Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,839,266 | C→G | 13.8% | intergenic (+43/‑137) | ccoP‑I → / → PP_4254 | cbb3‑type cytochrome c oxidase subunit/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,839,266 | 0 | C | G | 13.8% | 157.1 / 18.0 | 58 | intergenic (+43/‑137) | ccoP‑I/PP_4254 | cbb3‑type cytochrome c oxidase subunit/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (20/30); new base G (2/6); total (22/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.97e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.03e-01 |
CCGGCGCAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGT > NC_002947/4839119‑4839404 | ccGGCGCAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGccgcccg > 2:895701/1‑150 (MQ=255) ggCGCAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCcgcg > 2:652851/1‑150 (MQ=255) gcgcAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCcgcgc < 1:652851/150‑1 (MQ=255) ggCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGC‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGgcgc < 2:458167/150‑1 (MQ=255) ccGAGATCCAGGGGAATGACATGGTGCAGGTCCGGGCGGCTTAAGTGTATAGCATGATGACGTACTGATGCTG‑TTATGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTc < 1:1252008/150‑1 (MQ=19) ccGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTc < 1:242617/150‑1 (MQ=255) agaTCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGat < 2:1060698/150‑1 (MQ=255) agaTCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGat < 2:2138317/150‑1 (MQ=255) aTCCAGGGGTCAGACAAGTGGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGAAGGA‑TGCTGGTGTTTAAGCTGGGCCGGCCAAGTGACTTCGCAGAAACCAATTTGCAGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGatat < 1:2350744/150‑1 (MQ=19) tCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATc < 2:365721/150‑1 (MQ=255) aGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGTCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGAtctcaca < 1:664055/150‑4 (MQ=38) aTGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCccacc < 1:720602/150‑1 (MQ=255) cAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGc > 2:439509/1‑140 (MQ=255) cAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGc < 1:439509/140‑1 (MQ=255) cAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATaa < 1:508860/150‑1 (MQ=255) gTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCAt < 2:1095230/150‑1 (MQ=255) ctgctgGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCAt < 2:2298180/144‑1 (MQ=255) ctgctgGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCAGAACCAt > 1:2298180/1‑144 (MQ=255) tgctgGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCt < 2:2051196/150‑1 (MQ=255) tgGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTac > 1:1519636/1‑150 (MQ=255) gcggcTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCTCCCGCGCGGCGCTCTGTATCGGCCGCACCATAAACTTCAAACCTTccac > 2:331960/1‑150 (MQ=255) gtgtATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATc > 2:268508/1‑130 (MQ=255) gtgtATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATc < 1:268508/130‑1 (MQ=255) gtgtATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGcccc < 2:1977303/150‑1 (MQ=255) gtgtATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGcccc > 2:502398/1‑150 (MQ=255) gtATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac < 1:1452807/150‑1 (MQ=255) tataGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACAccccccccccccc > 1:1850755/1‑147 (MQ=255) ataGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCTATATTCGCCCCACCAAAACCAACAAACCTTACAACcccccccccgca > 1:2021434/1‑146 (MQ=38) gCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATcc < 1:502398/150‑1 (MQ=255) ccTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCAACAAACCTTACCACCCCCCCccaccccaat > 1:1691243/1‑145 (MQ=39) gCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCAt > 1:1988607/1‑115 (MQ=255) gCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCAt < 2:1988607/115‑1 (MQ=255) cAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCaaa < 1:895701/150‑1 (MQ=255) ttCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTac > 2:751290/1‑116 (MQ=255) ttCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTac < 1:751290/116‑1 (MQ=255) ttCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTac < 1:197115/116‑1 (MQ=255) ttCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGACGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTac > 2:197115/1‑116 (MQ=255) gCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCgcggc > 2:2299303/1‑69 (MQ=255) gCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCgcggc < 1:2299303/69‑1 (MQ=255) tgtgACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGATATCGAGCGCCGCGCGGGCGGCGCTc < 2:1368312/71‑1 (MQ=25) tgtgACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGATATCGAGCGCCGCGCGGGCGGCGCTc > 1:1368312/1‑71 (MQ=25) gTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTaca < 2:1487737/89‑1 (MQ=255) gTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTaca > 1:1487737/1‑89 (MQ=255) cGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAAcc > 2:1492082/1‑73 (MQ=255) cGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAAcc < 1:1492082/73‑1 (MQ=255) gCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac < 1:574815/97‑1 (MQ=255) gCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac > 2:574815/1‑97 (MQ=255) gAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac < 2:180848/94‑1 (MQ=255) gAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCccac > 1:180848/1‑94 (MQ=255) gAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGaa < 1:2013594/150‑1 (MQ=255) gCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACaa < 1:569282/150‑1 (MQ=255) gCATTTGCCGCCGGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACaa < 2:301763/150‑1 (MQ=255) cgccTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACAccccc < 2:1572273/74‑1 (MQ=255) cgccTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACAccccc > 1:1572273/1‑74 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGccc < 1:2196060/67‑1 (MQ=255) tCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGccc > 2:2196060/1‑67 (MQ=255) gcGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGt < 2:890964/149‑1 (MQ=255) aGCGCCGCGCGGGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATc < 2:1266410/71‑1 (MQ=37) aGCGCCGCGCGGGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATc > 1:1266410/1‑71 (MQ=37) | CCGGCGCAGGCCGAGATCCAGGGGAATGACAAGGTGCACCTGCTGGCGGCTTACGTGTATAGCCTGTCGCAGGA‑TGGTTCGGCTGAGGCTGTGACGGCCAAGTGAGTTCGCCGAAAGGCATTTGCCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTCGATATCCGCCCCACCATAACCATCAAACCTTACACCCCCGCCCCACCATCCCCCTCAAACCATACCCCCACCGCCGCCCCCTTCCCTTGCACCCCCACCGAACACAACTAAGCTTGTTGCCTCAGT > NC_002947/4839119‑4839404 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |