| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 451,273 | A→T | 6.5% | R201R (CGT→CGA) | PP_0371 ← | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 451,273 | 0 | A | T | 6.5% | 271.2 / 6.2 | 89 | R201R (CGT→CGA) | PP_0371 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (35/48); new base T (3/3); total (38/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCATCTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGCCCTGGCTG > NC_002947/451124‑451422 | tcatcTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGa < 1:1054006/150‑1 (MQ=255)tcatcTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGa < 2:2120135/150‑1 (MQ=255)tcatcTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGa < 1:1461232/150‑1 (MQ=255)tcatcTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGa < 1:1305938/150‑1 (MQ=255) catcTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGAc < 1:183355/150‑1 (MQ=255) atcTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACg > 2:2334252/1‑150 (MQ=255) cggcggCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCt < 2:1028084/150‑1 (MQ=255) gcggcCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCAACAACAGCCTT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTgg < 2:593404/150‑1 (MQ=255) tcctTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAActcc > 2:1322466/1‑150 (MQ=255) tcctTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAActcc < 1:1322466/150‑1 (MQ=255) ctTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAActcctc > 1:124413/1‑150 (MQ=255) cgcgcCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCca < 1:486546/150‑1 (MQ=255) gcgcCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAActcctc > 1:1034163/1‑144 (MQ=255) gcgcCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAActcctc < 2:1034163/144‑1 (MQ=255) gcCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCcagca < 2:2383700/150‑1 (MQ=255) ccGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCCGTCAGATCTggca < 1:1008083/133‑3 (MQ=255) ccGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCCGTCAGATCTggca > 2:1008083/1‑131 (MQ=255) cGGCAGAATGGTCGCCAGCGCTGTATTGATGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCcatgctgat > 1:1271346/1‑143 (MQ=255) gCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTgg < 2:1623430/128‑1 (MQ=255) gCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTgg > 1:1623430/1‑128 (MQ=255) cAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCcagcatcagcat < 2:1147148/150‑1 (MQ=255) aGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATGCCTGCCAGATTGTGCATCTATGCCTGCAGCTGCGGCGGTACGGGCCTG‑GTTGCCTGTGGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCGGCATCAGCATg > 1:550341/1‑150 (MQ=255) gAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCCGTCAGATCTggcag > 1:387213/1‑125 (MQ=255) gAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCCGTCAGATCTggcag > 1:386377/1‑125 (MQ=255) gAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCCGTCAGATCTggcag < 2:386377/128‑4 (MQ=255) gAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCCGTCAGATCTggcag < 2:387213/128‑4 (MQ=255) aaTGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATggg < 1:586863/150‑1 (MQ=255) aTGGTCGCCAGCGTTTTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGc < 2:2244346/150‑1 (MQ=255) ggTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCca > 2:1101649/1‑134 (MQ=255) ggTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCca < 1:1101649/134‑1 (MQ=255) cAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGACAACTctgc > 1:714655/1‑150 (MQ=255) tgtgCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGAc > 2:116560/1‑150 (MQ=255) gcgcGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGa > 1:2095789/1‑150 (MQ=255) cgcgAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGAt < 1:1117480/150‑1 (MQ=255) gcgAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATg < 2:733589/150‑1 (MQ=255) gAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCcagcatc < 2:401672/118‑1 (MQ=255) gAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCcagcatc > 1:401672/1‑118 (MQ=255) aGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGac < 2:925362/150‑1 (MQ=255) ggCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGaca < 2:2095789/150‑1 (MQ=255) aTCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACctt > 2:1337416/1‑150 (MQ=255) tCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGa > 2:610396/1‑143 (MQ=255) tCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGa < 1:610396/143‑1 (MQ=255) gagaATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACcttcta < 2:1656950/150‑2 (MQ=255) agaATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTg > 2:2128398/1‑150 (MQ=255) aaTCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGaa < 1:961178/150‑1 (MQ=255) aaTCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGaa < 1:37461/150‑1 (MQ=255) aTCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAg < 2:1886637/150‑1 (MQ=255) tCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACcttc < 2:1203779/143‑1 (MQ=255) tCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACcttc > 1:1203779/1‑143 (MQ=255) tCCCTGCCATATTGCTCCTCTATGCCTGCACCTGCGGCCGT‑CAGCCCTGACTGGTCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGt < 2:127175/150‑1 (MQ=255) ccATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCa > 1:918267/1‑150 (MQ=255) cATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAg > 1:346621/1‑150 (MQ=255) atatTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGc < 1:31357/150‑1 (MQ=255) tGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCTGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCgggt < 2:714655/150‑1 (MQ=255) tGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCgggt < 1:2313390/150‑1 (MQ=255) tGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGACTTCTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCgggt < 1:1869695/150‑1 (MQ=255) ttCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCgggtgg < 2:124413/150‑1 (MQ=255) ctctGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATg > 1:1541182/1‑115 (MQ=255) ctctGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATg < 2:1541182/115‑1 (MQ=255) tctGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCg > 1:777596/1‑150 (MQ=255) ctgcctgcACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCgg < 1:2183219/150‑1 (MQ=255) cctgcACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTa < 1:903897/150‑1 (MQ=255) ctgcACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGATTGCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTAt < 1:287129/150‑1 (MQ=255) tgcACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGacac < 2:1067744/113‑1 (MQ=255) tgcACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGacac > 1:1067744/1‑113 (MQ=255) tgcACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAg < 2:1139645/123‑1 (MQ=255) tgcACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAg > 1:1139645/1‑123 (MQ=255) cACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGAc > 1:711321/1‑150 (MQ=255) cACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGAc < 2:918267/150‑1 (MQ=255) aCCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGAcc > 1:499771/1‑150 (MQ=255) cTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGcc > 2:1241343/1‑94 (MQ=255) cTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGcc < 1:1241343/94‑1 (MQ=255) tGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGTACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGt > 2:711087/1‑150 (MQ=255) ccGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAg < 1:2334252/150‑1 (MQ=255) cGGCCCTGCCTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCa < 2:630469/150‑1 (MQ=255) gCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCcagcatca < 2:941557/52‑1 (MQ=255) gCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCcagcatca > 1:941557/1‑52 (MQ=255) gCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCggcggc > 1:1472132/1‑71 (MQ=255) gCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCggcggc < 2:1472132/71‑1 (MQ=255) gcgcCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGc < 1:996120/150‑1 (MQ=255) gcCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGAt > 1:1100696/1‑71 (MQ=255) gcCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGAt < 2:1100696/71‑1 (MQ=255) gcCTGCCAGATCTGACGGAACTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCAGCTTCGCACAACAGCAAGCCa > 2:897805/1‑150 (MQ=255) gCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCa < 1:323947/125‑1 (MQ=255) gCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCa > 2:323947/1‑125 (MQ=255) ccAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAg > 1:1265894/1‑150 (MQ=255) ccAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAg > 1:839659/1‑150 (MQ=255) aGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCgggtgg < 2:1605155/95‑1 (MQ=255) aGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCgggtgg > 1:1605155/1‑95 (MQ=255) aGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGcc > 1:823429/1‑150 (MQ=255) aTCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGCCct < 2:346621/150‑1 (MQ=255) tCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGCGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGCCctg < 1:1337416/150‑1 (MQ=255) cTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGCCctgg < 2:651147/150‑1 (MQ=255) aCGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGcc > 2:1554997/1‑143 (MQ=255) aCGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGcc < 1:1554997/143‑1 (MQ=255) aCGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGCCctggctg < 1:711087/150‑1 (MQ=255) | TCATCTTCGGCGGCCTCCTTGGCGCGCCCCGGCAGAATGGTCGCCAGCGCTGTGTGCGCGAGGCTATCGAGAATCCCTGCCATATTGTTCATCTCTGCCTGCACCTGCGGCCGT‑CGGCCCTGACTGGCCAGTTGCGCCTGCCAGATCTGACGGATCTGGAACTCCTCGCCCAGCATCAGCATGGGCAACTCGGCGGCCTGACGGATGGACACCTTCTTGAAGTCCTTCAGCGGGTGGGTATCGGGTATGACCAGTTGCAGCTCATCTTCGTACAACAGCAGGCCATGCAGCCCTGGCTG > NC_002947/451124‑451422 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |