BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,384,576	G→C	5.3%	G331A (GGC→GCC)	lldP →	L‑lactate permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,384,576	0	G	C	5.3%	404.0 / 8.1	123	G331A (GGC→GCC)	lldP	L‑lactate permease
Reads supporting (aligned to +/- strand): ref base G (60/56); new base C (3/4); total (63/60)
Fisher's exact test for biased strand distribution p-value = 7.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 123 total aligned reads displayed.

AGCCGTTGTGCAGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCG  >  NC_002947/5384436‑5384716

aGCCGTTGTGCAGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGAt                                                                                                                                     >  1:2357550/1‑150 (MQ=255)

aGCCGTTGTGCAGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGAt                                                                                                                                     <  2:587874/150‑1 (MQ=255)

 gCCGTTGTGCAGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGCCCGGCGCGaaa                                                                                                                                    <  1:1592726/150‑3 (MQ=255)

          cAGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTc                                                                                                                           <  2:2240932/150‑1 (MQ=255)

          cAGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTc                                                                                                                           <  2:2409367/150‑1 (MQ=255)

           aGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCTTTTCTGATCCTCACCGTGCTGGTCACCATCTGGCCCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCg                                                                                                                          <  1:1975724/150‑1 (MQ=255)

             ccAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCgtg                                                                                                                        >  2:1660724/1‑150 (MQ=255)

              cAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCgtgt                                                                                                                       >  1:962274/1‑150 (MQ=255)

               aaGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGtt                                                                                                                      <  1:669659/150‑1 (MQ=255)

                   ggCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAAc                                                                                                                  >  2:1437369/1‑150 (MQ=255)

                    gCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTc                                                                                                                           >  1:113001/1‑140 (MQ=255)

                     cagccagcCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTc                                                                                                                     <  2:1255813/145‑1 (MQ=255)

                     cagccagcCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTc                                                                                                                     >  1:1255813/1‑145 (MQ=255)

                      agccagccTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTc                                                                                                               <  1:968490/150‑1 (MQ=255)

                       gccagccTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTa                                                                                                                                  <  1:2355123/130‑1 (MQ=255)

                       gccagccTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTa                                                                                                                                  >  2:2355123/1‑130 (MQ=255)

                       gccagccTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCg                                                                                                              <  2:621034/150‑1 (MQ=255)

                               aGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCg                                                                                                      >  1:1695977/1‑150 (MQ=255)

                               aGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCg                                                                                                      >  2:1738424/1‑150 (MQ=255)

                                  ccGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCAc                                                                                                   >  1:153072/1‑150 (MQ=255)

                                   cGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCAcc                                                                                                  <  1:642099/150‑1 (MQ=255)

                                        aGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGAc                                                                                             <  1:1774534/150‑1 (MQ=255)

                                          cTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGaaa                                                                                                                                    <  2:1612259/109‑3 (MQ=255)

                                          cTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCgtg                                                                                                                        <  1:1894824/121‑1 (MQ=255)

                                          cTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCgtg                                                                                                                        >  2:1894824/1‑121 (MQ=255)

                                          cTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCa                                                                                           >  2:2353974/1‑150 (MQ=255)

                                            ttGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCAACAGGCGCCTTGACCAGc                                                                                         >  2:1267599/1‑150 (MQ=255)

                                               gCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGGCCAGCTgg                                                                                      >  1:704619/1‑150 (MQ=255)

                                                cGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGt                                                                                     >  2:1185810/1‑150 (MQ=255)

                                                cGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACAGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTTGt                                                                                     <  2:1085478/150‑1 (MQ=255)

                                                cGAGATCTTCAAGGCCTGGTCGCCGTTACTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGt                                                                                     >  2:476076/1‑150 (MQ=255)

                                                 gagaTCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTg                                                                                    >  1:185722/1‑150 (MQ=255)

                                                  ggaTCTTCAAGCCCTGGTCGCCGTTCCTGATCCTCCCCGTGCTGGTCATCTTGTGGAGCCTGAAGCCGGTGAAGGCGGCTTCCGCGCCGGGCGGCGCGATGTACAGCTTCGTGTTGAACTTCGCCATCCCGCACCTCGCCCAGCTGGTGa                                                                                   <  2:1056805/149‑1 (MQ=255)

                                                  agaTCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGa                                                                                   <  1:1185810/150‑1 (MQ=255)

                                                      cTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCaa                                                                               <  1:1753053/150‑1 (MQ=255)

                                                      cTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCaa                                                                               <  1:1525285/150‑1 (MQ=255)

                                                       ttCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGt                                                                                                                                   <  1:692095/97‑1 (MQ=255)

                                                       ttCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGt                                                                                                                                   >  2:692095/1‑97 (MQ=255)

                                                       ttCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAg                                                                              >  2:1607134/1‑150 (MQ=255)

                                                       ttCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAg                                                                              >  1:1757921/1‑150 (MQ=255)

                                                           aGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCg                                                                          >  1:852309/1‑150 (MQ=255)

                                                             gCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCa                                                                        <  2:1381600/150‑1 (MQ=255)

                                                             gCCTGGTCGCCGTTACTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCa                                                                        <  1:476076/150‑1 (MQ=255)

                                                              ccTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCAc                                                                       <  1:82302/150‑1 (MQ=255)

                                                               cTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGAt                                                                                  <  1:1761258/138‑1 (MQ=255)

                                                               cTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCAcc                                                                      >  2:2365646/1‑150 (MQ=255)

                                                                tGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTc                                                                                                <  1:1178545/123‑1 (MQ=255)

                                                                tGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTc                                                                                                >  2:1178545/1‑123 (MQ=255)

                                                                tGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCg                                                                     >  1:938642/1‑150 (MQ=255)

                                                                 ggTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGa                                                                    <  1:1511848/150‑1 (MQ=255)

                                                                 ggTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGa                                                                    <  2:354606/150‑1 (MQ=255)

                                                                  gTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCgtg                                                                                                                        <  2:175360/97‑1 (MQ=255)

                                                                   tctccGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATc                                                                  <  2:865280/147‑1 (MQ=255)

                                                                   tCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATc                                                                  <  2:852309/150‑1 (MQ=255)

                                                                   tCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATc                                                                  <  1:1660724/150‑1 (MQ=255)

                                                                   tCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATc                                                                  <  2:1695977/150‑1 (MQ=255)

                                                                         ttCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGcc                                                            <  1:1996710/150‑1 (MQ=255)

                                                                           ccTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCcgc                                                          <  2:641397/150‑1 (MQ=255)

                                                                            cTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCcgcg                                                         >  1:1156758/1‑150 (MQ=255)

                                                                             tGATCCTCACCGTGCTGGTCACCATATGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAAAACGGACCGATAGTTGCtgcgt                                                        >  2:1117628/1‑149 (MQ=255)

                                                                              gATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGcc                                                       <  1:1607134/150‑1 (MQ=255)

                                                                               aTCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCg                                                      >  2:1466551/1‑150 (MQ=255)

                                                                                   tCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCg                                                  >  2:1199135/1‑150 (MQ=255)

                                                                                   tCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCg                                                  <  1:2353974/150‑1 (MQ=255)

                                                                                            tGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCcgg                                         >  2:363698/1‑150 (MQ=255)

                                                                                            tGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCcgg                                         <  2:2148018/150‑1 (MQ=255)

                                                                                            tGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCcgg                                         >  1:2148018/1‑150 (MQ=255)

                                                                                              gTCCCCATCTGGACCCTGAAGCCGTTTAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCCCACCTCGACCAGCTGGTGATCAAGACCGCACCGACCGTTGCCGCGCCGACCGCCATGCcggcg                                       <  2:1163372/150‑1 (MQ=255)

                                                                                                   cATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGtt                                  >  2:1313002/1‑150 (MQ=255)

                                                                                                    aTCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTc                                 <  1:1313002/150‑1 (MQ=255)

                                                                                                    aTCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGAACGCAAAGATCGTTGTCGCGCCGACCGCCATGCCGGCGGTGTTc                                 >  2:1469474/1‑150 (MQ=255)

                                                                                                    aTCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCAACAAAGGCATGAACCAGCTGGTGATCAAGAAAGCACAGATAGTTCCCGAGCGCACCCCCAGGCCGGCGGTGTTc                                 >  1:1251962/1‑150 (MQ=255)

                                                                                                      cTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCaa                               <  2:1757921/150‑1 (MQ=255)

                                                                                                       tGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAg                              <  1:1685176/150‑1 (MQ=255)

                                                                                                             cTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCt                                                                                                 >  1:1989128/1‑77 (MQ=255)

                                                                                                             cTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCt                                                                                                 <  2:1989128/77‑1 (MQ=255)

                                                                                                              tGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGCTGTACAACTTCGCGTTCAACTTAGCCATCCCGCACCTCGACCAGCTGCTGATCAAGACCGCACCGAGCGTTGTCGCCCCGACCGCCATGCCGGCGGGGTTCAAgcccgccc                       >  2:219809/1‑150 (MQ=255)

                                                                                                              tGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTg                                                                                       >  2:709214/1‑86 (MQ=255)

                                                                                                              tGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCaa                                                                               >  2:763632/1‑94 (MQ=255)

                                                                                                              tGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCaa                                                                               <  1:763632/94‑1 (MQ=255)

                                                                                                              tGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGAcc                       >  1:2036181/1‑150 (MQ=255)

                                                                                                               gAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGAccc                      <  2:1627216/150‑1 (MQ=255)

                                                                                                                   ccGATCTAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCCCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGAtc                  <  1:2303186/150‑1 (MQ=255)

                                                                                                                     gTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGAtctc                >  2:1440360/1‑150 (MQ=255)

                                                                                                                     gTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGAtctc                >  1:617349/1‑150 (MQ=255)

                                                                                                                      gcgaaGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGCCCGCCCTGCCGGAGGTATTCAAGCTCGACCCGATCTcc               >  1:1289726/4‑150 (MQ=255)

                                                                                                                       tCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCAt                                              >  2:220990/1‑118 (MQ=255)

                                                                                                                       tCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCAt                                              <  1:220990/118‑1 (MQ=255)

                                                                                                                       tCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCg              >  1:255960/1‑150 (MQ=255)

                                                                                                                          aGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCa           >  2:458424/1‑150 (MQ=255)

                                                                                                                          aGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCa           >  2:458844/1‑150 (MQ=255)

                                                                                                                               gcTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATc                                                                  >  1:2176594/1‑90 (MQ=255)

                                                                                                                                 tttCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGa                    <  1:1829066/134‑1 (MQ=255)

                                                                                                                                 tttCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGa                    >  2:1829066/1‑134 (MQ=255)

                                                                                                                                  atCGCGCCGCCCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTgg                                                                                      <  1:505293/66‑1 (MQ=39)

                                                                                                                                  atCGCGCCGCCCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCaa                                                                               >  1:313777/2‑74 (MQ=255)

                                                                                                                                   tCGCGCCTGCCGACGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCGCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACcg  <  2:2219439/150‑1 (MQ=255)

                                                                                                                                   tCGCGCCGCCCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCCCCGGCACcg  >  2:2067920/1‑150 (MQ=255)

                                                                                                                                     gcgcCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGc                                            <  2:1188704/106‑1 (MQ=255)

                                                                                                                                     gcgcCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGc                                            >  1:1188704/1‑106 (MQ=255)

AGCCGTTGTGCAGCCAAGCGGCAGCCAGCCTAGCCCGTACAGCTTTGGCGAGATCTTCAAGGCCTGGTCGCCGTTCCTGATCCTCACCGTGCTGGTCACCATCTGGACCCTGAAGCCGTTCAAGGCGGCTTTCGCGCCGGGCGGCGCGATGTACAACTTCGTGTTCAACTTCGCCATCCCGCACCTCGACCAGCTGGTGATCAAGACCGCACCGATCGTTGCCGCGCCGACCGCCATGCCGGCGGTGTTCAAGCTCGACCCGATCTCCGCCACCGGCACCG  >  NC_002947/5384436‑5384716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`