| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,832,105 | A→T | 8.7% | intergenic (+35/+117) | pvdS → / ← pvdY | alternative sigma factor/hydroxyproline acetylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,832,105 | 0 | A | T | 8.7% | 272.7 / 14.6 | 92 | intergenic (+35/+117) | pvdS/pvdY | alternative sigma factor/hydroxyproline acetylase |
| Reads supporting (aligned to +/- strand): ref base A (40/43); new base T (4/4); total (44/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01 | |||||||||||
TGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAAAAACCG > NC_002947/4831956‑4832251 | tGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGa > 1:353474/1‑150 (MQ=255)tGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGa > 1:2184354/1‑150 (MQ=255) ccGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGATCCAGGTT‑CGctct < 2:539473/150‑1 (MQ=255) gCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCg > 2:2216922/1‑150 (MQ=255) gCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAAAGCGAGAGCGATCCAGGTT‑CGctctgg > 1:414174/1‑148 (MQ=38) cAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCCGGCCTGAAGATTACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGc > 1:2048322/1‑150 (MQ=255) gAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGGtt > 1:1209150/1‑150 (MQ=255) gAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCtt < 1:1780758/150‑1 (MQ=255) gAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAAAGCGAGAGCGATCCAGGTT‑CGctctggcgt < 2:2369454/150‑6 (MQ=38) aGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCtttt < 2:41526/150‑1 (MQ=255) gACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTttgc < 1:1887795/150‑1 (MQ=255) aTTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTttgcttg > 1:1565846/1‑150 (MQ=255) aTTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTttgcttg > 2:1923468/1‑150 (MQ=255) aTTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTttgcttg < 1:883620/150‑1 (MQ=255) aTTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGAAAACGCCAGAGCGAACCTGGAT‑AGCTCTCGCTTttgcttg > 1:1181634/1‑150 (MQ=255) gCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAAAGCGAGAGCGATCCAGGTT‑CGCTCTGGCGTTTGCTTGCAg < 2:414174/150‑1 (MQ=37) ccAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAgc > 2:1228369/1‑150 (MQ=255) cAAGGAACTGGGCGTATCGCCGACGTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAgcg > 1:1863812/1‑150 (MQ=255) aaCTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGt > 2:1410418/1‑150 (MQ=255) aCTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGATCCAGGTT‑CGc > 1:415651/1‑124 (MQ=255) gCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGgtg < 2:1565846/150‑1 (MQ=255) ccGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCt < 1:2218476/118‑1 (MQ=255) ccGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCt > 2:2218476/1‑118 (MQ=255) gACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAAt > 1:1099194/1‑150 (MQ=255) ttGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACgg < 1:2216922/150‑1 (MQ=255) ggTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGcc < 2:1099194/150‑1 (MQ=255) tCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCaa < 2:990794/150‑1 (MQ=255) aaCTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATa > 2:2351138/1‑150 (MQ=255) cTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGATCCAGGTT‑CGCTCTGGCGTTTGCTTGCa > 1:620257/1‑114 (MQ=37) cTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGATCCAGGTT‑CGCTCTGGCGTTTGCTTGCa < 2:620257/114‑1 (MQ=37) cTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAAc > 2:1807953/1‑150 (MQ=255) ttCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATg > 1:497254/1‑124 (MQ=255) ttCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATg < 2:497254/124‑1 (MQ=255) ttCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACt > 2:1735474/1‑150 (MQ=255) ccGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAgcgc > 2:1084904/1‑150 (MQ=255) cgcgATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCa > 2:787656/1‑150 (MQ=255) cgcgATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCa > 1:889646/1‑150 (MQ=255) gcgATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCaa > 2:928554/1‑150 (MQ=255) gATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCaaaa < 2:863485/150‑1 (MQ=255) tGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCaaaaaa < 1:787656/150‑1 (MQ=255) gcTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑Cg < 1:1956018/78‑1 (MQ=255) gcTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑Cg > 2:1956018/1‑78 (MQ=255) gcTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgc < 2:1209150/150‑1 (MQ=255) gcTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgc > 1:802268/1‑150 (MQ=255) cTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgcc < 2:1863812/150‑1 (MQ=255) cTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgcc < 2:1705742/150‑1 (MQ=255) tGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgccg > 2:7847/1‑150 (MQ=255) tGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgccg < 1:1084904/150‑1 (MQ=255) tGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAAcgccg < 1:928554/150‑1 (MQ=255) tGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCaa < 2:1096694/150‑1 (MQ=255) tGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTATCCCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCaa < 2:1666811/150‑1 (MQ=255) ccGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATgg > 2:119447/1‑150 (MQ=255) ggCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 1:1410418/150‑1 (MQ=255) ggCCAGTCGCCAGGACTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 2:1656830/150‑1 (MQ=255) ggCCAGTCGCCACGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGCTACGCTTGCG‑ATCGACTCATAGCACTAGTATGGTGTTGTGCAAATACGGCCTATCACTCCATGGACAATAAACGCCGCAAGTTATGGTCGTTAttt < 1:2351138/150‑1 (MQ=255) gCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtg > 2:736181/1‑150 (MQ=255) ccAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt > 1:1415900/1‑150 (MQ=255) cAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAACTAGAGGTAAGAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgtg > 2:64666/1‑150 (MQ=255) aGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGa < 1:50077/150‑1 (MQ=255) aGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGa < 1:1228369/150‑1 (MQ=255) tCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGaaa < 2:802268/150‑1 (MQ=255) gCCAGGGCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAaca < 2:1569444/150‑1 (MQ=255) gCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAaca < 2:2184354/150‑1 (MQ=255) aGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAAcacca < 1:276838/150‑1 (MQ=255) gCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACcaca > 2:1743318/1‑150 (MQ=255) gCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTCGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACcaca < 1:1923468/150‑1 (MQ=255) tGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGTGCGTTATTTGTGAAACACCACACTa < 1:64666/150‑1 (MQ=255) gAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc > 1:2314347/1‑87 (MQ=255) gAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:2314347/87‑1 (MQ=255) gAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAg > 1:330870/1‑150 (MQ=255) aaGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGc < 2:1159873/150‑1 (MQ=255) gACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTa < 2:81009/143‑1 (MQ=255) gACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTa > 1:81009/1‑143 (MQ=255) aCTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTAc < 1:119447/150‑1 (MQ=255) tGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc > 1:260335/1‑78 (MQ=255) tGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGc < 2:260335/78‑1 (MQ=255) tGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACcaca > 1:688284/1‑137 (MQ=255) tGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACcaca < 2:688284/137‑1 (MQ=255) tGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGACGTGAGTTGTGAAACACCACACTAGCCCCTACGt > 2:1999659/1‑150 (MQ=255) aagcaaACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCg < 1:1683386/115‑1 (MQ=255) aagcaaACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCg > 2:1683386/1‑115 (MQ=255) aagcaaACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGATGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAg > 2:907648/1‑150 (MQ=255) agcaaACGCCAGAGCGAACCTGAAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTCCGTCAGc < 2:2048322/150‑1 (MQ=255) caaACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCtt > 1:2356466/1‑150 (MQ=255) gagagCGATCCAGGTT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGa > 2:1839563/2‑150 (MQ=255) cAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt > 2:2114479/1‑113 (MQ=255) cAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTtgt < 1:2114479/113‑1 (MQ=255) cAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGa < 1:1312918/150‑1 (MQ=255) gagCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATc < 2:353474/150‑1 (MQ=255) gagCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATc < 2:1415900/150‑1 (MQ=255) cTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt < 2:1761328/101‑1 (MQ=255) cTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTAttt > 1:1761328/1‑101 (MQ=255) cTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAAAAAcc > 2:1820850/1‑150 (MQ=255) tGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAAAAACCg > 2:288955/1‑150 (MQ=255) | TGGCGTGCCGCAGAAGGACATTGCCAAGGAACTGGGCGTATCGCCGACCTTGGTCAACTTCATGATCCGCGATGCGCTGGTGCATTGCCGCAAGACGGCCAGTCGCCAGGCCTGAAGATGACTGCAAGCAAACGCCAGAGCGAACCTGGAT‑CGCTCTCGCTTTTGCTTGCAGCGCTAGTATGGTGTTTTGCAAATACGGCCAATAACTCGCAGCGCAAAAAACGCCGCAAGTTATGGTCGTTATTTGTGAAACACCACACTAGCCCCTACGTCAGCTTGCAACGATCGAAAAACCG > NC_002947/4831956‑4832251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |