Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,426,139 G→C 8.7% W209C (TGG→TGC) ‡ PP_4765 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,426,1390GC 8.7% 284.3 / 11.0 98W209C (TGG→TGC) ‡PP_4765hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (43/44);  new base C (5/4);  total (48/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTGAAAGCCTCGGTCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGCCTGGTCGGCACCGGTCCG  >  NC_002947/5425990‑5426288
                                                                                                                                                     |                                                                                                                                                     
gTGAAAGCCTCGGTCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTgg                                                                                                                                                       >  1:99617/1‑150 (MQ=255)
   aaaGCCTCGGTCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAgc                                                                                                                                                    <  2:122667/150‑1 (MQ=255)
    aaGCCTCGGGCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGTGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATATCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCAGGCTGGAgcg                                                                                                                                                   >  1:634031/1‑150 (MQ=255)
     aGCCTCGGTCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAgcgc                                                                                                                                                  <  1:2375289/150‑1 (MQ=255)
       ccTCGGTCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAgcgcgc                                                                                                                                                >  2:1852822/1‑150 (MQ=255)
        cTCGGTCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCt                                                                                                                                               >  1:1303699/1‑150 (MQ=255)
             tCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGCGCTCCAGCCCGCTACttc                                                                                                                                          <  1:2104211/150‑3 (MQ=255)
               gtggtgCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAg                                                                                                                                        <  1:2170275/150‑1 (MQ=255)
                       ggCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGtt                                                                                                                                >  2:1195758/1‑150 (MQ=255)
                            tGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCgg                                                                                                                           >  2:1016556/1‑150 (MQ=255)
                            tGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCgg                                                                                                                           <  1:1315819/150‑1 (MQ=255)
                             gggTGGGGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCggg                                                                                                                          <  1:1899428/150‑1 (MQ=255)
                              ggtggtGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGgc                                                                                                                         >  1:2137102/1‑150 (MQ=255)
                               gtggtgCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGgcg                                                                                                                        >  1:1545654/1‑150 (MQ=255)
                               gtggtgCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGgcg                                                                                                                        >  2:1907045/1‑150 (MQ=255)
                                   tgCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCAc                                                                                                                     >  2:1025316/1‑149 (MQ=255)
                                   tgCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCAc                                                                                                                     <  1:1025316/149‑1 (MQ=255)
                                     ccAGCTGGGCGCGCCTGGGGTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGc                                                                                                                  >  2:1705261/1‑150 (MQ=255)
                                                 gcCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGa                                                                                                                                                      >  2:1687613/1‑102 (MQ=255)
                                                 gcCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGa                                                                                                                                                      <  1:1687613/102‑1 (MQ=255)
                                                   cTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGcc                                                                                                    <  1:259024/150‑1 (MQ=255)
                                                       gTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCa                                                                                                <  1:230324/150‑1 (MQ=255)
                                                        ttCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAg                                                                                               <  2:2137102/150‑1 (MQ=255)
                                                         tCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGc                                                                                              <  2:1502112/150‑1 (MQ=255)
                                                         tCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGc                                                                                              <  1:1488047/150‑1 (MQ=255)
                                                           tGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGt                                                                                            >  2:1868137/1‑150 (MQ=255)
                                                              cGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGa                                                                                                                                                      >  1:596117/1‑89 (MQ=255)
                                                              cGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGa                                                                                                                                                      <  2:596117/89‑1 (MQ=255)
                                                                    cTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAg                                                                                   >  1:775354/1‑150 (MQ=255)
                                                                     tGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAgc                                                                                  >  2:2244980/1‑150 (MQ=255)
                                                                       gCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCa                                                                                                >  1:1528512/1‑134 (MQ=255)
                                                                       gCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCa                                                                                                <  2:1528512/134‑1 (MQ=255)
                                                                       gCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAgcgc                                                                                >  2:1947152/1‑150 (MQ=255)
                                                                        cAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCa                                                                               <  1:1868137/150‑1 (MQ=255)
                                                                        cAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCa                                                                               >  2:443743/1‑150 (MQ=255)
                                                                         aaCCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTcgc                                                                                                                             >  1:294145/1‑103 (MQ=255)
                                                                         aaCCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTcgc                                                                                                                             <  2:294145/103‑1 (MQ=255)
                                                                          aCCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCAcc                                                                             >  2:94185/1‑150 (MQ=255)
                                                                            cGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACcgc                                                                           >  2:808588/1‑150 (MQ=255)
                                                                                   ggCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAggg                                                                    <  2:2092848/150‑1 (MQ=255)
                                                                                    gcagcaCGGGATGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGc                                                                   >  2:2154038/1‑150 (MQ=255)
                                                                                    gCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACGGCGCAAgggg                                                                   >  1:1310148/1‑149 (MQ=255)
                                                                                    gCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGc                                                                   <  1:443743/150‑1 (MQ=255)
                                                                                    gCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGc                                                                   >  1:2279994/1‑150 (MQ=255)
                                                                                      aGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGTAGCGCGCTACTCAAGGCCAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGa                                                                 <  2:1878793/150‑1 (MQ=255)
                                                                                      aGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGa                                                                 <  1:1907045/150‑1 (MQ=255)
                                                                                      aGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGa                                                                 <  1:94185/150‑1 (MQ=255)
                                                                                      aGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGAAGGATAAATCTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGa                                                                 <  1:1956011/150‑1 (MQ=255)
                                                                                      aGAACGGGCTGTGGATATCTCGCCTTGGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACCTCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGa                                                                 <  1:2301600/150‑1 (MQ=255)
                                                                                       gAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAg                                                                >  1:2056372/1‑150 (MQ=255)
                                                                                           gggCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCa                                                            >  2:806338/1‑150 (MQ=255)
                                                                                            ggCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCAt                                                           <  2:2380811/150‑1 (MQ=255)
                                                                                             gCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCAtt                                                          <  2:775354/150‑1 (MQ=255)
                                                                                               tgtgGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATtct                                                        >  1:1131462/1‑150 (MQ=255)
                                                                                                gtgGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATtctc                                                       >  2:1865639/1‑150 (MQ=255)
                                                                                                 tgGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCa                                                      <  2:2279994/150‑1 (MQ=255)
                                                                                                   gATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCAcc                                                    >  2:1923244/1‑150 (MQ=255)
                                                                                                      atCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGAGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCt                                                 >  1:13212/1‑150 (MQ=255)
                                                                                                       tctcGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCCCCGCTc                                                <  2:1310148/150‑1 (MQ=255)
                                                                                                        cccGCCTTTGCAGCCGAGCCACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTGCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCACACCGCGCAAGGGCGAGTTCATTCTCACCGCTCa                                               >  2:77575/3‑150 (MQ=255)
                                                                                                         tcGCCTTTGCAGCCGGGCAACTGCGGTTTTGAAGTAGGGGGATGGAGCGCGCTACTCAAGGCCAAGTTCGCGGGCGCACCGCTGAAGAACACCGCCCTCAGCGTCCCGGGCAGCGCACCGCCCAAGAGCGAGATCATTCCCACCGCACaa                                              >  2:915327/1‑150 (MQ=255)
                                                                                                         tcGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAgg                                                                     >  1:740915/1‑127 (MQ=255)
                                                                                                         tcGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAgg                                                                     <  2:740915/127‑1 (MQ=255)
                                                                                                          cGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACcgc                                                                           >  2:1794642/1‑120 (MQ=255)
                                                                                                          cGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACcgc                                                                           <  1:1794642/120‑1 (MQ=255)
                                                                                                             cTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGCGCTCCAGCCCGCTAc                                                                                                                                             <  2:1071975/51‑1 (MQ=18)
                                                                                                             cTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGCGCTCCAGCCCGCTAc                                                                                                                                             >  1:1071975/1‑51 (MQ=18)
                                                                                                              tttGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGt                                         <  1:1332009/150‑1 (MQ=255)
                                                                                                               ttGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGt                                         >  1:2248794/1‑149 (MQ=255)
                                                                                                               ttGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGt                                         <  2:2248794/149‑1 (MQ=255)
                                                                                                               ttGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTg                                        <  1:1195758/150‑1 (MQ=255)
                                                                                                                   aGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAg                                    <  1:375602/150‑1 (MQ=255)
                                                                                                                     ccGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAAAACATCTCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGc                                  >  2:1772346/1‑150 (MQ=255)
                                                                                                                           aaCTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTg                            <  1:806338/150‑1 (MQ=255)
                                                                                                                            aCTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTgg                           <  1:1923244/150‑1 (MQ=255)
                                                                                                                             ctgtagTTTTGAAGTAGCGAGTTGCTGCACTCTAATCAAGCACAAGGTCGCGGCCCCACCGCTGAAGAACATCGCCCTCAGCGTCCCAGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGgt                          <  2:149643/145‑1 (MQ=255)
                                                                                                                             cTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGgt                          >  2:2136273/1‑150 (MQ=255)
                                                                                                                             cTGCGGTTTTGAAGTAGCGGGCTGGACCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGgt                          <  1:915327/150‑1 (MQ=255)
                                                                                                                             cTGCGGTTTTGAAGTAGCGGGCCGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTAATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGgt                          <  1:229450/150‑1 (MQ=255)
                                                                                                                              tGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTg                            >  2:1008469/1‑147 (MQ=255)
                                                                                                                              tGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTg                            <  1:1008469/147‑1 (MQ=255)
                                                                                                                                  gTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACTAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGcc                              >  1:549061/1‑141 (MQ=255)
                                                                                                                                  gTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACTAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGcc                              <  2:549061/141‑1 (MQ=255)
                                                                                                                                   ttttGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGc                    >  2:1618909/1‑150 (MQ=255)
                                                                                                                                   ttttGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGc                    <  2:2056372/150‑1 (MQ=255)
                                                                                                                                   ttttGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGc                    >  1:463177/1‑150 (MQ=255)
                                                                                                                                   ttttGAAGTAGCGGGCTGGAGCGCGCTACTCAAAGGCGAATCCGCCGGCACACCGCGGAAGAACATGGCCCTCAGCGTCCCGGGCAGCGCACCGCGAAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGTTGTATGc                    <  2:2329213/150‑1 (MQ=255)
                                                                                                                                    ccttgaGTAGCGCACTCCAGCCCGCTACTCAAGGCCAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCTGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGcc                   >  2:1336976/6‑150 (MQ=255)
                                                                                                                                     cttgaGTAGCGCGCTCCAGCCCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGc                    >  1:1205555/5‑148 (MQ=255)
                                                                                                                                     cttgaGTAGCGCGCTCCAGCCCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGc                    <  2:1205555/144‑1 (MQ=255)
                                                                                                                                      ttgaGTAGCGCGCTCCAGCCCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGCCTg                 >  2:2023586/4‑150 (MQ=255)
                                                                                                                                      tGAAGTAGCGGGCTGGAGCGCGCTCATTAAGGACGGGTTAGCGAGCAGACATAATAAGAACACCGCCCTCATCTTCCCGTGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCATCCTGGTGTATGCCTg                 <  2:1131462/150‑1 (MQ=255)
                                                                                                                                       gAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGt                                                                                            >  2:228659/1‑74 (MQ=255)
                                                                                                                                       gAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGt                                                                                            <  1:228659/74‑1 (MQ=255)
                                                                                                                                       gAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAg                                    <  2:692585/130‑1 (MQ=255)
                                                                                                                                       gAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAg                                    >  1:692585/1‑130 (MQ=255)
                                                                                                                                        aaGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGCCTGGt               <  1:2136273/150‑1 (MQ=255)
                                                                                                                                          gTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGCCTGGTCg             <  1:808588/150‑1 (MQ=255)
                                                                                                                                              cGGGCTGCAGCGCGCTACTCAACGACAAGTTCGCGGGCGCACAGCTGAAGAACATCGCCCCCAGCGTCCCCGCCAGCGCCCCGCCCAACAGCGCGCGCATTCTCACCGCTCAACGCGTCGAAGGCAGCCTGGTGTATGCCAGTTCggaaa         >  2:1118213/1‑147 (MQ=255)
                                                                                                                                                     gAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGCCTGGTCGGCACCGGTCcg  >  2:847194/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
GTGAAAGCCTCGGTCGTGGTGCTGGCGCTGGGTGGTGCCAGCTGGGCGCGCCTGGGTTCTGACGGCAGCTGGCAACCGCTGCTGGCAGAACGGGCTGTGGATATCTCGCCTTTGCAGCCGAGCAACTGCGGTTTTGAAGTAGCGGGCTGGAGCGCGCTACTCAAGGACAAGTTCGCGGGCGCACCGCTGAAGAACATCGCCCTCAGCGTCCCGGGCAGCGCACCGCGCAAGGGCGAGTTCATTCTCACCGCTCAAGGCGTGGAAGGCAGCCTGGTGTATGCCTGGTCGGCACCGGTCCG  >  NC_002947/5425990‑5426288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑