| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,866,068 | G→T | 13.0% | R171R (CGC→CGA) | PP_4277 ← | GntR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,866,068 | 0 | G | T | 13.0% | 228.1 / 17.6 | 83 | R171R (CGC→CGA) | PP_4277 | GntR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (35/37); new base T (7/4); total (42/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
GTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGTCGAGCTGGTC > NC_002947/4865920‑4866217 | gTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGgc > 2:929340/1‑150 (MQ=255)gTCAGCCGCTGGCGAGTGCCGCCAGCACCAGTTCGCAGCTGCGCGGGGCTTAGGCGGTGAGCACCTCGCGAATGCTCGGCAGGTCACGCGGGACCACGGGTTCTAGCAAGCGGTCGAACAGGTCTAGATAGTCGATG‑TTGTTGGCCTGgc < 2:114113/150‑1 (MQ=255) cAGCCTCTGGCCAGTCCTGCCAGCACCGGATCGGAGCTGTGCTGGCCATAGGCGGTTAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCCCGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGgcgc < 2:1128694/150‑1 (MQ=255) gCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTg < 2:688303/150‑1 (MQ=255) ccTCTGGCCAGTGCCGCCAGCGCCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGTGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTgg > 2:344914/1‑150 (MQ=255) ggCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGTCGCTGGACCAg > 1:1356203/1‑150 (MQ=255) cAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCAGTGAGCACCGCGCGAATGCGCGGCAGGTCACGCCAGACCCCATACTCGAGCAAGCAGGCGAACAGGTCGAGCTAGTCGATC‑ATGTGGGTCTGGCTCTCCTCCAGccc > 2:1056216/1‑148 (MQ=255) tGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAg < 2:1197393/150‑1 (MQ=255) gcggccAGCACCAGTTCGCACCTCCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGCCCACGGCTTCGAACAAGCGGACGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAgg < 1:433627/147‑1 (MQ=255) gccgccAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAgg < 1:36967/150‑1 (MQ=255) gccgccAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGACCTGTCGCTGGACCAGCGCCAgg < 1:1593493/150‑1 (MQ=255) ccAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAAt < 2:957522/150‑1 (MQ=255) ccAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGAGGCCGAACAGGTCGACCTCCCCGATCGATG‑GGGCCTGGCGCTGGTCCAGCGACAGGTAAt > 2:1771141/1‑150 (MQ=255) cAGCACCCGTTCGCAGCTGCGCTGGCCATAGGCGGTGACCACCTCGGGCATAACCGGCAGGTCACGCGAGCCCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATA‑ATGTTGGCCTGTCGCTTGTGCAGCGagagtttatt > 2:942977/1‑144 (MQ=255) cAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATa > 2:446378/1‑150 (MQ=255) aGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAg > 2:1773/1‑150 (MQ=255) cACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGc < 2:1841250/150‑1 (MQ=255) tcatggccAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACg > 1:1623953/8‑150 (MQ=255) aGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACgg > 1:2156931/1‑150 (MQ=255) aGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCGGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATgg > 1:1929593/1‑150 (MQ=255) gcTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACCGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCt > 1:418883/1‑150 (MQ=255) tGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGc > 1:950754/1‑150 (MQ=255) tGGACATAGGCGGTGAGCAGCTCGCGAGTGCGCGGCAGGTCACGCGAGACCACGACTGCGAGCAAGCGGGCGAACAGGTCGAGATAGTGGATC‑ATGTTGGCCGGGCGATGGTCCAGCGACAGGTAATAGGCGCGGCTCATGGCCGGCTGc > 2:166512/1‑150 (MQ=255) gCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAg < 2:1052221/150‑1 (MQ=255) aTAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCgg > 2:943445/1‑141 (MQ=255) aTAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCgg < 1:943445/141‑1 (MQ=255) gCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTcc > 2:2096405/1‑150 (MQ=255) cGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCa < 2:798033/150‑1 (MQ=255) tGAGCACCTCGTGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACgg < 1:344914/150‑1 (MQ=255) aCCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTcc > 2:251201/1‑150 (MQ=255) ccTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCt < 2:418883/150‑1 (MQ=255) cTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAgg < 1:1182446/103‑1 (MQ=255) cTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAgg > 2:1182446/1‑103 (MQ=255) tCGCGAATGCGCGGCAGGTCACGCGAGGCCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGACCTGTCGCTGGACCAGCgcca > 2:1293648/1‑97 (MQ=255) tCGCGAATGCGCGGCAGGTCACGCGAGGCCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGACCTGTCGCTGGACCAGCGCCa < 1:1293648/100‑1 (MQ=255) tCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGGGG‑GTGAACACCCAGAGAATCTCTACCAATAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTATTCCGCTGGTGCCTGc > 1:782028/1‑150 (MQ=255) cgcgAATGCGCGGCAGGTCACGCGAGACCACGGCGTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCa < 1:2312290/150‑1 (MQ=255) aTGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAAc < 1:446378/150‑1 (MQ=255) tGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGTCGCTGGACCAGCgcca > 2:1310089/1‑90 (MQ=255) tGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGTCGCTGGACCAGCGCCa < 1:1310089/93‑1 (MQ=255) gcgcGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACgg < 1:242540/150‑1 (MQ=255) cgcgGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACggg < 1:708815/150‑1 (MQ=255) cgcgGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACggg < 1:1773/150‑1 (MQ=255) cgcgGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACggg < 1:88452/150‑1 (MQ=255) gTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGc < 1:553308/150‑1 (MQ=255) tCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATa < 2:460586/89‑1 (MQ=255) tCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATa > 1:460586/1‑89 (MQ=255) cACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGGCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTGTACTACGGTTTCCTGCAGGAACGGGTTGTCGGCGa < 1:1771141/150‑1 (MQ=255) cgAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATCTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACgg > 1:173288/1‑150 (MQ=255) gagaCCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGAACGGCTCATGGCCGGCTGCAGGTTTAGATCTGGGTCGTGCAGGAACGGGTTGTCGGCGAACGGa > 2:194809/1‑150 (MQ=255) cACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATg > 1:1074223/1‑91 (MQ=255) cACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATg < 2:1074223/91‑1 (MQ=255) aCGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGt < 2:1893183/73‑1 (MQ=255) aCGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGt > 1:1893183/1‑73 (MQ=255) aCGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAg < 2:335731/147‑1 (MQ=255) aCGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAg > 1:335731/1‑147 (MQ=255) aCGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGcc < 1:2096405/150‑1 (MQ=255) aCGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGcc > 2:107396/1‑150 (MQ=255) cTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCcgcac < 2:908421/150‑1 (MQ=255) cTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCcgcac < 2:1314411/150‑1 (MQ=255) ttCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCcgcacg > 1:181997/1‑150 (MQ=255) ttCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCcgcacg > 1:2079343/1‑150 (MQ=255) gAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCAt > 1:124237/1‑150 (MQ=255) cAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGAc < 2:1536484/150‑1 (MQ=255) aCAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGt > 2:1334386/1‑150 (MQ=255) gTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCGAAACTGTCGGc > 1:822786/1‑150 (MQ=255) gagaTAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCAc > 1:867376/1‑81 (MQ=255) gagaTAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCAc < 2:867376/81‑1 (MQ=255) aTAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGaa > 2:2073664/1‑150 (MQ=255) aGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAgg > 2:2074704/1‑150 (MQ=255) gTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTc < 2:1659684/99‑1 (MQ=255) gTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTc > 1:1659684/1‑99 (MQ=255) tCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTc > 1:2328535/1‑150 (MQ=255) gATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACgg > 2:378696/1‑90 (MQ=255) gATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACgg < 1:378696/90‑1 (MQ=255) gATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCtt < 1:251201/150‑1 (MQ=255) gATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCCAAAAACTGTGGGCGAGGAATGTcgt > 2:1342942/1‑148 (MQ=255) tC‑ATGTTTGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGTATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGa < 1:929340/150‑1 (MQ=255) c‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGAt < 2:2156931/150‑1 (MQ=255) ctattaccTGTCGCTGGACCAGCGCCAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGt > 1:408083/7‑150 (MQ=255) ctattaccTGTCGCTGGACCAGCGCCAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGt > 1:1692857/7‑150 (MQ=255) gTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCCGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGTc < 1:976929/150‑1 (MQ=255) gCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGTCGAGc < 2:124237/150‑1 (MQ=255) cTGTCGCTGGACCAGCGCCAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGTCGAGCTg < 2:1692857/150‑1 (MQ=255) cTGTCGCTGGACCAGCGCCAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGTCGAGCTg > 2:1961614/1‑150 (MQ=255) tGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGTCGAGCTgg < 2:1929593/150‑1 (MQ=255) gcgcTGGTCCAGCGACAGGTAATAGGAACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCACAAAGCTGTCGGCGACGAAGGTCTTGATGTCGAGCTGGTc < 1:194809/150‑1 (MQ=255) | GTCAGCCTCTGGCCAGTGCCGCCAGCACCAGTTCGCAGCTGCGCTGGCCATAGGCGGTGAGCACCTCGCGAATGCGCGGCAGGTCACGCGAGACCACGGCTTCGAGCAAGCGGGCGAACAGGTCGAGATAGTCGATC‑ATGTTGGCCTGGCGCTGGTCCAGCGACAGGTAATAGGCACGGCTCATGGCCGGCTGCAGGTTTTCCACGGTTTCCTGCAGGAACGGGTTGTCGGCGAACGGATAGGCCGCACGCATGACCGCAAAACTGTCGGCGACGAAGGTCTTGATGTCGAGCTGGTC > NC_002947/4865920‑4866217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |