| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,233,591 | T→C | 6.6% | V136A (GTC→GCC) | PP_4611 → | ECF family RNA polymerase sigma‑70 factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,233,591 | 0 | T | C | 6.6% | 351.6 / 9.5 | 119 | V136A (GTC→GCC) | PP_4611 | ECF family RNA polymerase sigma‑70 factor |
| Reads supporting (aligned to +/- strand): ref base T (57/54); new base C (5/3); total (62/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.21e-01 | |||||||||||
Only 100 of 121 total aligned reads displayed.
GCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTG > NC_002947/5233443‑5233740 | gCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTc > 2:1379408/1‑150 (MQ=255) cTGCAAGCGGTTGCACAGGTCTCGTAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGc < 2:138406/150‑1 (MQ=255) cTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGc < 2:2115708/150‑1 (MQ=255) cTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGc < 1:1370869/150‑1 (MQ=255) tGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGcc > 1:702007/1‑150 (MQ=255) gCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCTACGGCCt > 1:32700/1‑150 (MQ=255) aaGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTGCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTgg < 2:199474/150‑1 (MQ=255) aGCGCTCGCACTGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTggg > 2:1824671/1‑150 (MQ=255) gcgcTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGc > 2:1227535/1‑150 (MQ=255) gcTCGCACAGGTCCCGGAAGAGGTCACGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCa > 1:1873224/1‑150 (MQ=255) cTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GCCGTCGACCTGGGCCag < 2:2097237/150‑2 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAg > 1:2165942/1‑150 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAg < 1:2074844/150‑1 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGCCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGcc < 1:677637/141‑1 (MQ=255) tCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGGTGGTCAAACGCGCCTTCCTGCTGGC‑CCAT‑GTCGACGGCCGGGGCCAAg > 2:496866/1‑150 (MQ=255) cGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCagca < 1:1797953/150‑4 (MQ=255) gCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGc < 2:1669532/150‑1 (MQ=255) gCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGc > 2:591622/1‑150 (MQ=255) gTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAAt < 2:438389/137‑1 (MQ=255) tCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTgg < 2:1967892/150‑1 (MQ=255) tCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTgg > 1:1093164/1‑150 (MQ=255) cgcgCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTggg < 2:2027650/150‑1 (MQ=255) gcgcCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGc > 2:1284655/1‑150 (MQ=255) tGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCg > 2:110117/1‑150 (MQ=255) cGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCt < 1:110117/150‑1 (MQ=255) aGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTgg < 1:1824671/150‑1 (MQ=255) ggAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGAc > 2:497731/1‑103 (MQ=255) ggAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGAc < 1:497731/103‑1 (MQ=255) gAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGt < 1:2390401/150‑1 (MQ=255) gAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGt > 1:552652/1‑150 (MQ=255) ggCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGTGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCaa < 1:673703/150‑1 (MQ=255) ggCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCaa < 1:725448/150‑1 (MQ=255) ggCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCaa < 2:2143248/150‑1 (MQ=255) ggCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCaa < 1:317331/150‑1 (MQ=255) gATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgcg > 1:1068254/1‑150 (MQ=255) atcatcTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgc < 1:387687/148‑1 (MQ=255) atcatcTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgc > 2:387687/1‑148 (MQ=255) catcTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCTTTGGGCACAAGCGCCTTCCTACTGCCTTCAGTGCCGTTTG‑CTGGG‑CTAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCGCGGTCAAGCGCTa > 1:1151106/1‑150 (MQ=255) tcTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGa < 1:1496581/103‑1 (MQ=255) ttCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTg > 1:2375520/1‑150 (MQ=255) ttCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTg > 1:1005005/1‑150 (MQ=255) ttCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTg > 1:2174378/1‑150 (MQ=255) aTTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTTGGCCAAGGCGAAATCGCTCGCGAACTGGGGATTTATTTTGCCACGGTCAAGCGCTACCTGAACAAGGc > 2:1170368/1‑150 (MQ=255) aTTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGc > 1:506087/1‑150 (MQ=255) aTTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGc > 1:299294/1‑150 (MQ=255) ttGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACTGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCa < 1:1769849/150‑1 (MQ=255) ttGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGACCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCa > 2:1664633/1‑150 (MQ=255) cTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGcc > 2:348044/1‑150 (MQ=255) gcgcTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATg > 1:1339157/1‑150 (MQ=255) gcTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgcg > 1:234549/1‑150 (MQ=255) gcTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgcg > 2:277133/1‑150 (MQ=255) gcTCGACCACTTGCTGGACGGCCTTCCACCGGTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgcg > 1:1109253/1‑150 (MQ=255) gACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTgg < 1:648677/70‑1 (MQ=255) gACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTgg > 2:648677/1‑70 (MQ=255) ccACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTa > 1:1448816/1‑150 (MQ=255) aCTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTg < 1:2348438/104‑1 (MQ=255) cTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGt > 1:425510/1‑111 (MQ=255) ttGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGa < 2:2164767/74‑1 (MQ=255) ttGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGa > 1:2164767/1‑74 (MQ=255) cTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GCCGTCGACCTGGGCCagca > 1:658116/1‑65 (MQ=25) cTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GCCGTCGACCTGGGCCagca < 2:658116/68‑4 (MQ=25) ggACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCt < 2:1093164/150‑1 (MQ=255) ttCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGc < 2:1068254/150‑1 (MQ=255) ccACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCt < 2:702007/150‑1 (MQ=255) cACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTc < 2:810184/150‑1 (MQ=255) aCCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTc < 2:1732879/149‑1 (MQ=255) aCCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCg > 1:589372/1‑150 (MQ=255) ccGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGt < 1:922628/150‑1 (MQ=255) gTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGttt > 2:1821615/1‑150 (MQ=255) ttGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGtttt < 2:1339157/150‑1 (MQ=255) ggTCAAACGCGCCTTCCTGCTGGC‑CCCG‑GTTGTCGGCCTGGGCCAAGGCGAGATCTCTCGCGCACTGGGGATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCCGCTATGCGCTGCACCTTCGCGCTGTGTACGCCTCGTTTTcc < 2:32700/150‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACaa > 2:1534240/1‑104 (MQ=255) gTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACaa < 1:1534240/104‑1 (MQ=255) gTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGAAGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgcgc > 2:910051/1‑93 (MQ=255) gTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGAAGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAgcgc < 1:910051/93‑1 (MQ=255) tCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTcccc > 2:448989/1‑150 (MQ=255) cAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTcc > 1:113326/1‑147 (MQ=255) cAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTcc < 2:113326/147‑1 (MQ=255) aCGCGCCTTCCTGCTGGC‑CCGG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtg > 2:1732145/1‑150 (MQ=255) aCGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATgcg < 2:697703/111‑1 (MQ=255) cgcgCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtgg > 2:149053/1‑150 (MQ=255) gcgcCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggt > 2:2272035/1‑150 (MQ=255) gcgcCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggt > 1:960629/1‑150 (MQ=255) ttCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggtgg < 1:2239975/147‑1 (MQ=255) ttCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCtggtgg > 2:2239975/1‑147 (MQ=255) ccTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGaa < 2:234549/150‑1 (MQ=255) ccTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGaa < 2:552652/150‑1 (MQ=255) gctgGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAg > 2:1012285/1‑150 (MQ=255) ttgGC‑CCAG‑GCCGTCGACCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCt > 2:2234599/2‑136 (MQ=255) ttcgC‑CCAG‑GCCGTCGACCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCt < 1:2234599/133‑1 (MQ=255) tgGC‑CCAG‑GTCGACGACCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGc < 1:1664633/150‑1 (MQ=255) ggC‑CCAG‑GTCGACACCCTGGGCCAAGGCGAAATCGCTCGCGAAATGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGcc < 1:496866/150‑1 (MQ=255) c‑ccAG‑GCCGTCGACCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 1:931311/1‑150 (MQ=255) c‑ccAG‑GCCGTCGACCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGt > 1:1461210/1‑150 (MQ=255) ccAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTg > 2:117053/1‑150 (MQ=255) ccAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTg > 2:480721/1‑150 (MQ=255) g‑gTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCAt > 2:355788/1‑150 (MQ=255) gTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCAtt < 1:1284655/150‑1 (MQ=255) gTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCAtt < 2:510457/150‑1 (MQ=255) tCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCGACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTg < 2:1873224/150‑1 (MQ=255) | GCCTACCTGCAAGCGCTCGCACAGGTCCCGGAAGAGGTCGCGCCGTGCGAGGAACAGAAGGCGATCATCTTCGAGACATTGCTAGCGCTCGACCACTTGCTGGACGGCCTTCCACCGTTGGTCAAACGCGCCTTCCTGCTGGC‑CCAG‑GTCGACGGCCTGGGCCAAGGCGAAATCGCTCGCGAACTGGGCATTTCGCTGGCCACGGTCAAGCGCTACCTGAACAAGGCAGCCATGCGCTGCTACTTCGCGCTGTGAACGCCTCGTTTTCCCCGCTGGTGGCGGAACAGGCCGTGCATTG > NC_002947/5233443‑5233740 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |