| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,212,552 | T→C | 6.6% | intergenic (+68/+26) | PP_4593 → / ← PP_4594 | hypothetical protein/cystathionine gamma‑synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,212,552 | 0 | T | C | 6.6% | 281.8 / 4.8 | 98 | intergenic (+68/+26) | PP_4593/PP_4594 | hypothetical protein/cystathionine gamma‑synthase |
| Reads supporting (aligned to +/- strand): ref base T (48/43); new base C (4/3); total (52/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 102 total aligned reads displayed.
GAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTGGG > NC_002947/5212404‑5212701 | taaGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAACAACGCTCCTAC‑ACCGTCGTAGGAGCGGGtt < 1:1643824/149‑1 (MQ=255) aGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTa > 2:1643824/1‑150 (MQ=255) gCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTAc < 1:1868950/150‑1 (MQ=255) ccGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTAcc < 1:1669475/150‑1 (MQ=255) cGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTAccc > 1:1883467/1‑150 (MQ=255) ccGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGaaa > 1:1431502/1‑150 (MQ=255) gCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAgg > 2:188809/1‑150 (MQ=255) ggAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAACCCGCTCCTACGACGGT‑GTAGGAGCGGGCTTGccc < 1:1264886/132‑1 (MQ=37) gAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGccc > 2:7109/1‑150 (MQ=255) gAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGccc < 1:934898/150‑1 (MQ=255) aGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTca < 1:1707240/150‑1 (MQ=255) aGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTca > 2:1707240/1‑150 (MQ=255) gTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTcaca > 2:2162988/1‑150 (MQ=255) ttGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGACTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTcacac > 2:1735319/1‑150 (MQ=255) cTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGc < 1:2162988/150‑1 (MQ=255) cTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGc > 1:1521848/1‑150 (MQ=255) tGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAgg > 1:1699246/1‑129 (MQ=255) tGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAgg < 2:1699246/129‑1 (MQ=255) cAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTACTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCa < 1:849695/150‑1 (MQ=255) ggACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAgcg > 2:424120/1‑150 (MQ=255) gACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAgcgc < 2:1431502/150‑1 (MQ=255) gACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAgcgc < 1:7109/150‑1 (MQ=255) cAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCtt < 1:424120/150‑1 (MQ=255) aTCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGCCAAGCCCGCCCCTAC‑ACCCTCGTAGCAGCCGGCCTCCCCCCCAACCCGCCCGCGCCCCTCACACCCCGACCACCGCtacctc > 2:2177333/1‑145 (MQ=255) gAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGc > 2:2173373/1‑150 (MQ=255) ggATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAACCCGCTCCTAC‑GACGGTGTAGGAGCGGGCTTGCCCGCGaa > 1:357764/1‑105 (MQ=21) ggATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAACCCGCTCCTAC‑GACGGTGTAGGAGCGGGCTTGCCCGCGaa < 2:357764/105‑1 (MQ=21) aTCATTCAGCCGCCCAAATCCTGACAGGCATCTATTGATTCCACCGGCCTCGTCGCGGGCACGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATc < 1:2380256/150‑1 (MQ=255) ttcatCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAggg < 2:1063021/103‑1 (MQ=255) ttcatCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAggg > 1:1063021/1‑103 (MQ=255) atCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTcc > 1:1335626/1‑150 (MQ=255) tCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACCCAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCt > 1:1219211/1‑150 (MQ=255) cccAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGAc > 1:2174773/1‑150 (MQ=255) ccAAATCCTGACAGGCATCTATTGAATACACCGGCCTCTTCGCGTGCAAGCCTGCTCCTAA‑ACTACCTTAGTAGCGGGTTTACCCGCAAAAGGGCCCGCGGCCCTCCCACAGGGACCAGCGCCTTCAACGCCCCATCCAGGTCCTCGAcc > 2:292160/1‑150 (MQ=255) cAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAgg > 2:1339537/1‑140 (MQ=255) cAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAgg < 1:1339537/140‑1 (MQ=255) tGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAgc < 2:1737409/112‑1 (MQ=255) tGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAgc > 1:1737409/1‑112 (MQ=255) aGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTaa > 1:2284135/1‑150 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGGCACGCACGCTCCTAC‑ACCGCCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGc < 2:1350925/99‑1 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGc > 1:1350925/1‑99 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATc < 2:1219211/150‑1 (MQ=255) gCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACAAAGAGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATc > 1:150042/1‑150 (MQ=255) aTCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTGC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCt > 2:1746276/1‑150 (MQ=255) ttGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCa > 1:1831057/1‑97 (MQ=255) ttGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCa < 2:1831057/97‑1 (MQ=255) ttGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATc < 2:1521848/150‑1 (MQ=255) ttGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATc > 2:1024047/1‑150 (MQ=255) aaTCCACCGGCCTCTTCTCTGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGAc < 2:2373834/92‑1 (MQ=255) aaTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGAc > 1:2373834/1‑92 (MQ=255) aTCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTa < 1:671895/150‑1 (MQ=255) tCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTCACCTCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTAc < 1:636222/150‑1 (MQ=255) tCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTAc < 1:1746276/150‑1 (MQ=255) ccACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCTACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTAcc < 2:2019753/150‑1 (MQ=255) ccACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTAcc < 2:150042/150‑1 (MQ=255) cACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAg < 1:1993862/91‑1 (MQ=255) cACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAg > 2:1993862/1‑91 (MQ=255) aCCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGc > 1:1058192/1‑102 (MQ=255) aCCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGc < 2:1058192/102‑1 (MQ=255) cGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACa > 2:1668643/1‑150 (MQ=255) ggCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACaa < 2:2284135/150‑1 (MQ=255) ccTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAAcc > 2:1821799/1‑150 (MQ=255) ttCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCgcag > 2:71221/1‑150 (MQ=255) ttCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGCTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCgcag > 2:763814/1‑150 (MQ=255) gcgGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGcagcag > 2:2262784/1‑150 (MQ=255) gggCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTcc < 1:631934/101‑1 (MQ=255) gggCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTcc > 2:631934/1‑101 (MQ=255) gCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGc < 1:1735319/150‑1 (MQ=255) acccGCTCCTACGACGGT‑GTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAg < 2:1041991/102‑1 (MQ=38) acccGCTCCTACGACGGT‑GTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAg > 1:1041991/2‑103 (MQ=38) cccGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACaa > 2:616166/1‑132 (MQ=255) cccGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACaa < 1:616166/132‑1 (MQ=255) cccGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCt < 2:1883467/150‑1 (MQ=255) gCTCCTAC‑GACGGTGTAGGAGCGGGCTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTAc < 1:1109220/123‑1 (MQ=38) gCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGcc > 2:1450587/1‑50 (MQ=255) gCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGcc < 1:1450587/50‑1 (MQ=255) tCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATcc < 1:1239345/150‑1 (MQ=255) cTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAATGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATcccc > 1:1145430/1‑150 (MQ=255) tAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGt > 1:1538851/1‑84 (MQ=255) tAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGt < 2:1538851/84‑1 (MQ=255) tAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTTGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCa > 1:1743168/1‑150 (MQ=255) c‑acCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATc > 2:544970/1‑150 (MQ=255) cgtcgtAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGa < 1:261992/106‑1 (MQ=255) cgtcgtAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGa > 2:261992/1‑106 (MQ=255) tcgtAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATcccc > 1:1225151/1‑142 (MQ=255) tcgtAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATcccc < 2:1225151/142‑1 (MQ=255) cgtAGGAGCGGGTTTACCCCCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCt < 1:124944/150‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCttt < 1:1821799/150‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCttt > 1:2381115/1‑150 (MQ=255) aGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTc < 1:188809/150‑1 (MQ=255) gAGCGGTTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACg < 1:762977/87‑1 (MQ=255) gAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACg > 2:762977/1‑87 (MQ=255) aGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGc > 1:1118240/1‑150 (MQ=255) gCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGct > 2:306423/1‑150 (MQ=255) gggTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGctct < 2:1335626/150‑1 (MQ=255) gggCTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGctct > 2:2187562/1‑150 (MQ=255) ttttCCCCGCGAAGTTGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTgg < 2:1118240/149‑1 (MQ=255) gTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTgg > 1:1702750/1‑150 (MQ=255) gTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTgg > 1:2378178/1‑150 (MQ=255) tttACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAATGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTggg < 2:1145430/150‑1 (MQ=255) | GAAGCCGTCAACCGCCTGCGCAAGGAAAGGTTGCTGATCAAGGACAAGATCGAACGGATCATTCATCCGCCCAAATCCTGACAGGCATCTATTGAATCCACCGGCCTCTTCGCGGGCAAGCCCGCTCCTAC‑ACCGTCGTAGGAGCGGGTTTACCCGCGAAAGGGCCTGCGGCCCTCACACAGCGACCAGCGCTTTCAACGCCCCATCCAGGTCCTCGACCAGGTCACGGTAATCCTCGATCCCTACCGACAACCGCAGCAGGTTCTCGCTGATCCCCATCACCCCTTTCTGCTCTGGG > NC_002947/5212404‑5212701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |