| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,549,654 | T→A | 8.8% | intergenic (+19/‑153) | PP_t47 → / → PP_4881 | tRNA‑Leu/iron ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,549,654 | 0 | T | A | 8.8% | 283.0 / 14.7 | 91 | intergenic (+19/‑153) | PP_t47/PP_4881 | tRNA‑Leu/iron ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (41/42); new base A (3/5); total (44/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.51e-01 | |||||||||||
TGAAAGCGAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGAGGAA > NC_002947/5549505‑5549798 | tgAAAGCGAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCtt < 2:945838/150‑1 (MQ=255)tgAAAGCGAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCCGGTTTCAGGTATCAGTGACCGCAAGGTCGTGAAAGTTCCAGTATTCTCCAGGGCACCATACAAAAACCCACTAGCtt > 2:21317/1‑150 (MQ=25) aaaGCGAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGc > 1:1555588/1‑150 (MQ=255) gAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCCCGTCTCAGTGACCGCAAGTTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTg < 1:1497833/150‑1 (MQ=255) gAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCTCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTg < 2:1780742/150‑1 (MQ=255) gAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCAAGCTAGTg < 2:2149443/150‑1 (MQ=255) aCGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTggg > 2:1687506/1‑150 (MQ=255) gATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCAAGCTAGTGGGtt < 1:216236/150‑1 (MQ=255) tAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGtttt < 1:1687506/150‑1 (MQ=255) aGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCAAGCTAGTGGGttttt < 1:671651/150‑1 (MQ=255) aGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCAAGCTAGTGGGttttt < 2:2242896/150‑1 (MQ=255) tCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTc < 1:49755/150‑1 (MQ=255) gCCTTCTGCAGATGATGTAAAGCTTTGCGCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTTCTAGTGGGTTTTTTCtt < 2:1726961/150‑1 (MQ=255) ccTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTg > 1:612126/1‑150 (MQ=255) cTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGc < 2:438798/150‑1 (MQ=255) tGCAGATGATGTAAAGCTTTGCCCAGGTGGCGCACGTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGc > 1:2371812/1‑150 (MQ=255) cAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGa < 1:2041731/150‑1 (MQ=255) tgTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTAtgt < 1:1306657/150‑1 (MQ=255) tgTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCCGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTAtgt < 1:21317/150‑1 (MQ=255) gTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCAAGCTAGTg < 2:1817624/123‑1 (MQ=255) gTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCAAGCTAGTg > 1:1817624/1‑123 (MQ=255) tAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGc > 2:2345201/1‑150 (MQ=255) tAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGc > 2:788845/1‑150 (MQ=255) tAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGc > 1:2070870/1‑150 (MQ=255) tAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGc > 2:445674/1‑150 (MQ=255) ccAGGTGGCGGAATTGGTAGACGCGCTGTTTTCAGGTATCAGTGACCGCAAAACCGTACAAATTCGGGTCTACTTGTGGGCATCTTACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑cccccc > 1:901693/1‑150 (MQ=25) aGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTgg < 1:2172840/110‑1 (MQ=255) aGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTgg > 2:2172840/1‑110 (MQ=255) tGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGc < 1:835528/150‑1 (MQ=255) gCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCAc > 1:401903/1‑150 (MQ=255) cGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGTCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCAcc < 2:401903/150‑1 (MQ=255) ggAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCa > 1:144068/1‑150 (MQ=255) gAATTGGCAGACGCGCTGGTTTCAGCTATTAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTGTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCAt < 1:1703999/150‑1 (MQ=255) ttGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGt < 1:2064453/150‑1 (MQ=255) ttGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGt < 2:1555588/150‑1 (MQ=255) ggTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCt > 1:767650/1‑150 (MQ=255) tAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGa > 1:2198752/1‑150 (MQ=255) tAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGa < 1:2057159/150‑1 (MQ=255) aGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCCGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGAc < 1:1148379/150‑1 (MQ=255) gACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGc < 2:797096/105‑1 (MQ=255) gACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGc > 1:797096/1‑105 (MQ=255) gcgcTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATg > 1:113671/1‑150 (MQ=255) gcTTGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGaa < 2:612126/150‑1 (MQ=255) gcTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCAt > 1:2148555/1‑136 (MQ=255) gcTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCAt < 2:2148555/136‑1 (MQ=255) gcTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGaa > 1:252285/1‑150 (MQ=255) tGGTTACAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCNCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGGGGGTCTTTTCTTGCCTGCGATTTATGTGCCACC‑G‑CCCCCACTTCCTCAATGGTCAGACCacgggaa > 1:10913/1‑144 (MQ=25) ggTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAAttt > 2:334800/1‑150 (MQ=255) ttCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTtctc < 2:252285/150‑1 (MQ=255) cAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGt > 1:1648345/1‑150 (MQ=255) ggTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTca > 2:990574/1‑150 (MQ=255) cAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACgg < 2:1251030/150‑1 (MQ=255) gTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCAc > 1:1510817/1‑116 (MQ=255) gTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCAc < 2:1510817/116‑1 (MQ=255) gTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGt > 1:1608789/1‑141 (MQ=255) gTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGt < 2:1608789/141‑1 (MQ=255) ccGCAAGGTCGTGTAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACtt < 1:96462/150‑1 (MQ=255) cGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTg > 2:1303889/1‑150 (MQ=255) cGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCGACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACac < 2:1648345/150‑2 (MQ=255) gTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAAt < 2:767650/150‑1 (MQ=255) tGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGCTTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAAtt > 1:1342098/1‑150 (MQ=255) gTTCGAGTCTTCTCCTGGGCCACATACAATAACCCACTAGCGTGCGAGGGTGTTTTTTCGTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGtt < 2:2070870/150‑1 (MQ=255) gTTCGAGTCTTCTCCTGGGCACCATCCAACCACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGtt < 2:2198752/150‑1 (MQ=255) ttCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGttt < 1:588642/150‑1 (MQ=255) cGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTAc < 1:788845/150‑1 (MQ=255) cGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTAc < 1:990574/150‑1 (MQ=255) cgtctcCCGGGCAACCTTCAAAAACCCCCCTACCTGCTAAGGGGTTTTTTCTTTGCTACCATTTTTATGCCCCCTT‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCAtt < 1:1627785/148‑1 (MQ=255) ttctCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTca > 2:2163054/1‑114 (MQ=255) ttctCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTca < 1:2163054/114‑1 (MQ=255) tcCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCtt < 1:1277894/80‑1 (MQ=255) tcCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCtt > 2:1277894/1‑80 (MQ=255) tcCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTc > 2:1284707/1‑150 (MQ=255) tcCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGAGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGCCAACCGACTACTTGAGAAACAATTTCGTTTACCATTGTTTc > 2:1397211/1‑150 (MQ=255) cTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑TCCCCCCCCTCGCACCATGTTTCGACCATGAATTTTTGTTCCCACGGCCCCTTGAGAAAAAATTTCTTTTACCATTgagatt > 2:1627785/1‑145 (MQ=255) cTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGtt > 1:408048/1‑136 (MQ=255) cTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGtt < 2:408048/136‑1 (MQ=255) cTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCa > 1:1795579/1‑150 (MQ=255) tGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTtctc > 1:1675129/1‑104 (MQ=255) tGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTtctc < 2:1675129/104‑1 (MQ=255) cATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTa > 1:302527/1‑150 (MQ=255) aaaaaCCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTAcc < 2:2282364/127‑1 (MQ=255) aaaaaCCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTAcc > 1:2282364/1‑127 (MQ=255) aaaaaCCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGt > 2:2274256/1‑150 (MQ=255) aCCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGc > 2:1034121/1‑150 (MQ=255) ccACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTTGTCACACGGCCACTTGAGACAAACTCTCGTTTACCATTGTTTCCAAATATGTAGCCTTAATCGa > 1:634766/1‑150 (MQ=255) ccACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGa > 2:2280213/1‑150 (MQ=255) ccACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGa < 1:2280213/150‑1 (MQ=255) ccACTAGCAAGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGa > 1:970877/1‑150 (MQ=255) acACTAGCAAGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGa > 1:1769407/2‑150 (MQ=255) cACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGAg < 1:445674/150‑1 (MQ=255) aCTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTgag < 2:2366224/102‑1 (MQ=255) aCTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTgag > 1:2366224/1‑102 (MQ=255) tAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGAGGaa < 2:302527/150‑1 (MQ=255) | TGAAAGCGAACGATAGTCGCCTTCTGCAGATGATGTAAAGCTTTGCCCAGGTGGCGGAATTGGTAGACGCGCTGGTTTCAGGTATCAGTGACCGCAAGGTCGTGGAAGTTCGAGTCTTCTCCTGGGCACCATACAAAAACCCACTAGCTTGCTAGTGGGTTTTTTCTTGCCTGCGATTTATGTGCCCCC‑T‑CCCCCCCTTGCACCATGGTCTGACCATGAATTTCTCGTCACACGGCCACTTGAGAAACAATTTCGTTTACCATTGTTTCCAAATATGTAGCCGTAAGCGAGGAA > NC_002947/5549505‑5549798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |