| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,297,638 | G→A | 7.6% | R154C (CGC→TGC) | PP_3768 ← | shikimate 5‑dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,297,638 | 0 | G | A | 7.6% | 329.5 / 12.1 | 116 | R154C (CGC→TGC) | PP_3768 | shikimate 5‑dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (52/55); new base A (5/4); total (57/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
TCGGGAAACGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGT > NC_002947/4297490‑4297787 | tCGGGAAACGCCAGCTCTTCTGCCTCCAGCCCGCCGTCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGt > 1:572576/1‑150 (MQ=255) gggAAACGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGc > 2:662054/1‑150 (MQ=255) aaaCGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAAc < 1:1759091/150‑1 (MQ=255) aCGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACga < 1:2265023/150‑1 (MQ=255) cGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACgag < 1:1617862/150‑2 (MQ=255) cccAGCTCTTCTGACTCTAGCCCGCCTGCCTTACCGATCCGCGTCACGTTCCCCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGTCTCCCAGCAATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgagc < 2:1977563/149‑3 (MQ=255) ccAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgagca < 1:482062/150‑4 (MQ=255) ctctTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGcc > 1:1302634/1‑150 (MQ=255) tctGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCg < 2:2111330/150‑1 (MQ=255) tctGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCg < 2:1036907/150‑1 (MQ=255) gCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCa > 2:1621012/1‑150 (MQ=255) ccTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCaa > 1:1929377/1‑150 (MQ=255) cTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCaaa < 2:1548497/150‑1 (MQ=255) cAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCtt < 2:1966654/140‑1 (MQ=255) cAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCtt > 1:1966654/1‑140 (MQ=255) gCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCgcgc < 2:1855995/150‑1 (MQ=255) ccATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCa > 1:2035762/1‑150 (MQ=255) ccATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCa > 2:502121/1‑150 (MQ=255) cATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCaa < 2:860032/150‑1 (MQ=255) aTACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCgg < 1:283079/139‑1 (MQ=255) aTACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCgg > 2:283079/1‑139 (MQ=255) tACCGTTCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCGGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAgg < 1:748899/150‑1 (MQ=255) cGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgagca > 2:1623267/1‑114 (MQ=255) tCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgag < 2:1018956/112‑2 (MQ=255) tCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCACGCAACgag > 1:1018956/1‑111 (MQ=255) cGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTg < 2:1511026/101‑1 (MQ=255) cGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTg > 1:1511026/1‑101 (MQ=255) cGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCt < 2:2035924/150‑1 (MQ=255) gTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCtt > 1:1026849/1‑150 (MQ=255) gTTCACCAGCATGGGCGGGCAAATATCGCCTGGCTCAGGCGCCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGAGCACCGATGCTGCCTTCCGCAAACCCCACATTGCGCCAGGCGCTGGGAACGGGCtt > 2:464145/1‑150 (MQ=255) ttCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTg < 2:2045598/150‑1 (MQ=255) cAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCAt > 1:2219047/1‑150 (MQ=255) cAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCAt < 1:1547254/150‑1 (MQ=255) gCATCGCCGGGCAAATGTCGCCCGCCTCCGGCACCCAGCGACAACCACCGACATCCGCCAACCGCCGCCCGGCCTGCTCGTTGCGTGCAACGAGGATGCCTTCGGCCAACCCGCCATCGCGCCAGGCGCTGGCCGCGGCCTTGACCCTGc < 2:723939/150‑1 (MQ=255) gggcCAATGTAGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCTCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTg > 2:1297263/1‑150 (MQ=255) tGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCa > 1:1050214/1‑150 (MQ=255) gTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAg < 2:1903164/150‑1 (MQ=255) gTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAg < 2:2218969/150‑1 (MQ=255) gCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGc > 1:2125761/1‑150 (MQ=255) ccTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGGCGGAGGTAAACCCAGCATCGCGCAAGGCGCTGGCCATGGCCTCACCCAAGCCACCGCTGCCTCGCAGGGCa > 1:44385/1‑150 (MQ=255) ggCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAg > 1:431152/1‑150 (MQ=255) gCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCaa < 1:1433602/100‑1 (MQ=255) gCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCaa > 2:1433602/1‑100 (MQ=255) gCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGc < 1:1566488/135‑1 (MQ=255) gCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGATGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGc > 2:1566488/1‑135 (MQ=255) cTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGc < 2:465488/150‑1 (MQ=255) tCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGcc < 2:1050214/150‑1 (MQ=255) aGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGGAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGt < 2:572576/150‑1 (MQ=255) ggCACCCAGCGATAACCACAGACAACACCCAACCTCTTCCCGTCTTTCTCTGTGCGTGCAACGATGATGCCTTCGTCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTg < 1:1140848/150‑1 (MQ=255) gCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAgg < 2:554534/137‑1 (MQ=255) gCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAgg > 1:554534/1‑137 (MQ=255) cACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAAcc < 2:520624/80‑1 (MQ=255) cACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAAcc > 1:520624/1‑80 (MQ=255) aCCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGccc > 1:1358883/1‑150 (MQ=255) cccAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCg < 2:1929377/150‑1 (MQ=255) ccAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGc < 2:2140607/111‑1 (MQ=255) ccAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCAt < 1:1600018/114‑1 (MQ=255) cAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGa < 1:16241/150‑1 (MQ=255) cAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGa < 1:2114664/150‑1 (MQ=255) gATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGa < 2:2125761/150‑1 (MQ=255) aaCCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTgg < 1:1013725/102‑1 (MQ=255) ccACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGa > 2:1684147/1‑150 (MQ=255) ccACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGa < 2:1499272/150‑1 (MQ=255) cacaGACCTCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGGATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGAt < 1:2222038/150‑1 (MQ=255) cacaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGAt > 1:1433513/1‑150 (MQ=255) acaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAg > 1:1629514/1‑127 (MQ=255) acaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAg < 2:1629514/127‑1 (MQ=255) acaGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAAAGATGATGCCCCACGCAGACCCGGCAGCTCGCAATGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATg > 1:1500531/1‑150 (MQ=255) aGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGAAAGGCGCTGGCCACGGCCTTGGCCa > 1:325096/1‑99 (MQ=255) aGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGAAAGGCGCTGGCCACGGCCTTGGCCa < 2:325096/99‑1 (MQ=255) gACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTg < 2:1359640/150‑1 (MQ=255) aCATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGa < 2:1433513/150‑1 (MQ=255) cGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGa > 1:1328470/1‑145 (MQ=255) cGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGa < 2:1328470/145‑1 (MQ=255) gCCAACTGACGCCCGGCCTTCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTgg < 1:1261167/76‑1 (MQ=255) gCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAAcc > 2:2306279/1‑55 (MQ=255) gCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAAcc < 1:2306279/55‑1 (MQ=255) gCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCgg > 2:546472/1‑58 (MQ=255) gCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCgg < 1:546472/58‑1 (MQ=255) gCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTgg > 2:1261167/1‑76 (MQ=255) gCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGc > 2:1744887/1‑150 (MQ=255) tGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTgg < 2:1512589/150‑1 (MQ=255) gCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCt < 2:667402/126‑1 (MQ=255) gCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCt > 1:667402/1‑126 (MQ=255) cccGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCAc > 1:785166/1‑150 (MQ=255) ccGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGc > 2:2238635/1‑88 (MQ=255) ccGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGc < 1:2238635/88‑1 (MQ=255) ccGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACg > 2:2315390/1‑150 (MQ=255) ccGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACg > 2:847715/1‑150 (MQ=255) ccTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCa > 1:1199487/1‑150 (MQ=255) cTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAg < 1:1684147/150‑1 (MQ=255) cTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAg < 1:298132/150‑1 (MQ=255) cTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAg < 1:1744887/150‑1 (MQ=255) tGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAgg > 2:1347470/1‑150 (MQ=255) tGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAgg > 2:427805/1‑150 (MQ=255) atCGTTGCACGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTa > 2:1009620/2‑150 (MQ=255) ttGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCg > 1:1493140/1‑150 (MQ=255) cGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGgtg < 2:431152/150‑1 (MQ=255) gTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGgtgt < 1:1297263/150‑1 (MQ=255) gTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGgt < 1:916156/148‑1 (MQ=255) | TCGGGAAACGCCAGCTCTTCTGCCTCCAGCCCGCCTGCCATACCGATCGGCGTCACGTTCACCAGCATGGGCGGGCAAATGTCGCCTGGCTCAGGCACCCAGCGATAACCACAGACATCCGCCAACTGACGCCCGGCCTGCTCGTTGCGTGCAACGATGATGCCTTCGGCAAACCCGGCATCGCGCAAGGCGCTGGCCACGGCCTTGGCCATGCCACCGCTGCCTCGCAGGGCAAAGGCCGTGCCCGGATCGACCTGATGCTGAGCCAGCAATTGGCGCACGGCCAGGTAATCGGTGT > NC_002947/4297490‑4297787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |