| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,447,887 | C→G | 11.3% | intergenic (‑279/‑43) | nicC ← / → nicX | 6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,447,887 | 0 | C | G | 11.3% | 261.7 / 19.0 | 88 | intergenic (‑279/‑43) | nicC/nicX | 6‑hydroxynicotinate 3‑monooxygenase/2,5‑dihydroxypyridine 5,6‑dioxygenase |
| Reads supporting (aligned to +/- strand): ref base C (44/34); new base G (4/6); total (48/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
AATCCGGTTGATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTC > NC_002947/4447738‑4448033 | aaTCCGGTTGATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCAc < 1:752519/150‑1 (MQ=255) gTTGATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCAt > 2:716115/1‑150 (MQ=255) ttGATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATg < 2:128243/150‑1 (MQ=255) tGATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGcctgg > 2:1063656/1‑147 (MQ=255) tGATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCG‑TTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGcctggt > 1:714087/1‑146 (MQ=255) gATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAATAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGt < 2:2008464/150‑1 (MQ=255) gATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGt < 2:1428962/150‑1 (MQ=255) aTTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCG‑TTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgc < 2:714087/150‑1 (MQ=255) ttGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTgc > 1:1920413/1‑150 (MQ=255) tGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgct < 1:1063656/150‑2 (MQ=255) tGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgct < 1:1165664/150‑2 (MQ=255) ccGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTCTACAGAGCACAAGTAAGTTTTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgctgcatc < 1:2099839/150‑7 (MQ=255) gTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGt > 2:1913478/1‑150 (MQ=255) gTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGt > 2:1303191/1‑150 (MQ=255) tccgatctCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAAc < 1:571444/143‑1 (MQ=255) cAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTgcgc < 2:345062/132‑1 (MQ=255) cAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTgcgc > 1:345062/1‑132 (MQ=255) aaTGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAg < 1:1183311/150‑1 (MQ=255) tAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGc > 2:1671177/1‑150 (MQ=255) aCGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCg < 2:2223658/150‑1 (MQ=255) tttGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑Tg > 1:1794783/1‑150 (MQ=255) aCAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgc > 1:851139/1‑105 (MQ=255) aCAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgc < 2:851139/105‑1 (MQ=255) cAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAAt < 1:1303191/150‑1 (MQ=255) aGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATg < 2:1920413/150‑1 (MQ=255) aCTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACaa < 1:920558/150‑1 (MQ=255) cTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGa < 2:1618527/138‑1 (MQ=255) cTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGa > 1:1618527/1‑138 (MQ=255) ttGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACt > 1:1941814/1‑150 (MQ=255) ttGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACt > 1:504190/1‑150 (MQ=255) ttGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACt > 1:2155773/1‑150 (MQ=255) tcgctGTCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGATATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACACCGATGCCGG‑TGAGCAATGCACAACTG‑‑Accgt > 2:1189167/1‑148 (MQ=255) gctGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgctgc > 2:27996/1‑88 (MQ=38) gctGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCATGGCAGTGCC‑TGGTgctgc < 1:27996/91‑4 (MQ=38) ggCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGt > 1:1099254/1‑150 (MQ=255) cAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTc < 1:2014197/150‑1 (MQ=255) gATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑Accc > 1:2146170/1‑139 (MQ=255) gATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑Accc < 2:2146170/139‑1 (MQ=255) aTGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGAt < 2:1678215/112‑1 (MQ=255) aTGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGAt > 1:1678215/1‑112 (MQ=255) gCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCAc > 1:1785660/1‑150 (MQ=255) cGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACg < 1:1189167/150‑1 (MQ=255) aTCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGaa < 2:1785660/150‑1 (MQ=255) aTCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGaa > 2:730038/1‑150 (MQ=255) aTCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGaa < 1:716115/150‑1 (MQ=255) tCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGt < 1:774611/66‑1 (MQ=255) tCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGt > 2:774611/1‑66 (MQ=255) tCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAg < 2:2155773/150‑1 (MQ=255) tCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAg > 1:2155658/1‑150 (MQ=255) ccttcacaAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCAAAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAg > 1:1891849/5‑150 (MQ=255) tGCACAAGTAGGGGGTACACACTGTTATTTTGCACCGAGAGGCAGCACCA‑GGCACTGCCATGGTGCGACCCTGTCAACGCAACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCCCGTACTCAAGcc > 2:486892/1‑149 (MQ=255) gCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTc > 2:1216989/1‑132 (MQ=255) gCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTc < 1:1216989/132‑1 (MQ=255) aaGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCAATGGTTCGCCCCTGTCAACGCCACACAAGCGAACCCCGATGCCGC‑TGAACAATACACAACTG‑‑ACCCAGAAGTTCGAGCACGTACTGAAGCTGtctc > 2:1027196/1‑150 (MQ=255) gTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGa > 2:2065233/1‑150 (MQ=255) tAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAg < 2:1099254/150‑1 (MQ=255) tAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAg < 1:730038/150‑1 (MQ=255) aGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGt < 2:1891849/150‑1 (MQ=255) gggTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTg > 2:291677/1‑150 (MQ=255) ggTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTgg > 2:1062012/1‑150 (MQ=255) gtgtACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGa < 1:2065233/150‑1 (MQ=255) gtgtACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGa > 2:581682/1‑150 (MQ=255) acTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTTCGCCCCTGTCAACGCCAACCAGGAGAACCCCGCTGACCG‑TGTGCAAGGCACAACGG‑‑AGACAGATCTTCGAGCACGTACTGAAGCTGTCTCGCGTGGACGAACCGc > 2:642024/1‑150 (MQ=255) tattatTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCTCCCCTGTCAACGCACACCAGGAGAAAACCAAGATCGGAAGAGCA‑‑‑CACGTCTGAAATCCAGATGTTCGAGCACGTACTGAAGCTGTCTAGAATAGACGAAACGCag > 1:551063/1‑150 (MQ=255) tattatTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAACGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCag > 2:1277542/1‑150 (MQ=255) attattTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCaga > 2:1108640/1‑150 (MQ=255) ttattTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGca > 2:558510/1‑91 (MQ=255) ttattTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCGGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGca < 1:558510/91‑1 (MQ=255) tttGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTg < 2:2034483/150‑1 (MQ=255) tGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGc < 2:504190/150‑1 (MQ=255) cACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGccc > 2:1521556/1‑149 (MQ=255) aCCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGt < 1:581682/150‑1 (MQ=255) ttataTGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGc < 2:551063/146‑1 (MQ=255) cggggtGCAGCACTA‑CGCGCTGGCATGGTGCGCCCCTGTCAACGCAACCCAGGAGAACCCCGAGGCCGG‑GGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGc > 2:1296928/6‑150 (MQ=255) gcagcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGa < 1:1105775/116‑1 (MQ=255) gcagcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGa > 2:1105775/1‑116 (MQ=255) cagcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAagag < 1:291677/150‑1 (MQ=255) agcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGc > 1:1703710/1‑150 (MQ=255) gcaCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGcc > 1:574244/1‑150 (MQ=255) caCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGAGTGGCCGTGCTCAAGAGCCa > 1:1929660/1‑150 (MQ=255) cccA‑GGCACTGCCATGGTGCGCCCCTGTCACCGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCac < 2:1638057/149‑1 (MQ=255) aCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTTGCCGTGCTCAAGAGCCac < 1:1062012/150‑1 (MQ=255) aCCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCac > 1:1638057/1‑150 (MQ=255) cA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGt > 2:335025/1‑104 (MQ=255) cA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGt < 1:335025/104‑1 (MQ=255) a‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCactac > 2:2128038/1‑150 (MQ=255) agacACTGCCATGGTGCCCCCCTGTCAAAGCCACCCAGAAGAACTTCGATTAAAC‑AGAATTAAGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTAACGCTGTCTCGAATTGACAAACCTCCACTCGTGCCCGTGCTAAAAAGCCaatac > 2:329235/4‑150 (MQ=255) ggCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCGGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCactact > 2:1027048/1‑150 (MQ=255) gCACTGCCATGGTGCGCCCCTGTCACCGCTGCCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGCTGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTc > 1:2245749/1‑150 (MQ=255) | AATCCGGTTGATTGTTACCGTAAATACTGGTCAATGTGTGGATAGGTAACGTTTGAACAGATCACTTGCGCTCGCTGGCAGGATGCGTTTTCATCTGCACAAGTAGGGTGTACACACTATTATTTTGCACCGAGATGCAGCACCA‑GGCACTGCCATGGTGCGCCCCTGTCAACGCCACCCAGGAGAACCCCGATGCCGG‑TGAGCAATGCACAACTG‑‑ACCCAGATGTTCGAGCACGTACTGAAGCTGTCTCGAGTGGACGAAACGCAGAGCGTGGCCGTGCTCAAGAGCCACTACTC > NC_002947/4447738‑4448033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |