| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,002,977 | A→T | 9.2% | D64V (GAT→GTT) | PP_3531 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,002,977 | 0 | A | T | 9.2% | 362.9 / 22.3 | 120 | D64V (GAT→GTT) | PP_3531 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (51/58); new base T (6/5); total (57/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.47e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
TCTGCCCTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGACCAGCGAA > NC_002947/4002829‑4003125 | tctGCCCTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGAt < 1:1567658/150‑1 (MQ=255) cccTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAAcc > 2:1016483/1‑150 (MQ=255) cccTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAAcc > 1:2181251/1‑150 (MQ=255) cTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCGGCAGGATAACCTg < 1:2060324/150‑1 (MQ=255) tGGCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGc < 1:1615412/150‑1 (MQ=255) ggCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCg < 2:1259058/150‑1 (MQ=255) gccgccGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCgg < 1:2208212/150‑1 (MQ=255) gccgATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTg < 2:1205730/150‑1 (MQ=255) ccgATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTgg < 2:706717/150‑1 (MQ=255) ccgATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCCGCAGGTTATCCTGCAGGtca < 1:1008797/150‑3 (MQ=255) cgATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGc < 2:911998/150‑1 (MQ=255) gATGACTGGCGCCTGGCCTACGACCGAGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGcc > 1:571386/1‑150 (MQ=255) aCTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCa < 1:316617/150‑1 (MQ=255) tGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAg > 2:2110122/1‑150 (MQ=255) cgcCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTgg < 1:2110122/150‑1 (MQ=255) cgcCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTgg < 2:782174/150‑1 (MQ=255) gcCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGc > 2:1845371/1‑150 (MQ=255) ccTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCt > 2:1986909/1‑150 (MQ=255) ccTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCt < 2:939915/150‑1 (MQ=255) cTACGACAGCGCAGGCATAAGCGTTTACATGAGCAGCGCGGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGACCTGCAAGTGGCTGTACGc > 2:1353787/1‑150 (MQ=255) acgtaaacgcgAATGCCTTCGCGTTTACGTGAGCAGCGCAGGCGCCCCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTCCGTGTGGCCTGCAAGTGGCTGTACGc > 2:338814/8‑150 (MQ=255) tACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGcc > 1:1557430/1‑150 (MQ=255) tACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGcc > 1:2243709/1‑150 (MQ=255) gACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCtgt > 2:2367109/1‑150 (MQ=255) aCCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGGACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCtgtg < 1:654209/150‑1 (MQ=255) ggCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATg > 2:596001/1‑150 (MQ=255) gCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGc > 2:2340915/1‑150 (MQ=255) aTTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTgg < 1:11600/126‑1 (MQ=255) aTTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTgg > 2:11600/1‑126 (MQ=255) aTTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCgg < 1:1680086/150‑1 (MQ=255) ttCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGgc > 2:1512115/1‑150 (MQ=255) gTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGAtgtg > 1:788719/1‑150 (MQ=255) gcagcGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAgg > 2:2263330/1‑150 (MQ=255) cagcGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAggg < 1:2263330/150‑1 (MQ=255) gcgcAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTg < 1:1657354/150‑1 (MQ=255) gcgcCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTTACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGacaaca > 2:330006/1‑150 (MQ=255) cgcCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAacac < 2:788719/150‑1 (MQ=255) ccTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACAccg < 2:1557430/150‑2 (MQ=255) cTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTg > 2:1932368/1‑150 (MQ=255) tCGTCCTACCAGCAGTTTGGGGGTTTCACCACCATGAAAGCCAGCGTGGGCACGCTCACTGACCTGCAGGATAACCAGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTgg < 1:338814/150‑1 (MQ=255) tCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTgg < 1:32696/150‑1 (MQ=255) tCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTgg < 1:596001/150‑1 (MQ=255) gTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGgt > 2:2099181/1‑150 (MQ=255) tCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCaa < 2:1788504/89‑1 (MQ=255) tCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCaa > 1:1788504/1‑89 (MQ=255) cagcagTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGACTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTg < 1:847730/150‑1 (MQ=255) agcagTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTg > 2:2363216/1‑79 (MQ=255) agcagTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTg < 1:2363216/79‑1 (MQ=255) agcagTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCGCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGa > 1:255389/1‑150 (MQ=255) tCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCAt > 2:286735/1‑150 (MQ=255) tCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCAt > 1:1503481/1‑150 (MQ=255) aGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAg < 2:95198/108‑1 (MQ=255) aGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAg > 1:95198/1‑108 (MQ=255) gCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGc < 1:2185812/150‑1 (MQ=255) gCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGATGACCAAACCTCGTGGTACCGGACCACCCAGCTGCCATGGc > 2:1230856/1‑150 (MQ=255) ccATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCgg < 1:385584/150‑1 (MQ=255) cATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGcctcg > 1:2012485/1‑147 (MQ=255) cATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGc > 2:1024810/1‑150 (MQ=255) aTGAAAGCCAGCGTGCGCACGCTCACTGCCCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAggg < 1:2097886/104‑1 (MQ=255) tGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAgg > 2:478339/1‑102 (MQ=255) tGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAgg < 1:478339/102‑1 (MQ=255) tGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGa > 1:801315/1‑150 (MQ=255) tGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGa < 1:1928100/150‑1 (MQ=255) gAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGa > 2:336191/1‑149 (MQ=255) gAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGa < 1:336191/149‑1 (MQ=255) aaGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGc < 1:1230856/150‑1 (MQ=255) aGCCAGCGTGCGCACGCTCACTGACCCGCAGGTTATCCTGCAGGtca > 2:1738695/1‑45 (MQ=9) aGCCAGCGTGCGCACGCTCACTGACCCGCAGGTTATCCTGCAGGtca < 1:1738695/47‑3 (MQ=9) cgcACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATc < 2:2181251/150‑1 (MQ=255) cgcACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAACTGGCTGTACGCCTGTCACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGTCCGCGGGACATc > 1:753167/1‑150 (MQ=255) gcACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGa < 1:745539/91‑1 (MQ=255) gcACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGa > 2:745539/1‑91 (MQ=255) aCGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTg < 1:1016483/150‑1 (MQ=255) aCGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTg < 2:2141600/150‑1 (MQ=255) gCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTa < 2:582508/48‑1 (MQ=255) gCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTa > 1:582508/1‑48 (MQ=255) tCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGa > 1:1212440/1‑150 (MQ=255) ccttaCCCGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCGGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGaaa < 1:1845371/146‑1 (MQ=255) aCTGACCTGCAGGATAACCTGCGGGTGGCCTGTAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCgg < 2:464961/135‑1 (MQ=255) aCTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGacaa < 2:744032/86‑1 (MQ=255) aCTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGacaa > 1:744032/1‑86 (MQ=255) aCTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGaaa > 2:962224/1‑150 (MQ=255) cacccgCAGGTTATCCTGCAGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGc < 1:2333412/113‑1 (MQ=255) caCCCGCAGGTTATCCTGCAGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGc > 2:2333412/2‑118 (MQ=255) acccgCAGGTTATCCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCt < 2:913335/138‑1 (MQ=255) aCCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTg > 1:257193/1‑140 (MQ=255) aCCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTg < 2:257193/140‑1 (MQ=255) aCCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGa < 2:1212440/150‑1 (MQ=255) aCCCGCAGGTTATCCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCt > 1:913335/1‑142 (MQ=255) aCCCGCAGGTTATCCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGa > 2:541148/1‑150 (MQ=255) aCCCGCAGGTTATCCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGa > 2:1383547/1‑150 (MQ=255) cccgCAGGTTATCCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTgg > 2:2130421/4‑88 (MQ=255) cccgCAGGTTATCCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTgg < 1:2130421/85‑1 (MQ=255) ccTGCAGGATAACCTGCGGGTGGCCTGCAAACGGCAGTTCAGACGTGTGCTGATGCGGCTGCTGGATGTGGAGACTTACTGCACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGAc < 1:2340915/150‑1 (MQ=255) tGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATgg > 1:1431947/1‑113 (MQ=255) tGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATgg < 2:1431947/113‑1 (MQ=255) tGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGACCa < 1:1986909/150‑1 (MQ=255) tGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGACCa > 1:2091610/1‑150 (MQ=255) tGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGACCa > 1:1276638/1‑150 (MQ=255) gATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGACCAGCGaa > 1:2013436/1‑150 (MQ=255) | TCTGCCCTGGCCGCCGATGACTGGCGCCTGGCCTACGACCGCGAAGGCATTCGCGTTTACGTGAGCAGCGCAGGCGCCTCGTCCTACCAGCAGTTTCGTGGTGTCAGCACCATGAAAGCCAGCGTGCGCACGCTCACTGACCTGCAGGATAACCTGCGGGTGGCCTGCAAGTGGCTGTACGCCTGTGACCAGATGCGGCTGCTGGATGTGGAGGGTGACAACACCTGGGTGTACCTGACCACCCAGCTGCCATGGCCGGCGAGGCCGCGGGACATCGTGCTGAAAGTGACCAGCGAA > NC_002947/4002829‑4003125 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |