Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,883,615 C→G 5.1% A197G (GCC→GGC) ‡ PP_3428 → TPR repeat‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,883,6150CG 5.1% 386.6 / 9.3 118A197G (GCC→GGC) ‡PP_3428TPR repeat‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (53/59);  new base G (3/3);  total (56/62)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.70e-01

Only 100 of 122 total aligned reads displayed.

CGACGCCATCGGCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCA  >  NC_002947/3883466‑3883762
                                                                                                                                                      |                                                                                                                                                   
      cATCGGCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCa                                                                                                                                               >  1:2973/1‑150 (MQ=255)
         cGGCCTTTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGGGCTGCagcg                                                                                                                                            <  2:1112818/150‑1 (MQ=255)
          ggCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCCCGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:2121790/150‑1 (MQ=255)
          ggCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:669814/150‑1 (MQ=255)
          ggCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:1506495/150‑1 (MQ=255)
          ggCCTCTATTTCGGCCCCCGGCAGTCAGCCCTGGAGCAATACCAGACAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGTCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:2242802/150‑1 (MQ=255)
             ctctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGcc                                                                                                                                                    >  2:2400169/1‑138 (MQ=255)
             ctctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGcc                                                                                                                                                    <  1:2400169/138‑1 (MQ=255)
             ctctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcgagcg                                                                                                                                        >  2:1259132/1‑150 (MQ=255)
              tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGCGCGACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  1:1980046/1‑150 (MQ=255)
              tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  1:1591247/1‑150 (MQ=255)
              tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  2:401741/1‑150 (MQ=255)
              tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  2:4803/1‑150 (MQ=255)
                  tctCGGCCCTCTGCAGTCAGCCCGGGAGAAATACCAGCAAGCCCTGGAGCATTAGTTACAGGAGGCCGACGCCCAAGCGCACCTCGCGCGCCTGTACCTGCACGAAAACGCCTACACGCACGC‑CGCTGCAGCACTGCAGCGAGCGCTcgc                                                                                                                                   <  2:933369/148‑1 (MQ=255)
                      ggCCCCCTGCAGTCCGCCCTGGCCCTGTATCGGGAAGGCCTGGAGCAACAGCCTGAAGATGCGTGTTGTGGTGGGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGtt                                                                                                                               <  1:655974/150‑1 (MQ=255)
                        cccccTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGc                                                                                                                             >  2:729271/1‑150 (MQ=255)
                           ccTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGcccc                                                                                                                          >  1:1322655/1‑150 (MQ=255)
                             tGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCg                                                                                                                        <  1:401741/150‑1 (MQ=255)
                             tGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCg                                                                                                                        <  1:1228928/150‑1 (MQ=255)
                              gCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCgg                                                                                                                       <  1:401543/150‑1 (MQ=255)
                                 gTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCaa                                                                                                                    <  2:1591247/150‑1 (MQ=255)
                                  tCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGAGGTTGCCCCCGGCAAc                                                                                                                   >  2:1066446/1‑150 (MQ=255)
                                        cgggAGCAATACCAGCAACCTGTGGAGCGACACCCTGAAGATGCCGACGCCCAAGTACAACTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCACTGCAGCGAGCGCTCGCGGTTGCACCCGGCAACCTCCAt                                                                                                             <  2:350629/148‑1 (MQ=255)
                                        cTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             <  1:1965654/150‑1 (MQ=255)
                                         tGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATG                                                                                                            >  2:232186‑M1/1‑150 (MQ=255)
                                         tGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGAGGTTGCCCCCGGCAACCTCGagc                                                                                                            <  1:1066446/150‑3 (MQ=255)
                                             gCAATACCAGCAAGCCGTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACCCGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCT                                                                                                        <  2:423929‑M1/150‑1 (MQ=255)
                                             gCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCTCGCTGCAGGGCTGCagcgg                                                                                                                                           >  1:114883/1‑115 (MQ=255)
                                                 tACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG                                                                                                    >  1:470774‑M1/1‑150 (MQ=255)
                                                 tACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG                                                                                                    >  1:1857765‑M1/1‑150 (MQ=255)
                                                 tACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACCC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG                                                                                                    >  1:897352‑M1/1‑150 (MQ=255)
                                                   ccAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGAc                                                                                                  >  2:1875706/1‑150 (MQ=255)
                                                    cAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACt                                                                                                 >  1:606812/1‑150 (MQ=255)
                                                     aGCACGCCCTGGGGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTc                                                                                                <  2:1980046/150‑1 (MQ=255)
                                                        aaGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             <  2:650077/134‑1 (MQ=255)
                                                           cccTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTAc                                                                                          <  2:1304176/150‑1 (MQ=255)
                                                           cccTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGGGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTAc                                                                                          <  1:133850/150‑1 (MQ=255)
                                                             cTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             <  2:662865/129‑1 (MQ=255)
                                                             cTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             >  1:662865/1‑129 (MQ=255)
                                                                gAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCTGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTg                                                                                     <  2:523769/150‑1 (MQ=255)
                                                                   cAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTc                                                                                  <  1:1609242/150‑1 (MQ=255)
                                                                   cAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTc                                                                                  <  2:1251208/150‑1 (MQ=255)
                                                                       aGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGc                                                                              >  2:897352‑M2/1‑149 (MQ=255)
                                                                         ccTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCa                                                                                                                                               >  1:858467/1‑83 (MQ=255)
                                                                         ccTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCa                                                                                                                                               <  2:858467/83‑1 (MQ=255)
                                                                         ccTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgc                                                                            <  2:1512487‑M2/150‑4 (MQ=255)
                                                                           tGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCC‑GGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgccag                                                                         >  2:2285660‑M2/1‑144 (MQ=255)
                                                                             aaGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAGCCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgccagg                                                                        >  2:941910‑M2/1‑143 (MQ=255)
                                                                                aTGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGcc                                                                     >  2:2261054/1‑150 (MQ=255)
                                                                                    cGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGccacca                                                                 <  2:166737/150‑1 (MQ=255)
                                                                                          ccAAGTGCACCTGGCGCGCCTTTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGc                                                           >  1:619617/1‑150 (MQ=255)
                                                                                          ccAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGGGCTGCagcggc                                                                                                                                          >  1:2069021/1‑69 (MQ=39)
                                                                                          ccAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGGGCTGCagcggc                                                                                                                                          <  2:2069021/71‑3 (MQ=39)
                                                                                          ccAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGc                                                           >  1:1025419/1‑150 (MQ=255)
                                                                                           cAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCacgac                                                             >  2:429379/1‑147 (MQ=255)
                                                                                           cAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCacgac                                                             <  1:429379/147‑1 (MQ=255)
                                                                                            aaGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCTCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGc                                                                              >  2:465394‑M2/1‑128 (MQ=255)
                                                                                            aaGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCTCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGc                                                                              <  1:465394‑M2/129‑2 (MQ=255)
                                                                                             aGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTc                                                        <  2:1025419/150‑1 (MQ=255)
                                                                                               tGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTccc                                                      <  1:801869/150‑1 (MQ=255)
                                                                                                  aCCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCaa                                                                                                                    >  2:2204376/1‑85 (MQ=255)
                                                                                                  aCCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCaa                                                                                                                    <  1:2204376/85‑1 (MQ=255)
                                                                                                    cTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgc                                                                            >  2:672450‑M2/1‑120 (MQ=255)
                                                                                                    cTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgc                                                                            <  1:672450‑M2/123‑4 (MQ=255)
                                                                                                     tGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGTTGTAGCACAGCAGGGAGCGCTCGCGGTTTCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAgg                                                >  1:1623946/1‑150 (MQ=255)
                                                                                                      ggCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCg                                                     >  1:2285790/1‑144 (MQ=255)
                                                                                                         gcgcCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAGGCCCTGGCGctcgagcaggcgtacctgagtcgccagg                                                                        >  2:737465‑M1/1‑94 (MQ=255)
                                                                                                          cgcCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTg                                           <  2:1673649/150‑1 (MQ=255)
                                                                                                           gcCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTgg                                          <  2:1857765/150‑1 (MQ=255)
                                                                                                                 aCCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAg                                    <  1:4803/150‑1 (MQ=255)
                                                                                                                  ccTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGc                                   >  2:306469/1‑150 (MQ=255)
                                                                                                                    tGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGccc                                                                                                                           >  2:1228996/1‑60 (MQ=255)
                                                                                                                    tGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGccc                                 >  2:1394977/1‑150 (MQ=255)
                                                                                                                    tGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGccc                                 >  2:342739/1‑150 (MQ=255)
                                                                                                                     gCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCTCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCt                                <  1:972564/150‑1 (MQ=255)
                                                                                                                      cACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGctcgagcaggcgtacctgagtcgccag                                                                         >  2:2009664‑M1/1‑81 (MQ=255)
                                                                                                                      cACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGctcgagcaggcgtacctgagtcgccag                                                                         <  1:2009664‑M1/108‑28 (MQ=255)
                                                                                                                      cACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTg                               <  1:729271/150‑1 (MQ=255)
                                                                                                                          aaaaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGa                                                                                >  2:116105/1‑97 (MQ=255)
                                                                                                                          aaaaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGa                                                                                <  1:116105/97‑1 (MQ=255)
                                                                                                                          aaaaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGgcgc                           >  1:1581898/1‑150 (MQ=255)
                                                                                                                            aaCGACTACACGCACGC‑CGCTGCAGCTTTACAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTg                         >  1:2245132/1‑150 (MQ=255)
                                                                                                                            aaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGctcgagcaggcgtacctgagtcgcca                                                                          <  1:1392537‑M1/101‑27 (MQ=255)
                                                                                                                            aaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGAATAGCACACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTg                         >  1:1956318/1‑150 (MQ=255)
                                                                                                                             aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGATCGCTCGCGTTTGCCCCCGGCACCCTCGATGCCCTGGCGACTGCGGTACGCCTGCTCGCACGATCTGGGCTGGTCGGTTGCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        <  1:2223713/150‑1 (MQ=255)
                                                                                                                             aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAGCCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        <  2:2245132/150‑1 (MQ=255)
                                                                                                                             aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        <  1:592933/150‑1 (MQ=255)
                                                                                                                             aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        >  1:1258667/1‑150 (MQ=255)
                                                                                                                                    cacgcacgC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGa                 >  2:2015375/1‑150 (MQ=255)
                                                                                                                                       gcacgc‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTc              >  1:969427/1‑150 (MQ=255)
                                                                                                                                         acgc‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCgg            <  2:2973/150‑1 (MQ=255)
                                                                                                                                           gc‑cgcTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTgg                                          >  1:742264/1‑118 (MQ=255)
                                                                                                                                           gc‑cgcTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGcc          >  2:1418408/1‑150 (MQ=255)
                                                                                                                                             tcgcTGCAGGGCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCt         >  2:1782028/2‑150 (MQ=255)
                                                                                                                                               gcTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCttt       <  2:580235/150‑1 (MQ=255)
                                                                                                                                                 tGCAACCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCaaa                                     >  2:2192774/1‑118 (MQ=255)
                                                                                                                                                 tGCAACCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCaaa                                     <  1:2192774/118‑1 (MQ=255)
                                                                                                                                                    aGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCa  <  1:1875706/150‑1 (MQ=255)
                                                                                                                                                    aGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCa  <  1:306469/150‑1 (MQ=255)
                                                                                                                                                     gCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAg                                                 >  1:2146077/1‑102 (MQ=255)
                                                                                                                                                      |                                                                                                                                                   
CGACGCCATCGGCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCA  >  NC_002947/3883466‑3883762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑