Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,883,616 C→G 5.2% A197A (GCC→GCG) ‡ PP_3428 → TPR repeat‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,883,6160CG 5.2% 368.8 / 9.4 118A197A (GCC→GCG) ‡PP_3428TPR repeat‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (51/57);  new base G (3/3);  total (56/62)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.97e-01

Only 100 of 121 total aligned reads displayed.

ACGCCATCGGCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCA  >  NC_002947/3883468‑3883762
                                                                                                                                                     |                                                                                                                                                  
aCGCCATCGGCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGccc                                                                                                                                                   >  1:166737/1‑150 (MQ=255)
    cATCGGCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCa                                                                                                                                               >  1:2973/1‑150 (MQ=255)
       cGGCCTTTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGGGCTGCagcg                                                                                                                                            <  2:1112818/150‑1 (MQ=255)
        ggCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCCCGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:2121790/150‑1 (MQ=255)
        ggCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:669814/150‑1 (MQ=255)
        ggCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:1506495/150‑1 (MQ=255)
        ggCCTCTATTTCGGCCCCCGGCAGTCAGCCCTGGAGCAATACCAGACAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGTCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcga                                                                                                                                           <  1:2242802/150‑1 (MQ=255)
           ctctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGcc                                                                                                                                                    <  1:2400169/138‑1 (MQ=255)
           ctctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGcc                                                                                                                                                    >  2:2400169/1‑138 (MQ=255)
           ctctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCagcgagcg                                                                                                                                        >  2:1259132/1‑150 (MQ=255)
            tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGCGCGACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  1:1980046/1‑150 (MQ=255)
            tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  2:401741/1‑150 (MQ=255)
            tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  2:4803/1‑150 (MQ=255)
            tctATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAgcgc                                                                                                                                       >  1:1591247/1‑150 (MQ=255)
                tttCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTcgc                                                                                                                                   <  2:431742/150‑1 (MQ=255)
                tctCGGCCCTCTGCAGTCAGCCCGGGAGAAATACCAGCAAGCCCTGGAGCATTAGTTACAGGAGGCCGACGCCCAAGCGCACCTCGCGCGCCTGTACCTGCACGAAAACGCCTACACGCACGC‑CGCTGCAGCACTGCAGCGAGCGCTcgc                                                                                                                                   <  2:933369/148‑1 (MQ=255)
                    ggCCCCCTGCAGTCCGCCCTGGCCCTGTATCGGGAAGGCCTGGAGCAACAGCCTGAAGATGCGTGTTGTGGTGGGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGtt                                                                                                                               <  1:655974/150‑1 (MQ=255)
                      cccccTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGc                                                                                                                             >  2:729271/1‑150 (MQ=255)
                         ccTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGcccc                                                                                                                          >  1:1322655/1‑150 (MQ=255)
                           tGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCg                                                                                                                        <  1:1228928/150‑1 (MQ=255)
                            gCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCgg                                                                                                                       <  1:401543/150‑1 (MQ=255)
                               gTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCaa                                                                                                                    <  2:1591247/150‑1 (MQ=255)
                                tCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGAGGTTGCCCCCGGCAAc                                                                                                                   >  2:1066446/1‑150 (MQ=255)
                                     ccTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGa                                                                                                              >  1:2166018/1‑150 (MQ=255)
                                      cgggAGCAATACCAGCAACCTGTGGAGCGACACCCTGAAGATGCCGACGCCCAAGTACAACTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCACTGCAGCGAGCGCTCGCGGTTGCACCCGGCAACCTCCAt                                                                                                             <  2:350629/148‑1 (MQ=255)
                                      cTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             <  1:1965654/150‑1 (MQ=255)
                                       tGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATG                                                                                                            >  2:232186‑M1/1‑150 (MQ=255)
                                       tGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGAGGTTGCCCCCGGCAACCTCGagc                                                                                                            <  1:1066446/150‑3 (MQ=255)
                                           gCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCTCGCTGCAGGGCTGCagcgg                                                                                                                                           >  1:114883/1‑115 (MQ=255)
                                           gCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGCTCGCTGCAGGGCTGCagcgg                                                                                                                                           <  2:114883/116‑2 (MQ=255)
                                               tACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG                                                                                                    >  2:1970255‑M1/1‑150 (MQ=255)
                                               tACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG                                                                                                    >  1:470774‑M1/1‑150 (MQ=255)
                                               tACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACCC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCG                                                                                                    >  1:897352‑M1/1‑150 (MQ=255)
                                                 ccAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGAc                                                                                                  >  2:1875706/1‑150 (MQ=255)
                                                  cAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACt                                                                                                 >  2:592933/1‑150 (MQ=255)
                                                  cAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACt                                                                                                 >  1:606812/1‑150 (MQ=255)
                                                   aGCACGCCCTGGGGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTc                                                                                                <  2:1980046/150‑1 (MQ=255)
                                                      aaGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             <  2:650077/134‑1 (MQ=255)
                                                      aaGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             >  1:650077/1‑134 (MQ=255)
                                                         cccTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTAc                                                                                          <  2:1304176/150‑1 (MQ=255)
                                                         cccTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGGGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTAc                                                                                          <  1:133850/150‑1 (MQ=255)
                                                           cTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAt                                                                                                             <  2:662865/129‑1 (MQ=255)
                                                              gAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCTGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTg                                                                                     <  2:523769/150‑1 (MQ=255)
                                                                 cAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTc                                                                                  <  1:1609242/150‑1 (MQ=255)
                                                                     aGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGc                                                                              >  2:897352‑M2/1‑149 (MQ=255)
                                                                       ccTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCa                                                                                                                                               <  2:858467/83‑1 (MQ=255)
                                                                       ccTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCa                                                                                                                                               >  1:858467/1‑83 (MQ=255)
                                                                       ccTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgc                                                                            <  2:1512487‑M2/150‑4 (MQ=255)
                                                                         tGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCC‑GGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgccag                                                                         >  2:2285660‑M2/1‑144 (MQ=255)
                                                                              aTGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCATGCAGAGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGcc                                                                     <  1:901509/150‑1 (MQ=255)
                                                                                  cGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGccacca                                                                 <  2:166737/150‑1 (MQ=255)
                                                                                     cGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCacga                                                              <  1:2261054/150‑1 (MQ=255)
                                                                                        ccAAGTGCACCTGGCGCGCCTTTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGc                                                           >  1:619617/1‑150 (MQ=255)
                                                                                        ccAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGGGCTGCagcggc                                                                                                                                          <  2:2069021/71‑3 (MQ=39)
                                                                                        ccAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGGGCTGCagcggc                                                                                                                                          >  1:2069021/1‑69 (MQ=39)
                                                                                        ccAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGc                                                           >  1:1025419/1‑150 (MQ=255)
                                                                                         cAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCacgac                                                             <  1:429379/147‑1 (MQ=255)
                                                                                         cAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCacgac                                                             >  2:429379/1‑147 (MQ=255)
                                                                                          aaGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCTCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGc                                                                              <  1:465394‑M2/129‑2 (MQ=255)
                                                                                          aaGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCTCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGc                                                                              >  2:465394‑M2/1‑128 (MQ=255)
                                                                                            gTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCCGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAACGCCAGGGCCACCGCGACGCCTcc                                                       >  2:310904/1‑150 (MQ=255)
                                                                                                aCCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCaa                                                                                                                    <  1:2204376/85‑1 (MQ=255)
                                                                                                aCCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCaa                                                                                                                    >  2:2204376/1‑85 (MQ=255)
                                                                                                  cTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgc                                                                            >  2:672450‑M2/1‑120 (MQ=255)
                                                                                                  cTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGcgc                                                                            <  1:672450‑M2/123‑4 (MQ=255)
                                                                                                   tGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGTTGTAGCACAGCAGGGAGCGCTCGCGGTTTCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAgg                                                >  1:1623946/1‑150 (MQ=255)
                                                                                                    ggCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCg                                                     <  2:2285790/144‑1 (MQ=255)
                                                                                                       gcgcCTGTCGCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGAGGCCCTGGCGctcgagcaggcgtacctgagtcgccagg                                                                        <  1:737465‑M1/122‑29 (MQ=255)
                                                                                                        cgcCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTg                                           <  2:1673649/150‑1 (MQ=255)
                                                                                                         gcCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTgg                                          <  2:1857765/150‑1 (MQ=255)
                                                                                                               aCCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAg                                    <  1:4803/150‑1 (MQ=255)
                                                                                                                ccTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGc                                   >  2:306469/1‑150 (MQ=255)
                                                                                                                  tGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGccc                                                                                                                           >  2:1228996/1‑60 (MQ=255)
                                                                                                                  tGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGccc                                 >  2:1394977/1‑150 (MQ=255)
                                                                                                                  tGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGccc                                 >  2:342739/1‑150 (MQ=255)
                                                                                                                   gCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCTCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCt                                <  1:972564/150‑1 (MQ=255)
                                                                                                                    cACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGctcgagcaggcgtacctgagtcgccag                                                                         >  2:2009664‑M1/1‑81 (MQ=255)
                                                                                                                    cACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTg                               <  1:729271/150‑1 (MQ=255)
                                                                                                                        aaaaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGa                                                                                <  1:116105/97‑1 (MQ=255)
                                                                                                                        aaaaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGa                                                                                >  2:116105/1‑97 (MQ=255)
                                                                                                                        aaaaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGgcgc                           >  1:1581898/1‑150 (MQ=255)
                                                                                                                          aaCGACTACACGCACGC‑CGCTGCAGCTTTACAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTg                         >  1:2245132/1‑150 (MQ=255)
                                                                                                                          aaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGctcgagcaggcgtacctgagtcgcca                                                                          <  1:1392537‑M1/101‑27 (MQ=255)
                                                                                                                          aaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGctcgagcaggcgtacctgagtcgcca                                                                          >  2:1392537‑M1/1‑75 (MQ=255)
                                                                                                                          aaCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGAATAGCACACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTg                         >  1:1956318/1‑150 (MQ=255)
                                                                                                                           aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGATCGCTCGCGTTTGCCCCCGGCACCCTCGATGCCCTGGCGACTGCGGTACGCCTGCTCGCACGATCTGGGCTGGTCGGTTGCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        <  1:2223713/150‑1 (MQ=255)
                                                                                                                           aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAGCCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        <  2:2245132/150‑1 (MQ=255)
                                                                                                                           aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        <  1:477578/150‑1 (MQ=255)
                                                                                                                           aCGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGa                        >  1:1258667/1‑150 (MQ=255)
                                                                                                                             gACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGc                      >  1:200139/1‑150 (MQ=255)
                                                                                                                                     gcacgc‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTc              >  1:969427/1‑150 (MQ=255)
                                                                                                                                         gc‑cgcTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTgg                                          >  1:742264/1‑118 (MQ=255)
                                                                                                                                         gc‑cgcTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTgg                                          <  2:742264/118‑1 (MQ=255)
                                                                                                                                               tGCAACCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCaaa                                     >  2:2192774/1‑118 (MQ=255)
                                                                                                                                                gCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTg    <  2:1623946/150‑1 (MQ=255)
                                                                                                                                                  aGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCa  <  1:1875706/150‑1 (MQ=255)
                                                                                                                                                  aGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCa  <  1:342739/150‑1 (MQ=255)
                                                                                                                                                  aGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCa  <  1:306469/150‑1 (MQ=255)
                                                                                                                                                   gCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAg                                                 >  1:2146077/1‑102 (MQ=255)
                                                                                                                                                   gCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAg                                                 <  2:2146077/102‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
ACGCCATCGGCCTCTATTTCGGCCCCCTGCAGTCAGCCCTGGAGCAATACCAGCAAGCCCTGGAGCAACAGCCTGAAGATGCCGACGCCCAAGTGCACCTGGCGCGCCTGTACCTGCACGAAAACGACTACACGCACGC‑CGCTGCAGCCCTGCAGCGAGCGCTCGCGGTTGCCCCCGGCAACCTCGATGCCCTGGCGACTCAGGTACGCCTGCTCGAGCGCCAGGGCCACCACGACGCCTCCCGCCAGGTGCTGGGCAAAGCCCTGGCGCTGAGCCCCGACTCGGCCTTTCTGCA  >  NC_002947/3883468‑3883762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑