| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,930,187 | G→C | 9.1% | L10L (CTC→CTG) | cheA ← | chemotaxis histidine kinase CheA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,930,187 | 0 | G | C | 9.1% | 271.5 / 15.0 | 88 | L10L (CTC→CTG) | cheA | chemotaxis histidine kinase CheA |
| Reads supporting (aligned to +/- strand): ref base G (39/41); new base C (3/5); total (42/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01 | |||||||||||
AGCTGAAGGAAGCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCTTCACCCCGAGTCGGATGTTT > NC_002947/4930038‑4930336 | aGCTGAAGGAAGCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCTGCCTCTACCAGGAAATCCTgg > 1:797181/1‑150 (MQ=255) gCTGAAGGAAGCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTgga < 1:1582686/150‑1 (MQ=255) cTGAAGGAAGCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTggag < 1:821166/150‑1 (MQ=255) gaaggaagCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTggagga < 2:1177279/150‑1 (MQ=255) ggaagCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGAttt > 2:295201/1‑150 (MQ=255) ggaagCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTCCAGGAttt > 1:1414040/1‑150 (MQ=255) gaagCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATttc > 2:257570/1‑150 (MQ=255) gaagCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATttc < 1:618094/150‑1 (MQ=255) agCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTCCAGGATttcct < 2:151794/150‑3 (MQ=255) gCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTCCAGGATttcctg < 2:1414040/150‑4 (MQ=255) gCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTCCAGGATttcctg < 2:930952/150‑4 (MQ=255) ccGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTggagga > 2:444737/1‑142 (MQ=255) ccGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTggagga < 1:444737/142‑1 (MQ=255) ggCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATc < 1:2359181/150‑1 (MQ=255) ggCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATc < 2:1032480/150‑1 (MQ=255) gcCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGgc < 2:1307800/150‑1 (MQ=255) ccccTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTCCAGGATttcct < 1:1607073/141‑3 (MQ=255) ccccTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTCCAGGATttcct > 2:1607073/1‑139 (MQ=255) ccTTTTACAGTGTGGCAACCGCGAAAGATCGCATTGAGCAGGGCGGCGTCGTCAGGGCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCg > 2:399747/1‑150 (MQ=255) ccTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCg > 2:978763/1‑150 (MQ=255) tgGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCaaa < 1:1763982/150‑1 (MQ=255) ggAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAAc < 1:1695219/150‑1 (MQ=255) aaaCCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGAttt < 2:121589/121‑1 (MQ=255) aaaCCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGAttt > 1:121589/1‑121 (MQ=255) aCCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGATCTATCCGCACCTCTGCCTCTACCAGGAAATCCTGGCGGTTCTTTTCCCCCGCCTTCAACCTCATCAAACGTGc > 1:655976/1‑150 (MQ=255) cgctAAATATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTc < 1:500011/150‑1 (MQ=255) gcgAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTcc > 2:1048135/1‑150 (MQ=255) aaGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCTGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTaa < 2:797181/150‑1 (MQ=255) tCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAAc > 2:770908/1‑135 (MQ=255) tCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAAc < 1:770908/135‑1 (MQ=255) tCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAAc > 1:886562/1‑150 (MQ=255) cATTGAGCAGGTCGGCATCGTCATGTCGGCTTTCCAGCTCGACCAGTTTCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCaa < 1:181319/150‑1 (MQ=255) aTTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCtcat > 1:2017181/1‑126 (MQ=255) aTTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCtcat < 2:2017181/126‑1 (MQ=255) tGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCacttc < 1:1667538/150‑5 (MQ=255) gAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCt < 2:158959/150‑1 (MQ=255) gAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTAAAGTATTTGGGCGGCCTCTACCAGGAAATCCTGGAGTATTTCTGCATCGGCTCCGAATCTCATCAAACGTGCTCCTTAAAAACCGAGGCt < 2:882213/150‑1 (MQ=255) gAGCAGGTCGGCACCGTCAGGTCGGCTTTCCAGCTCCACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTTTACCATGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCt < 2:1332346/150‑1 (MQ=255) gTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGAcag < 1:334762/150‑1 (MQ=255) cGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGAcagca < 2:911861/150‑1 (MQ=255) gCATCGTCAGGTCGGCTTTCCAGCTCGACCGGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCGCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGa > 1:1818100/1‑150 (MQ=255) gTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGatcatc < 1:207469/150‑1 (MQ=255) cAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGa < 1:978763/150‑1 (MQ=255) tCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATc > 2:1427516/1‑150 (MQ=255) gCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTc < 1:415885/150‑1 (MQ=255) gCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTc < 2:798302/150‑1 (MQ=255) gCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTc < 1:257570/150‑1 (MQ=255) gCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTc < 1:1048135/150‑1 (MQ=255) tttCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCt > 1:1989538/1‑150 (MQ=255) cAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGAcc > 2:2400487/1‑150 (MQ=255) gCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCgg > 2:2250794/1‑150 (MQ=255) cGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGaca < 2:1989538/150‑1 (MQ=255) ccAGTTGCTCGGACAATTGCTCAAGTAGGTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTAATCAAACGTGCTTCCTCGCAACCACGCAGTGCCACCAGAACATCGACATCGTCCTGACCGGACacga > 2:530275/1‑150 (MQ=255) aGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCAGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGa < 1:512155/120‑1 (MQ=255) aGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCAGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGa > 2:512155/1‑120 (MQ=255) gTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGacac > 1:503515/1‑145 (MQ=255) gTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGacac < 2:503515/145‑1 (MQ=255) gTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGt > 2:1048454/1‑150 (MQ=255) tCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCGAACGTGCTCCTTAAAAACCAAGGCTGGa > 2:1205487/1‑107 (MQ=255) tCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCGAACGTGCTCCTTAAAAACCAAGGCTGGa < 1:1205487/107‑1 (MQ=255) tCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGCCTGGAGAGAAGATGATCGACATCGTCCTGACCGGACACGACGTCTTCa > 2:1004082/1‑150 (MQ=255) aaTTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTa > 1:509780/1‑150 (MQ=255) tGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTGATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCg < 1:2357865/150‑1 (MQ=255) tGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCg < 1:2250794/150‑1 (MQ=255) tCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCTGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCa > 2:946745/1‑150 (MQ=255) tCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCa > 1:672565/1‑150 (MQ=255) cAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCAt < 1:1427516/150‑1 (MQ=255) aaGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGAt > 1:2173234/1‑39 (MQ=255) aaGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGAt < 2:2173234/39‑1 (MQ=255) gTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAAc < 2:1094896/81‑1 (MQ=255) gTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAAc > 1:1094896/1‑81 (MQ=255) gTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGaa > 1:836663/1‑150 (MQ=255) tttCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCt > 2:2298461/1‑150 (MQ=255) cGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCg < 1:1048454/150‑1 (MQ=255) gCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTg > 2:2295937/1‑78 (MQ=255) gCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTg < 1:2295937/78‑1 (MQ=255) ccTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCtt > 1:1425565/1‑150 (MQ=255) tctACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTg < 1:1324962/75‑1 (MQ=255) tctACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTg > 2:1324962/1‑75 (MQ=255) tACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCa < 2:1366381/118‑1 (MQ=255) tACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCa > 1:1366381/1‑118 (MQ=255) ccAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCTTCAcccc > 1:2268143/1‑150 (MQ=255) cAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGc > 2:1157747/1‑126 (MQ=255) cAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGc < 1:1157747/126‑1 (MQ=255) cAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCTTCACCCCg > 1:2394840/1‑150 (MQ=255) cAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCTTCACCCCg > 1:2267429/1‑150 (MQ=255) ggAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAAt < 1:1711715/130‑1 (MQ=255) ggAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAAt > 2:1711715/1‑130 (MQ=255) agAAATCCTCCAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTc < 2:1970040/90‑1 (MQ=255) agAAATCCTCCAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTc > 1:1970040/2‑91 (MQ=255) ccTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCTTCACCCCGAGTCGGAt < 2:886562/150‑1 (MQ=255) tGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCt < 2:737594/102‑1 (MQ=255) tGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCt > 1:737594/1‑102 (MQ=255) tGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCTTCACCCCGAGTCGGATGt > 1:2042903/1‑150 (MQ=255) gaggaTTTCTTCATCGGCGCCGAAGCTCATCAAACGTTTTTCTTAAAAACCAAGGCTAGACCGCAGATCATCGACATCGTCCTGACCGGACACGCGGTCTTCACCCTTTTCGGCTTGAATCTGCGCACCTTCACCGCTAGTCGGATGttt < 2:531898/150‑1 (MQ=255) gaggaTTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAgg < 1:2377342/55‑1 (MQ=255) gaggaTTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAgg > 2:2377342/1‑55 (MQ=255) | AGCTGAAGGAAGCCGGCGCCCCCTTTTACAGTGTGGAAACCGCGAAAGATCGCATTGAGCAGGTCGGCATCGTCAGGTCGGCTTTCCAGCTCGACCAGTTGCTCGGACAATTGCTCAAGTATTTCGCCGGCCTCTACCAGGAAATCCTGGAGGATTTCTTCATCGGCGCCGAAGCTCATCAAACGTGCTCCTTAAAAACCAAGGCTGGACAGCAGATCATCGACATCGTCCTGACCGGACACGACGTCTTCACGCTTATCGGCATGAATCTGCGGACCTTCACCCCGAGTCGGATGTTT > NC_002947/4930038‑4930336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |