Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,863,884 | A→G | 9.4% | P921P (CCA→CCG) ‡ | PP_3413 → | two‑component system sensor histidine kinase/response regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,863,884 | 0 | A | G | 9.4% | 293.8 / 16.3 | 106 | P921P (CCA→CCG) ‡ | PP_3413 | two‑component system sensor histidine kinase/response regulator |
Reads supporting (aligned to +/- strand): ref base A (51/45); new base G (7/3); total (58/48) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.43e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 |
Only 100 of 114 total aligned reads displayed.
TGACACTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTC > NC_002947/3863736‑3864033 | tgACACTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCcag > 2:1212090/1‑150 (MQ=255) acTGGCGGAGAATGGCGAGATCGCCCTTGCACGGTGGCAGGCAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCcagctcg > 1:197461/1‑147 (MQ=255) tGGCGGAGACTGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGAGTTGGTGATCACCGATTGCAGCATGCCGGTCATTGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGcc > 1:1185021/1‑150 (MQ=255) gCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGt > 1:1128029/1‑150 (MQ=255) agaATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCTGGCAGGCCgcgctc < 2:1436130/150‑6 (MQ=255) gaATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCt > 1:1085352/1‑150 (MQ=255) gagaTCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGc > 2:584414/1‑147 (MQ=255) gagaTCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGc < 1:584414/147‑1 (MQ=255) cccTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCACG‑GCCTGCTGGCAGGCCgcgc < 1:1824695/133‑4 (MQ=255) cccTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCACG‑GCCTGCTGGCAGGCCgcgc > 2:1824695/1‑130 (MQ=255) ccTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCaa > 2:160060/1‑150 (MQ=255) ccTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCaa > 2:1278590/1‑150 (MQ=255) ttGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGCTTGCAGCATGCCGGTCATGGACGGGCATGAACTCCCCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATg < 2:2047643/150‑1 (MQ=255) ttGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGTAGGCTGTATTCTTGGCGTGACCGCCAATg < 1:571158/150‑1 (MQ=255) aCGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGa < 1:1517229/137‑1 (MQ=255) aCGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGa > 2:1517229/1‑137 (MQ=255) gCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAgg > 1:124794/1‑150 (MQ=255) tGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGAGTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCACTTGCAAGGCCCCTGTAGGAGCG‑G‑GCTTGCCAGCAGGCCGTATTCTTGGCATGACCGCCACTGCCTAGGct > 1:1488251/1‑149 (MQ=255) gCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCga < 2:124794/150‑1 (MQ=255) cAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgag < 1:160060/150‑1 (MQ=255) cAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgag < 1:1934821/150‑1 (MQ=255) cAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCgag < 1:1644473/150‑1 (MQ=255) aGGAAGCGCGCTTCGACCTTGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGTCAAGCGCG‑GCATGCCAGCAGGCCGCATTCTTGGCGTGACCGCCAATGCCCAGGCCgagg < 1:54439/150‑1 (MQ=255) aaGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGc > 2:2276597/1‑150 (MQ=255) gcgcgcTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGTGTGACCGCCAATGCCCAGGCCGAGGAGCGt > 2:183780/1‑150 (MQ=255) gcTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCCCCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTc < 1:107837/150‑1 (MQ=255) gcTTCGACCTGGTGATCACCGATTGAGTCCAGTCGGTCATGGACGGGCATGAACTCACCCGGCGCATTGGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTc > 1:1269101/1‑150 (MQ=255) atcttgTGAGCAGCGTTTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGcc > 2:1610335/6‑150 (MQ=255) ccTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCt < 1:1255364/150‑1 (MQ=255) cTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTg > 2:1880855/1‑150 (MQ=255) tGGTGATCACCGATTGCAGCATGCCGGTCCTGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTgg > 2:1849489/1‑150 (MQ=255) tGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGc > 1:91640/1‑107 (MQ=255) tGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGc < 2:91640/107‑1 (MQ=255) tGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTgg > 2:848794/1‑150 (MQ=255) tGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTgg > 1:757302/1‑150 (MQ=255) ggTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGc < 2:1572697/150‑1 (MQ=255) gATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAg > 1:1201724/1‑150 (MQ=255) aTCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGc < 2:1128029/150‑1 (MQ=255) tCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCg > 1:673834/1‑150 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTAtt < 1:450242/93‑1 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTAtt > 2:450242/1‑93 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATg < 1:1133161/112‑1 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATg > 2:1133161/1‑112 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGc > 1:2159359/1‑150 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCACG‑GCCTGCTGGCAGGCCgcgc < 1:524885/92‑4 (MQ=255) aCCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCACG‑GCCTGCTGGCAGGCCgcgc > 2:524885/1‑89 (MQ=255) ccGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCa > 1:377520/1‑150 (MQ=255) cGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCAt > 2:792016/1‑150 (MQ=255) aTTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATgg < 1:1212090/150‑1 (MQ=255) aTTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATgg < 1:1610335/150‑1 (MQ=255) cagcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGT‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGa < 1:105278/150‑1 (MQ=255) agcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTg < 1:324739/88‑1 (MQ=255) agcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTg > 2:324739/1‑88 (MQ=255) gcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCg > 1:1881087/1‑138 (MQ=255) gcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAAt < 1:848794/150‑1 (MQ=255) gcaTGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGACGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCg < 2:1881087/138‑1 (MQ=255) gCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGc < 2:1201859/113‑1 (MQ=255) ggTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGCGCTC‑ATCTTGTCCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGtt < 2:1269101/150‑1 (MQ=255) cATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCaa < 2:2159359/150‑1 (MQ=255) aTGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAg > 1:207918/1‑150 (MQ=255) tGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGc > 2:1212443/1‑150 (MQ=255) ggACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCGGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGcc > 2:474680/1‑150 (MQ=255) ggggCATGAACTCACCCGGGGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCTTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGAt < 2:566499/149‑1 (MQ=255) cGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGAt < 1:1634414/150‑1 (MQ=255) gggCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGAtt > 2:437382/1‑150 (MQ=255) gCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTgg > 1:1159254/1‑150 (MQ=255) tGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCt > 2:5683/1‑150 (MQ=255) cTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAAt > 1:219543/1‑124 (MQ=255) cTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACGCGCTGCCTGGCCAGCGGCATGGACGAAt < 2:219543/124‑1 (MQ=255) aCCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTg < 2:1717374/58‑1 (MQ=255) ccGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGACGTCTTATAGGCGTGAGCACCAATGGCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCt > 2:33808/1‑150 (MQ=255) gcATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGa < 2:1085352/150‑1 (MQ=255) gcATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGa > 2:451962/1‑150 (MQ=255) aTTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGAcc > 2:1973829/1‑150 (MQ=255) tCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCa < 2:1159254/150‑1 (MQ=255) aGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTgc < 1:2209657/130‑1 (MQ=255) aGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTgc > 2:2209657/1‑130 (MQ=255) gAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAg < 1:1278590/150‑1 (MQ=255) gggCGACCGCG‑GCCGGCCAGTTGTCCGTATTCTTGGCGTGACCGCCAATGCCCAGTCCGAGTAGCGTACTCGCTGCTTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGCCCCACCTGCCCCAGGt < 2:45020/150‑1 (MQ=255) ggCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTg > 2:1698089/1‑150 (MQ=255) gCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGcccc < 1:2035919/144‑1 (MQ=255) gCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGcccc > 2:2035919/1‑144 (MQ=255) agaatacg‑GCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTgcg > 1:2001556/7‑150 (MQ=255) aGCGCG‑GCCGTCCAACAGGCTGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATCGACGTATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGcc < 2:1185021/150‑1 (MQ=255) gcgcG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGccc < 2:2400515/150‑1 (MQ=255) gcgcG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGccc > 1:2400515/1‑150 (MQ=255) atacg‑GCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGccc > 1:2032258/4‑150 (MQ=255) tacg‑GCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCt > 1:732948/3‑150 (MQ=255) tacg‑GCCTGCTGGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCt > 1:1806815/3‑150 (MQ=255) cgcg‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCt > 2:1566767/1‑150 (MQ=255) gcg‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGa > 1:1670112/1‑126 (MQ=255) gcg‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGa < 2:1670112/126‑1 (MQ=255) cg‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTca < 1:1698089/150‑1 (MQ=255) cTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTcagcag > 1:59548/1‑150 (MQ=255) tGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGc < 1:5077/86‑1 (MQ=255) tGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCAc < 1:1208525/125‑1 (MQ=255) ccAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGTTCGGATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCg > 1:2098795/1‑150 (MQ=255) ccAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCg > 2:182181/1‑150 (MQ=255) cagcagGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGt < 1:1880855/150‑1 (MQ=255) agcagGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTc > 1:2358178/1‑150 (MQ=255) | TGACACTGGCGGAGAATGGCGAGATCGCCCTTGCACGCTGGCAGGAAGCGCGCTTCGACCTGGTGATCACCGATTGCAGCATGCCGGTCATGGACGGGCATGAACTCACCCGGCGCATTCGC‑AGCCTGGAGGGCGAGCGCG‑GCCTGCCAGCAGGCCGTATTCTTGGCGTGACCGCCAATGCCCAGGCCGAGGAGCGTACTCGCTGCCTGGCCAGCGGCATGGACGAATGCCTGTTCAAGCCGATTGGTCTGCGCACGCTCAAGACCCACCTGCCCCAGGTGCGCCCTCAGCAGCCGTC > NC_002947/3863736‑3864033 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |