| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,945,056 | C→T | 6.1% | intergenic (+371/+427) | PP_5673 → / ← flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,945,056 | 0 | C | T | 6.1% | 230.5 / 2.6 | 80 | intergenic (+371/+427) | PP_5673/flhB | D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein |
| Reads supporting (aligned to +/- strand): ref base C (38/36); new base T (2/3); total (40/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.75e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTG > NC_002947/4944909‑4945201 | gCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCg < 2:1506830/150‑1 (MQ=39)gCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCg < 1:2047419/150‑1 (MQ=39) gTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGc > 1:1533146/1‑150 (MQ=39) gTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGc < 1:908908/150‑1 (MQ=38) cacaGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGGGCTCGGccggg > 1:1437152/1‑146 (MQ=255) cacaGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGGGCTCGGCCggg < 2:1437152/149‑1 (MQ=255) acaGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGgtt > 1:753209/1‑150 (MQ=38) acaGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGgtt > 2:1510107/1‑150 (MQ=39) gACGAGCAGCACCAGGATCGACAGGGCGATCTAGAAGGTGAAAAACACGTGGAGCCGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAGCAGTGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGgttgtt < 2:802287/150‑1 (MQ=11) aCCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGttgttg > 1:1510583/1‑150 (MQ=39) ccAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGc > 1:1630528/1‑150 (MQ=39) cagcagCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCg < 2:753209/150‑1 (MQ=39) cagcagCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCg < 2:717339/150‑1 (MQ=39) agcagcACCTCGATCGACAGCGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAAGATCATCATTTTCAACATCGCCAGCAGTAACAGCGGCACACCCAGGTTGCCCCCGCCTAGCCCGGCCAGGTTGTTGCgg < 1:893428/150‑1 (MQ=11) agcagcACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCgg < 1:1510107/150‑1 (MQ=38) cacGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCt > 2:779042/1‑150 (MQ=39) cacGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGCCGGTATCGGCAACATCATCATGGCCGACATCCCCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCt > 2:686495/1‑150 (MQ=255) gATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGAt < 2:289407/150‑1 (MQ=38) aTCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGAtt > 1:1212432/1‑150 (MQ=37) gACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAAc > 2:1999921/1‑150 (MQ=39) aGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACGAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGa < 1:1364125/150‑1 (MQ=37) aGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGa < 2:1533146/150‑1 (MQ=38) aTGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGa < 2:1630528/150‑1 (MQ=39) aTGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGa < 1:1385016/150‑1 (MQ=39) gAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCAc > 1:401466/1‑150 (MQ=38) tGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGa < 2:1182299/150‑1 (MQ=34) gaaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTcc > 2:875725/1‑150 (MQ=35) gaaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTcc > 1:1102569/1‑150 (MQ=35) gaaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCAGCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTcc > 1:801094/1‑150 (MQ=25) aaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGa < 1:996374/121‑1 (MQ=37) aaCACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGa > 2:996374/1‑121 (MQ=37) cacGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCAAGCGCCCCGAGGTTGTTGTGGGTGTTGCTGATTAACTGAGTGCGATGCACCGCGAGTCctct < 2:84022/150‑1 (MQ=11) gAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAg < 1:1655800/93‑1 (MQ=39) gAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAg > 2:1655800/1‑93 (MQ=39) aGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCAc < 1:114681/128‑1 (MQ=37) aGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCAc > 2:114681/1‑128 (MQ=37) aaCGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACtt < 2:1102569/150‑1 (MQ=34) ggTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGc > 2:1039313/1‑150 (MQ=35) ggCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTg > 2:2387048/1‑105 (MQ=38) ggCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTg < 1:2387048/105‑1 (MQ=38) gaaaCATAATCATTGCCAACAGCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAgggg > 2:643118/3‑150 (MQ=19) atcatTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGc > 2:992634/1‑150 (MQ=37) tcatTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGGCTGCg > 1:1548029/1‑150 (MQ=37) atTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGAt < 1:368202/83‑1 (MQ=39) atTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGAt > 2:368202/1‑83 (MQ=40) atTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGc > 1:2271978/1‑150 (MQ=39) ttGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCt < 1:875725/150‑1 (MQ=39) aCATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCAtt < 2:1510583/150‑1 (MQ=255) cATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCct < 2:1899740/103‑1 (MQ=38) cATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGGCct > 1:1899740/1‑103 (MQ=38) aTCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTGTTGATGCAAAACTTTGACGCACCGGGGGCGCCTGCGGCTGGCATTGc > 2:183367/1‑150 (MQ=255) aTCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGc < 2:2271978/150‑1 (MQ=255) cACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTa < 2:401466/150‑1 (MQ=255) aCCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAg < 1:1534874/150‑1 (MQ=255) aCCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAg > 1:2141009/1‑150 (MQ=255) ccAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGa > 1:1862565/1‑150 (MQ=255) gTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCttt < 2:801094/150‑1 (MQ=255) cAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCaa < 1:1039313/150‑1 (MQ=255) aGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAAc > 1:2064535/1‑150 (MQ=255) aGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAAc > 1:2279748/1‑150 (MQ=255) gCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGAGTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACt > 2:2095897/1‑150 (MQ=255) ggCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACttt < 1:779042/150‑1 (MQ=255) gCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTtg < 2:2141009/150‑1 (MQ=255) cacaCCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGCGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTtgt < 1:802741/150‑1 (MQ=255) cccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATc > 2:2080111/1‑150 (MQ=255) ccAGGTTGCCCCGGCCGAGCTTGGCCAGGTTGTTGCGGGCGTTGCTTATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGGAAAACTATGACGCCCAGGGGGCGCCGGCGGCTGGCATTGCTAGAAGCTTCCCAACTTTGTGATct < 2:1548029/150‑1 (MQ=14) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATct > 2:1635392/1‑150 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATct > 1:1628414/1‑150 (MQ=255) ccAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATct > 1:1464839/1‑150 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGaa < 1:1245709/121‑1 (MQ=255) cccGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGaa > 2:1245709/1‑121 (MQ=255) ctggCCGGGCTCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTtgt > 1:1186861/3‑135 (MQ=255) ctggCCGGGCTCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTtgt < 2:1186861/133‑1 (MQ=255) ggCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCgg < 2:1628414/150‑1 (MQ=255) gCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCggg < 2:1862565/150‑1 (MQ=255) cGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCt < 2:325956/102‑1 (MQ=35) cGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCt > 1:325956/1‑102 (MQ=35) gAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGgtg > 1:361816/1‑150 (MQ=255) gCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGc > 2:1735144/1‑107 (MQ=255) gCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGc < 1:1735144/107‑1 (MQ=255) | GCGTATACACAGACCAGCAGCACCACGATCGACAGGGCGATGTTGAAGGTGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCCAACATCACCAGCAGTAACAGCGGCACACCCAGGTTGCCCCGGCCGAGCCCGGCCAGGTTGTTGCGGGCGTTGCTGATTAACTGAGTGCGATCCACCGCGAGTCCTCTTGATGCAAAACTTTGACGCCCAGGGGGCGCCTGCGGCTGGCATTGCTAGAAGCTTTCCAACTTTGTGATCTGCTGTGAATCGGGGTG > NC_002947/4944909‑4945201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |