| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,869,902 | T→G | 5.2% | E354A (GAG→GCG) ‡ | PP_3419 ← | sigma‑54 dependent transcriptional regulator/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,869,902 | 0 | T | G | 5.2% | 345.4 / 5.7 | 114 | E354A (GAG→GCG) ‡ | PP_3419 | sigma‑54 dependent transcriptional regulator/response regulator |
| Reads supporting (aligned to +/- strand): ref base T (57/49); new base G (3/3); total (60/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 122 total aligned reads displayed.
CAACGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGCC > NC_002947/3869754‑3870049 | cAACGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTtcggcctc > 2:1455867/1‑150 (MQ=255) aCGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATCACCCGGCCAGCTATAACCGAGCAGCAGGC‑TTtcggcctccg > 2:1769515/1‑148 (MQ=255) tCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGaa > 2:697462/1‑150 (MQ=255) tCGTCAACCAAGGTCATGCACAGGTTCAACTGAGGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCCCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGaa > 1:1398880/1‑150 (MQ=255) gTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGaaaa > 2:1371815/1‑150 (MQ=255) tCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAg > 2:590658/1‑150 (MQ=255) aaCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTTCGGCCGAGGCCGaaagcc < 1:1664578/150‑4 (MQ=255) aCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAgcgc < 1:1371815/150‑1 (MQ=255) aCCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCGAGGCCGaaa > 1:1372554/1‑145 (MQ=255) aTGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGc > 2:610/1‑150 (MQ=255) gCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCtt > 1:1917758/1‑150 (MQ=255) acaGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGc < 1:2040833/150‑1 (MQ=255) aGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCa > 1:267260/1‑150 (MQ=255) gTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGCGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATa < 2:2202738/150‑1 (MQ=255) gTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATa < 2:1929220/150‑1 (MQ=255) aaCTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgcgc > 2:2206399/1‑150 (MQ=255) aaCTGATGCGCTTGCACCACCTCGTTCGGAGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAgcgc < 2:534292/150‑1 (MQ=255) aTGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCt > 2:862031/1‑150 (MQ=255) cgcTTGCACCAACTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtg < 2:656056/150‑1 (MQ=255) ttGCGCCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggtg > 1:1805625/1‑150 (MQ=255) ttGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAt > 2:1240446/1‑146 (MQ=255) ttGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAt < 1:1240446/146‑1 (MQ=255) tGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTAtggtgg < 1:559173/150‑1 (MQ=255) caccTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAg > 1:73297/1‑150 (MQ=255) accTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAgg < 1:505931/150‑1 (MQ=255) cTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGaa < 2:1805625/150‑1 (MQ=255) ttCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGc < 1:924001/150‑1 (MQ=255) ggCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCTCGCACATTGCCAGGCCAGCTATAACCGAGCAGCATGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTAGATATAGCGCCGGCTATGGTGGGCAAGGAAATGCcgc < 1:1769515/150‑1 (MQ=255) cAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAg > 2:2091994/1‑150 (MQ=255) cAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGa > 1:5353/1‑134 (MQ=255) cAACACCGTCTGCTCCAGCATGTTGAGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCACGC‑TTTCCGCCCCGGCTGCAAAGCGCAGGGTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAg < 2:580937/150‑1 (MQ=255) aaCACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCTGTatt > 1:2177641/1‑148 (MQ=255) accccctCTGCTCCAGCATGTGGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCa < 2:2316073/144‑1 (MQ=255) cacCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAg > 1:2316073/1‑150 (MQ=255) cGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAg < 1:970027/126‑1 (MQ=255) cGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGAt < 1:697462/150‑1 (MQ=255) gTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGGATTGGCGCGCCAGTAGCAGGATg > 2:561576/1‑150 (MQ=255) cTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTg < 1:2322751/150‑1 (MQ=255) tCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTTCGGCCTCGGCCGaaaa < 1:1422583/78‑1 (MQ=255) tCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGCTTTTCGGCCTCGGCCGaaaa > 2:1422583/1‑78 (MQ=255) tCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGc > 2:1007273/1‑150 (MQ=255) ccAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGcc > 2:1265571/1‑150 (MQ=255) cAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATa > 1:1543621/1‑96 (MQ=255) cAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATa < 2:1543621/96‑1 (MQ=255) cAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGccc > 1:266815/1‑150 (MQ=255) cATGTTGCGAAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCAcg > 1:2384100/1‑150 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAg < 2:1317322/110‑1 (MQ=255) ttGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAg > 1:1317322/1‑110 (MQ=255) gcgcAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATa > 1:1899408/1‑150 (MQ=255) gcgcAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATa > 1:1477893/1‑150 (MQ=255) gcAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTtcggcctc > 1:1261881/1‑55 (MQ=255) gcAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACa > 1:755992/1‑150 (MQ=255) cAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAg < 2:755992/150‑1 (MQ=255) cACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGcgcg < 2:184332/150‑1 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCgg > 2:1084964/1‑150 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCgg > 2:1364208/1‑150 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCgg > 1:895240/1‑150 (MQ=255) aCGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCgg > 1:1042995/1‑150 (MQ=255) gCACATTGCCAGGTCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCa > 1:87937/1‑150 (MQ=255) gCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCa > 1:1698313/1‑111 (MQ=255) gCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCa < 2:1698313/111‑1 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCt < 2:1162458/124‑1 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCt > 1:1162458/1‑124 (MQ=255) acaTTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCAcc > 1:252039/1‑150 (MQ=255) ttGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCTAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTc < 2:1917758/150‑1 (MQ=255) ttGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTc < 2:2384100/150‑1 (MQ=255) agccaggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCa > 2:1650964/2‑150 (MQ=255) gccaggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAg < 2:895240/150‑1 (MQ=255) ccaaaccaaCTATAACCGAGCAGCATGC‑ATTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAgg > 2:532140/6‑150 (MQ=255) caggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAggg < 1:862031/150‑1 (MQ=255) caggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAggg > 1:526945/1‑150 (MQ=255) aggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCAc < 1:2057760/141‑1 (MQ=255) aggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCAc > 2:2057760/1‑141 (MQ=255) aggccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGc < 2:73297/150‑1 (MQ=255) gccagCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGa < 2:1042995/150‑1 (MQ=255) gCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCGAGGAAATGCCCCGCCAGTAGCAGGATGCCCTGCCTACTTGATGACAGTCGCGGCACCTTCAGGGCGATAAt < 2:2081868/150‑1 (MQ=255) gCTATAACCGAGCAGCAGGC‑GTACGCCGCCTGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAAt < 1:610/150‑1 (MQ=255) tataACCTAGAAGCAGGC‑GTTCGGCCTCGGCCGAAAAGCGCAGATTCGGCTCGGCATAGCGCCGGTTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGc < 2:799325/150‑1 (MQ=255) tataACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGc > 2:306874/1‑150 (MQ=255) tataACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCACAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGc < 2:1398880/150‑1 (MQ=255) taACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGa > 1:860111/1‑150 (MQ=255) cGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGc > 2:2358146/1‑125 (MQ=255) cGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGc < 1:2358146/125‑1 (MQ=255) cGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGc < 2:252039/150‑1 (MQ=255) cagcagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaa < 2:2388228/150‑1 (MQ=255) cagcagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaa < 2:451544/150‑1 (MQ=255) cagcagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaa < 1:730947/150‑1 (MQ=255) cagcagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaa < 1:1455867/150‑1 (MQ=255) tgcgcttttCGGCCGAGGCCG‑AAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaagaa > 2:133454/7‑150 (MQ=255) cagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaagaa > 2:1966338/1‑150 (MQ=255) cagGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGgaagaa > 1:1328670/1‑150 (MQ=255) ggC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATg < 2:896103/70‑1 (MQ=255) ggC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACa < 1:318499/150‑1 (MQ=255) gC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAg > 2:1919224/1‑150 (MQ=255) ttttCGGCCGAGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAgg < 1:1138914/107‑1 (MQ=255) ttttCGGCCGAGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAgg > 2:1138914/2‑108 (MQ=255) tttCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGt < 1:2011463/150‑1 (MQ=255) ttCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATa > 1:914362/1‑102 (MQ=255) ttCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATa < 2:914362/102‑1 (MQ=255) gcctcggccGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGc > 1:880382/1‑150 (MQ=255) | CAACGGCTCGTCAACCAAGGTCATGCACAGGTTCAACTGATGCGCTTGCACCACCTCGTTCGGCGCCAGCAACACCGTCTGCTCCAGCATGTTGCGCAATTCACGCACATTGCCAGGCCAGCTATAACCGAGCAGCAGGC‑TTTCGGCCTCGGCCGAAAAGCGCAGGTTCGGCTTGCCATAGCGCCGGCTATGGTGGGCAAGGAAATGCCGCGCCAGTAGCAGGATGTCCTGCCCACGCGAATACAGGCGCGGCACCTTCAGGGCGATAATGCGAAGGCGGAAGAACAGGTCACGCC > NC_002947/3869754‑3870049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |