| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,173,292 | T→C | 9.6% | intergenic (‑285/+47) | fadD‑I ← / ← fadD‑II | long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,173,292 | 0 | T | C | 9.6% | 336.9 / 19.3 | 122 | intergenic (‑285/+47) | fadD‑I/fadD‑II | long‑chain‑fatty acid‑‑CoA ligase/long‑chain‑fatty acid‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base T (53/57); new base C (6/6); total (59/63) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.03e-01 | |||||||||||
Only 100 of 126 total aligned reads displayed.
AGAGGCCAAAACAGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGTAGCCGGTGAAG > NC_002947/5173144‑5173441 | agagGCCAAAACAGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTGTAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACAtt < 2:2277932/150‑1 (MQ=255) gagGCCAAAACAGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTg > 2:1383201/1‑150 (MQ=255) cAAAACAGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑g > 1:1776811/1‑150 (MQ=255) cAAAACAGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑g > 1:2049439/1‑150 (MQ=255) aaaaCAGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gt < 2:1776811/150‑1 (MQ=255) aGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAgg > 1:1909004/1‑150 (MQ=255) ggCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGa < 1:609142/150‑1 (MQ=255) ccTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCTCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGc < 1:1946156/150‑1 (MQ=255) ccTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGc < 2:699128/150‑1 (MQ=255) ttATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCgg < 1:220859/150‑1 (MQ=255) ttATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACACTG‑CCCA‑ATGTAGGAGCgg < 2:46903/150‑1 (MQ=38) ttATGGGCAAAAAAATGAATAAATGAACAATACATGGCATTTTTAGAGTAATTAGCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGATCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCgg < 1:1218961/150‑1 (MQ=255) tGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGtt < 2:1681717/150‑1 (MQ=255) gTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTa < 2:1465973/150‑1 (MQ=255) acaAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCa > 2:743729/1‑130 (MQ=255) aaaaaTGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gtg < 1:211860/131‑1 (MQ=255) aaaaaTGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gtg > 2:211860/1‑131 (MQ=255) aaaaaTGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCcgc > 1:1836990/1‑150 (MQ=255) aaaaaTGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCcgc > 1:2153479/1‑150 (MQ=255) gACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCgaagaa < 1:684983/150‑1 (MQ=255) tCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCgg < 1:1802756/131‑1 (MQ=255) tCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCgg > 2:1802756/1‑131 (MQ=255) aaTGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gtg < 2:612017/120‑1 (MQ=255) aaTGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gtg > 1:612017/1‑120 (MQ=255) aaTGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCAt > 1:2071374/1‑150 (MQ=255) aTGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATc > 2:2111595/1‑150 (MQ=255) tGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATcc < 2:2049439/150‑1 (MQ=255) aaCAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCg > 1:708883/1‑150 (MQ=255) tACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACACTG‑CCCA‑ATGTAGGAGCgg > 1:318088/1‑120 (MQ=38) aGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAg > 2:2367341/1‑111 (MQ=255) ggTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTg‑g > 1:1526796/1‑101 (MQ=255) ggTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTg‑g < 2:1526796/101‑1 (MQ=255) ttttAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATc < 1:265185/150‑1 (MQ=255) agagTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCgcgc < 1:738972/150‑1 (MQ=255) aTTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCgaagaa < 1:139957/116‑1 (MQ=255) ttATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACACTG‑CCCA‑ATGTAGGAGCgg > 2:1333373/1‑99 (MQ=25) ttATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACACTG‑CCCA‑ATGTAGGAGCgg < 1:1333373/99‑1 (MQ=25) tCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAg < 1:609685/90‑1 (MQ=255) tCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAg > 2:609685/1‑90 (MQ=255) cAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCcgccgc > 2:898183/1‑150 (MQ=255) cAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCcgccgc > 1:1753454/1‑150 (MQ=255) cAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGAAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCcgccgc > 2:540832/1‑150 (MQ=255) aaaaTGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCa < 1:60014/81‑1 (MQ=255) aaaaTGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCa > 2:60014/1‑81 (MQ=255) aaaaTGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gt > 2:752435/1‑83 (MQ=255) aaaaTGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gt < 1:752435/83‑1 (MQ=255) aaaaTGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCa > 2:400408/1‑150 (MQ=255) gCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTg > 1:1864570/1‑150 (MQ=255) aGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGGTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGcc > 1:532782/1‑150 (MQ=255) gATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGccc > 1:1161185/1‑150 (MQ=255) aTAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCgaagaa > 2:235671/1‑97 (MQ=255) aTAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCgaagaa < 1:235671/97‑1 (MQ=255) ggCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTACACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGCAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCgg > 1:560699/1‑150 (MQ=255) ggCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gtg < 2:2047196/68‑1 (MQ=255) ggCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑gtg > 1:2047196/1‑68 (MQ=255) gCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGc > 1:857956/1‑150 (MQ=255) cTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCTGCGAAGAAGACATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCTACCGGCg > 1:218446/1‑150 (MQ=255) taGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATg < 2:857956/150‑1 (MQ=255) taGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATg > 1:456265/1‑150 (MQ=255) gagCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAg > 2:785781/1‑62 (MQ=255) gagCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAg < 1:785781/62‑1 (MQ=255) gagCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGc < 1:1897034/66‑1 (MQ=255) ccTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCaa < 2:2153479/150‑1 (MQ=255) ttAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGAt > 1:96669/1‑150 (MQ=255) ttAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCATGGTGGTCATCTCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGAt > 1:1497651/1‑150 (MQ=39) tAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATCTCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGAtt < 2:701757/150‑1 (MQ=255) cGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTg > 2:1187944/1‑120 (MQ=255) ggTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCgca < 2:1161185/150‑1 (MQ=255) gTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCaa > 1:825193/1‑138 (MQ=255) gTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCaa < 2:825193/138‑1 (MQ=255) aGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGCTAAGAAGCCGCGCAGCACGa < 2:1909004/150‑1 (MQ=39) ggCATTCGCGGGTAAACCCGCTCCTATCTTGAGGCATTTGTCGG‑GCATG‑CGACCCGTTAAGAAGCCATCCCGGTCTCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGAt < 1:540832/150‑1 (MQ=255) ggCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGAt < 2:1836990/150‑1 (MQ=255) ggCATTCGCGGGTAAACCCGCTCCTACATTG‑GGAC‑GTGTATGAGCTGTTTTTCCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGAt < 2:2071374/150‑1 (MQ=255) cgcgGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCtt < 2:623751/150‑1 (MQ=255) gggTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTggg > 2:1093144/1‑150 (MQ=255) tAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTAc < 2:708883/150‑1 (MQ=255) aaaCCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACt < 1:400408/150‑1 (MQ=255) cccGCTCCTACACTG‑CCCA‑ATGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCaaaa < 2:892451/91‑1 (MQ=21) cccGCTCCTACACTG‑CCCA‑ATGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTg > 1:1087559/1‑150 (MQ=38) cccGCTCCTACACTG‑CCCA‑ATGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTg > 1:1079239/1‑150 (MQ=38) cccGCTCCTACACTG‑CCCA‑ATGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAAATCCCGCCGCacaa > 1:892451/1‑91 (MQ=18) ccGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGc > 1:1634596/1‑96 (MQ=255) ccGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACtt < 2:1225911/147‑1 (MQ=255) ccGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACtt > 1:1225911/1‑147 (MQ=255) ccGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTg > 2:547936/1‑149 (MQ=255) ccGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTg < 1:547936/149‑1 (MQ=255) ccGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGt < 1:898183/150‑1 (MQ=255) ccGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGGTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGt > 1:1313491/1‑150 (MQ=255) ccGCTCCTACACTG‑CCCA‑ATGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACtt < 2:1404078/147‑1 (MQ=38) ccGCTCCTACACTG‑CCCA‑ATGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACtt > 1:1404078/1‑147 (MQ=38) cGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGTa < 1:2111595/150‑1 (MQ=255) gCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAAATCAAGTATGAGGATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGTAg > 2:1399012/1‑150 (MQ=255) ccTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGTAGCCg < 1:2360071/150‑1 (MQ=255) tACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCtt > 2:700253/1‑87 (MQ=255) tACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCtt < 1:700253/87‑1 (MQ=255) aTTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGAt > 1:1169313/1‑123 (MQ=255) aTTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGAt < 2:1169313/123‑1 (MQ=255) ttG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAAc > 2:1545148/1‑105 (MQ=255) ttG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGTAGCCGGTGAAg > 2:2255915/1‑150 (MQ=255) | AGAGGCCAAAACAGGCCTTATGGTCACAAAAATGACTCAATGAACAATACAGGTCATTTTTAGAGTAATTATCCAAAATGTCGCAGATAAGGCTGTATAGAGCCTGTTAGAGCGGTTTAAGGCATTCGCGGGTAAACCCGCTCCTACATTG‑GGCA‑GTGTAGGAGCGGGTTTACCCGCGAAGAAGCCATCCCGGTATCACGCTATATCGCGCAACTCCCGCCGCAAAATCTTGCCCACCGGCGTCATGGGCAACGATTCGCGCAGCACGATGTGCTTGGGTACTTTGTAGCCGGTGAAG > NC_002947/5173144‑5173441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |