| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,484,771 | A→T | 8.1% | intergenic (+371/‑98) | PP_3976 → / → PP_3977 | isochorismatase family hydrolase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,484,771 | 0 | A | T | 8.1% | 265.7 / 12.4 | 86 | intergenic (+371/‑98) | PP_3976/PP_3977 | isochorismatase family hydrolase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (38/41); new base T (3/4); total (41/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.39e-01 | |||||||||||
TCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGATTTCC > NC_002947/4484624‑4484920 | tCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGCCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATc > 1:1132834/1‑150 (MQ=255) aaaCCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAg < 2:1299866/150‑1 (MQ=255) aaaCCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAg < 1:938732/150‑1 (MQ=255) ccTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGGGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCt > 2:333638/1‑150 (MQ=255) ccTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCt < 1:2388708/150‑1 (MQ=255) cTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGATTATTCAGGGCtt < 2:2083657/150‑1 (MQ=255) aGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAat < 1:2007440/150‑1 (MQ=255) tCGCAACTGCCAAGCAGATTATGTTGGCGGCAAGTCGGTCACAGCATGCGGAAATGAATATAGAAATGCGGGCGTGATCCGTATGAAAAAGGTAGAAAATCTGAGCCCCAAAAACGCAAAAAGCCCTAAATAATCAGGGCTTTGAATATg > 2:833526/1‑150 (MQ=37) tCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATg < 2:181858/150‑1 (MQ=255) cAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAgg > 2:714854/1‑135 (MQ=255) cAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAgg < 1:714854/135‑1 (MQ=255) aaCGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCgg > 1:603097/1‑150 (MQ=255) aaCGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCgg > 1:856551/1‑150 (MQ=255) cGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGaa < 2:818803/150‑1 (MQ=255) ggCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAg > 1:1408612/1‑150 (MQ=255) cAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGATTATTCAGGGCtttt > 1:1529266/1‑133 (MQ=255) cAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGATTATTCAGGGCtttt < 2:1529266/134‑2 (MQ=255) cAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGt < 1:1297566/150‑1 (MQ=255) aaGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGc > 1:456264/1‑147 (MQ=255) aaGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGc < 2:456264/147‑1 (MQ=255) gccgatcatGTTGGCGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTaga > 2:2089122/4‑150 (MQ=255) aGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAgaga < 1:1479841/150‑1 (MQ=255) atgTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGCTTCac < 2:603097/150‑2 (MQ=255) tgTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCaaa < 1:2057299/150‑1 (MQ=255) ttGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAAcc > 1:1782707/1‑150 (MQ=255) atatCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCa > 1:939614/1‑105 (MQ=255) atatCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCa < 2:939614/105‑1 (MQ=255) tCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAgg > 1:1742196/1‑150 (MQ=255) gTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCaaa > 1:1475636/1‑134 (MQ=255) gTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCaaa < 2:1475636/134‑1 (MQ=255) cacaGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTcct < 2:1509439/150‑1 (MQ=255) aGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTcctacc < 2:1813823/150‑1 (MQ=255) cATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTcctaccta > 2:739134/1‑150 (MQ=255) cATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTcctaccta > 1:2129032/1‑150 (MQ=255) tGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTTAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACa > 1:838225/1‑150 (MQ=255) cGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGa < 1:1755947/150‑1 (MQ=255) aaaTGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACtt > 2:752944/1‑150 (MQ=255) tGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGGGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAAt < 1:333638/150‑1 (MQ=255) tGAACAGAGAAAGGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAAt < 2:834431/150‑1 (MQ=255) aaCAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTTAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAAttt < 2:838225/150‑1 (MQ=255) agagAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAGAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTg > 1:203231/1‑150 (MQ=255) agagAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTg > 1:368813/1‑150 (MQ=255) ggCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTc < 2:856551/150‑1 (MQ=255) aTCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTc > 2:1671911/1‑150 (MQ=255) tCCGTATGACAAGGGTAGAAAATCGGAGCCTCAAAAACGCAAAAAGGCCTGAATAATCAGGGCGTTGAATATGGCGGAAGCTTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTAATCGGTAGCTCGACGccc < 2:660017/150‑1 (MQ=255) tCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTcc < 2:1742196/150‑1 (MQ=255) gTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCttt > 1:596262/1‑150 (MQ=255) gTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCGAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCttt > 1:2104837/1‑150 (MQ=255) tATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTa < 1:1453646/80‑1 (MQ=255) tATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTa > 2:1453646/1‑80 (MQ=255) tATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTa > 1:2122266/1‑150 (MQ=255) aTGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTAt < 2:2104837/150‑1 (MQ=255) aaGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACt < 2:2129032/150‑1 (MQ=255) gggTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATc > 1:359009/1‑90 (MQ=255) gggTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATc < 2:359009/90‑1 (MQ=255) gggTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGt > 1:1822880/1‑150 (MQ=255) ggTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTa > 1:469204/1‑150 (MQ=255) gTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTaa > 2:1579351/1‑150 (MQ=255) tAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAg < 2:1782707/150‑1 (MQ=255) tAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAg < 1:2089122/150‑1 (MQ=255) aGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGc < 2:596262/150‑1 (MQ=255) gAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCt < 2:2122266/150‑1 (MQ=255) aaaTCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAACATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAg < 2:734803/150‑1 (MQ=255) ccccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 1:739134/150‑1 (MQ=255) ccccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCgg < 1:804032/150‑1 (MQ=255) cccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTcctac < 1:1325640/85‑1 (MQ=255) cccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTcctac > 2:1325640/1‑85 (MQ=255) cccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCggg < 1:752944/150‑1 (MQ=255) ccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGt > 2:461656/1‑150 (MQ=255) ccAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGt > 2:1239707/1‑150 (MQ=255) aaaaaCGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGa > 1:1075822/1‑126 (MQ=255) aaaaaCGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGa < 2:1075822/126‑1 (MQ=255) aaaaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACt < 2:371577/120‑1 (MQ=255) aaaaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACt > 1:371577/1‑120 (MQ=255) aaaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCaa > 2:896772/1‑150 (MQ=255) aaaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGAGCTTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGc > 2:2218812/1‑124 (MQ=255) aaaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGc < 1:2218812/124‑1 (MQ=255) aaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGAc > 1:472523/1‑104 (MQ=255) aaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGAc < 2:472523/104‑1 (MQ=255) aaaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAg > 2:1407513/1‑150 (MQ=255) aaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGAc < 1:1405453/103‑1 (MQ=255) aaGCCCTGATTATTCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGAc > 2:1405453/1‑103 (MQ=255) aaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTaa < 2:1995892/121‑1 (MQ=255) aaGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTaa > 1:1995892/1‑121 (MQ=255) ccTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCa < 1:1173678/150‑1 (MQ=255) cTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAg > 1:2076149/1‑150 (MQ=255) taatCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGAttt > 2:212089/1‑150 (MQ=255) atCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGATTTcc < 2:203231/150‑1 (MQ=255) | TCAAACCCTGGCAGGTCGCAACGGCCAAGCAGATGATGTTGGAGGCATATCGGTCACAGCATGCGGAAATGAACAGAGAAATGCGGGCGTGATCCGTATGACAAGGGTAGAAAATCGGAGCCCCAAAAACGCAAAAAGCCCTGAATAATCAGGGCTTTGAATATGGCGGAAGCGTAGAGATTCAAACCCTTATCCTAGGCTCCTACCTACAGACTTAATTTCTGATCGGTAGCTCGACGTCCTTTATGGACTGTAAGCTAGCAAAACCGGGTCTTCCGCGCAAGCTTCAGGATTTCC > NC_002947/4484624‑4484920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |