQ=255) gAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCAAAAGAAGGGTTTGCCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCg > 2:768601/1‑150 (MQ=255) aaCAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGccta < 2:500245/150‑3 (MQ=255) gTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAg < 1:1367560/117‑1 (MQ=255) gTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAg > 2:1367560/1‑117 (MQ=255) gTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATg < 1:2290816/147‑1 (MQ=255) gTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATg > 2:2290816/1‑147 (MQ=255) gTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTa < 1:480961/150‑1 (MQ=255) gTGCAGGTCGGCAGGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCGTCAGCCCCGAGTTGCGGCCAGACCGACGCTGGCAGccaagccta < 2:2089082/150‑8 (MQ=255) cAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAgcg < 2:1433595/150‑1 (MQ=255) gTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGCACTTCACATTGCCGGCGGC‑CTGGCCTAAGAAGGGTTTGTCCTAAGCATCGGCCCTG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAg < 1:1740855/150‑1 (MQ=255) tCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAgg < 2:1525418/150‑1 (MQ=255) ggCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGa < 1:396403/107‑1 (MQ=255) ggCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGa > 2:396403/1‑107 (MQ=255) aTGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATc < 1:1518854/150‑1 (MQ=255) aTGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATc < 1:1414526/150‑1 (MQ=255) ccTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAg < 2:293614/150‑1 (MQ=255) ccTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAg < 1:58361/150‑1 (MQ=255) tGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAggg > 1:1516890/1‑150 (MQ=255) aGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCa < 2:2157003/150‑1 (MQ=255) gCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAg > 2:2040579/1‑150 (MQ=255) ccGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACa > 1:1711858/1‑116 (MQ=255) ccGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACa < 2:1711858/116‑1 (MQ=255) cGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTg < 1:276571/150‑1 (MQ=255) ttGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCAT‑GGCTTGGTTAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATTGAAAGGGGCAGTGGc < 2:1280139/150‑1 (MQ=255) caccataTAGGAATCGTCGTT‑CACCCCGCGCAGCCCAAAGAATAGTTTGTCCGAAGCATCGGTCCGG‑TACCCGACCTAAAACCAAAGTTACAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCATGCCATCGAAAGGGGCAGTGTCCtt < 2:815005/144‑1 (MQ=255) tgcAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTg > 1:1354411/1‑150 (MQ=255) aTAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCggg < 1:2070535/150‑1 (MQ=255) tAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGc > 1:2194685/1‑92 (MQ=255) tAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGc < 2:2194685/92‑1 (MQ=255) gAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGgtcg > 1:554651/1‑150 (MQ=255) gAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGgtcg > 1:451027/1‑150 (MQ=255) aTCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGgtcgtc < 1:1812888/150‑1 (MQ=255) aTCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGgtcgtc < 1:948398/150‑1 (MQ=255) tcgtcgTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGtcgtcg > 2:385735/1‑150 (MQ=255) cgtcgtT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCga < 1:1652321/150‑1 (MQ=255) gtcgtT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCgag > 2:1031885/1‑150 (MQ=255) cgcAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTcc < 2:1393268/150‑1 (MQ=255) gCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGAt > 2:1087459/1‑150 (MQ=255) cAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATcc > 2:1961825/1‑150 (MQ=255) cAAAGAAGGGTTTGTCAGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATcc > 1:1191728/1‑150 (MQ=255) aaaGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCa > 1:1421112/1‑150 (MQ=255) aagaagGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTa > 2:1101412/1‑83 (MQ=255) aagaagGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTa < 1:1101412/83‑1 (MQ=255) agaagGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGc > 1:1040567/1‑150 (MQ=255) agaagGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTAGATCCAGc > 2:502450/1‑150 (MQ=255) gaagGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCg > 1:881787/1‑150 (MQ=255) aagGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGa < 1:1031885/150‑1 (MQ=255) aagGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGa > 1:906389/1‑150 (MQ=255) ccGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTg < 2:1354411/150‑1 (MQ=255) gAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGc > 1:1987378/1‑150 (MQ=255) aaGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTg > 2:1167937/1‑92 (MQ=255) aaGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTg < 1:1167937/92‑1 (MQ=255) aaGCATCGGCCCCG‑TACCGGGCCTCAGCCCCGAGTTGCAGCCCAGCCGCAGCTGTTATCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCTTCGAGGGGCCCCtttcc > 2:338715/1‑146 (MQ=255) gCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTc < 2:2255060/150‑1 (MQ=255) cATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGc < 2:2303174/56‑1 (MQ=255) cATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGc > 1:2303174/1‑56 (MQ=255) cATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTcc < 1:768601/150‑1 (MQ=255) aTCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACa < 1:2095740/53‑1 (MQ=255) aTCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACa > 2:2095740/1‑53 (MQ=255) aTCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAAGCCATCGAAAGGGGCAGTGGGCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTccc > 1:2206394/1‑150 (MQ=255) ggCCCGC‑TACCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCccgg > 1:1543783/1‑150 (MQ=255) cGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCccggccgg > 2:1793141/1‑150 (MQ=255) g‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCgaga < 1:763421/100‑1 (MQ=255) g‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCgaga > 2:763421/1‑100 (MQ=255) tAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGctc < 2:1737143/150‑1 (MQ=255) | GCACGGGTATTCTCGACCTGGACGAAGGTACGCACGGCATCGTCGAACAGGTGCAGGTCGGCATGGGCCTGCAGCCGTTGCTGCAGATAGGAATCGTCGTT‑CAGCCCGCGCAGGCCAAAGAAGGGTTTGTCCGAAGCATCGGCCCGG‑TAGCGGGCCTCAGCCCCGAGTTGCAGCCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTC > NC_002947/3788295‑3788591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |