| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,325,559 | T→A | 7.7% | noncoding (133/149 nt) | PP_mr52 → | PrrF ncRNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,325,559 | 0 | T | A | 7.7% | 273.1 / 9.7 | 88 | noncoding (133/149 nt) | PP_mr52 | PrrF ncRNA |
| Reads supporting (aligned to +/- strand): ref base T (42/39); new base A (5/2); total (47/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGGGCAAAGGGATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCCAGCAGCAATACCTT > NC_002947/5325416‑5325708 | cGGGGCAAAGGGATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATCGACCCGGCAATTTGCCg < 2:2360419/150‑1 (MQ=255) gggCAAAGGGATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCggg > 1:1240653/1‑150 (MQ=255) aaaGGGATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCtt > 2:2149198/1‑150 (MQ=255) aaGGGATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCttt < 2:928384/150‑1 (MQ=255) gggATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCttttt > 1:768628/1‑150 (MQ=255) gggATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCttttt < 1:1995534/150‑1 (MQ=255) cgtcTAAATGAGAATTGTTATAAGTATCGCAACTGGTCGCGAGACTGCTGGGATAAGCCAAGAGCCCCTGCTTCGGACTCTCAGATTAGCTCCTCATCAGGCTAATCACGCCTATTGACCCGCCAATTTCCCGGGCCTATTTTTGCCtgt < 2:121189/147‑1 (MQ=255) aTGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGAGTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTCGCCTGTGCCtttt > 1:1140444/1‑150 (MQ=255) tGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCTGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTc > 2:211995/1‑150 (MQ=255) tGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTc < 1:212637/150‑1 (MQ=255) gagaATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCa < 2:1841140/150‑1 (MQ=255) aaTTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCttttttt < 2:1914570/132‑1 (MQ=255) aaTTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCttttttt > 1:1914570/1‑132 (MQ=255) aTTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGAt < 1:211995/150‑1 (MQ=255) tattatCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGcgccg > 2:1219270/1‑150 (MQ=255) attatCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGcgccgc < 1:2003364/150‑1 (MQ=255) ttatCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGGCCCGGCAATTTGCCGGGTCTTTTTTTGCATGTGCCTTTTCAGGATCAGCGCCGCa > 1:1322925/1‑150 (MQ=255) cTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGc > 1:1670768/1‑114 (MQ=255) cTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGc < 2:1670768/114‑1 (MQ=255) gcgAGACTGGTTGGAACAGCTGAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACaataat > 2:2020701/1‑150 (MQ=255) cgAGACTGGTTGAATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATc < 2:336963/150‑1 (MQ=255) gagaCTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCg < 2:659684/93‑1 (MQ=255) gagaCTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCg > 1:1856156/1‑93 (MQ=255) gagaCTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCg < 2:1856156/93‑1 (MQ=255) gagaCTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCg > 1:659684/1‑93 (MQ=255) gagaCTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCACGATCAGCGCCGCAGCTGCGCACAATAATcc > 2:825701/1‑150 (MQ=255) tGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCttttttt > 2:1560937/1‑99 (MQ=255) tGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCttttttt < 1:1560937/99‑1 (MQ=255) ggTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTcc < 1:1219270/150‑1 (MQ=255) gctGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCg > 1:567298/3‑150 (MQ=255) aTAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCa > 2:896348/1‑107 (MQ=255) aTAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCa < 1:896348/107‑1 (MQ=255) cTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCt > 1:1996592/1‑137 (MQ=255) cTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCt < 2:1996592/137‑1 (MQ=255) agagCCCCTTGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCgt < 1:911846/150‑1 (MQ=255) agagCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCACGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCgt < 2:342195/150‑1 (MQ=255) ccTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACca < 1:711511/150‑1 (MQ=255) cTGGTTCGGACTCTCAGATTATCTCCTCATCAAGCTAATCACGGTTATTGACTCGGCAATTTGCCGGGTCGTTTTTTGCCTGTGAGTTTTCGGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCCGCATCGCCGGGGTGTGCcac > 1:1748227/1‑150 (MQ=37) ggTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGCATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCAGGCATCGCCGCCGTGTACcacac < 2:294408/150‑1 (MQ=255) gTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCtgt > 2:2396256/1‑80 (MQ=255) gTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCtgt < 1:2396256/80‑1 (MQ=255) gTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTgcg < 2:1604064/109‑1 (MQ=255) gTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTgcg > 1:1604064/1‑109 (MQ=255) ttCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACcacacaa > 2:1740072/1‑149 (MQ=255) ttCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACAt > 1:2246453/1‑150 (MQ=255) cGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATaa < 1:1348624/150‑1 (MQ=255) ggACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCGGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATGAGCGCCGCATCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAAt > 2:53360/1‑150 (MQ=255) aCTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTCGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCa < 2:1140444/150‑1 (MQ=255) tcAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCCCCGTGTACCACACATAATCAGCCt > 2:420445/1‑150 (MQ=255) cAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTc < 2:768628/150‑1 (MQ=255) ttATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCCAGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCa < 2:2373148/150‑1 (MQ=255) tATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAg < 1:2149198/150‑1 (MQ=255) tctcCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGc < 2:1226653/150‑1 (MQ=255) tcctcATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCa > 1:360605/1‑75 (MQ=255) tcctcATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCa < 2:360605/75‑1 (MQ=255) cctcATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCg < 2:1972784/150‑1 (MQ=255) ctcATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACca > 1:363658/1‑124 (MQ=255) ctcATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACca < 2:363658/124‑1 (MQ=255) atcaGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtc > 1:1383352/1‑150 (MQ=255) aGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtcgct > 1:1027697/1‑150 (MQ=255) aGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtcgct > 1:1310865/1‑150 (MQ=255) gCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtcgctcg > 1:626122/1‑150 (MQ=255) tAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTc < 2:694012/129‑1 (MQ=255) tAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTc > 1:694012/1‑129 (MQ=255) tAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtcg < 1:1598304/144‑1 (MQ=255) tAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtcg > 2:1598304/1‑144 (MQ=255) aCGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTAc < 2:1962932/107‑1 (MQ=255) aCGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTAc > 1:1962932/1‑107 (MQ=255) ggTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTca > 1:494868/1‑150 (MQ=255) ggTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTca > 2:2176742/1‑150 (MQ=255) agACCCGGCAAATTGCAGGGTCTTTTTTTGACTGTGGCTCTTCGCGGTCAGCGCCGCGGCTTCGCACAGCAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTcagccagc > 2:1480775/2‑150 (MQ=255) gACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCt > 1:1831538/1‑123 (MQ=255) gACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCt < 2:1831538/123‑1 (MQ=255) aCCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCcagcag > 2:710367/1‑150 (MQ=255) aCCCGGCAAATTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGTGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAgg < 1:1648059/120‑1 (MQ=255) aCCCGGCAAATTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGTGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAgg > 2:1648059/1‑120 (MQ=255) aCCCGGCAAATTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCcagcag > 1:1495804/1‑150 (MQ=255) ccGGCAAATTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACca > 2:1428259/1‑97 (MQ=255) ccGGCAAATTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACca < 1:1428259/97‑1 (MQ=255) ccGGCAAATTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCCAgcagca > 2:1647734/1‑150 (MQ=255) cGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCt > 1:2075814/1‑74 (MQ=255) cGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCt < 2:2075814/74‑1 (MQ=255) cGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCCAGCAGCaa < 1:2176742/150‑1 (MQ=255) cGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGACTCCCCAAGAGCGGTTCTCTCCCCCACCGCATCCAGCAGCaa > 1:1736851/1‑150 (MQ=255) ggCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtcgctc > 2:489656/1‑128 (MQ=255) ggCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTtcgctc < 1:489656/128‑1 (MQ=255) aaTTTGCCGGGTCTTTTTTTTTTTTTTTTTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTCCCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCCAGCAGCAATAcc > 2:2350447/1‑150 (MQ=255) aaTTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGCATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGACATCAGCAATAcc > 1:1062689/1‑150 (MQ=255) tttGCCGGGTCTTTTTTTGCCTGAGCTTATCCAGGTGGAGGTCCTGAGCTGCGCACCATAACCCTAGAGCCGCTTCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCCAGCAGCAATACCtt < 1:420445/150‑1 (MQ=255) | CGGGGCAAAGGGATTGACGGCTAAATGAGAATTGTTATTATTATCGCAACTGGTCGCGAGACTGGTTGGATAAGCTAAGAGCCCCTGGTTCGGACTCTCAGATTATCTCCTCATCAGGCTAATCACGGTTATTGACCCGGCAATTTGCCGGGTCTTTTTTTGCCTGTGCCTTTTCAGGATCAGCGCCGCAGCTGCGCACAATAATCCTGCTCCGGCATCGCCGCCGTGTACCACACATAATCAGCCTCGCCAGGCTCGGTTCGCTCGCCCACCTCAGCCAGCAGCAATACCTT > NC_002947/5325416‑5325708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |