| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,552,961 | T→G | 12.0% | intergenic (+576/+85) | PP_4882 → / ← PP_5717 | iron ABC transporter permease/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,552,961 | 0 | T | G | 12.0% | 276.5 / 30.9 | 110 | intergenic (+576/+85) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (50/46); new base G (6/7); total (56/54) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.77e-02 | |||||||||||
Only 100 of 118 total aligned reads displayed.
TTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACAG > NC_002947/5552812‑5553110 | ttCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCt > 2:1656560/1‑150 (MQ=255) ggTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCg < 1:2282950/150‑1 (MQ=255) ggTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCg > 1:726882/1‑150 (MQ=255) cTCATTTTCGCGCTCTCATAAGTCACTGAGCATCAGTTGGTACGTGTGA‑‑GTTACATTTGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCaaa < 2:63411/150‑1 (MQ=18) tCATTTTCGCGCTCTCATAAGTCACTGGGTTGCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAg > 1:63411/1‑150 (MQ=255) tCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAg > 2:1383307/1‑150 (MQ=255) aTTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCt < 1:1262451/140‑1 (MQ=255) ttttCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGccc < 2:1220774/150‑1 (MQ=255) ttttCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCGAAGCAAAGccc < 1:1597279/150‑1 (MQ=255) tttCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCg < 1:1405719/150‑1 (MQ=255) tCGCGCTCTCATAAGTCACTGCGCATCAGTCGAAACGTCTGGACCGTGC‑GCC‑GTGGACCAAGAAGCAGGCTTCTACTAAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCGAAGCAAAGCCCGGa < 1:2341432/150‑1 (MQ=12) tctcATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAACAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACggg > 1:319680/1‑150 (MQ=255) ctcATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTggg < 1:1493357/150‑1 (MQ=255) ctcATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTggg < 1:903756/150‑1 (MQ=255) tcatcaGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCGAAGCAAAGccc < 2:1675178/139‑1 (MQ=18) tcATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTgggg < 1:2399106/150‑1 (MQ=255) tcATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTgggg > 2:1541956/1‑150 (MQ=255) tcATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTggg > 2:592377/1‑149 (MQ=255) tcATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTggg < 1:592377/149‑1 (MQ=255) aTAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTc > 2:856588/1‑128 (MQ=255) aTAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTc < 1:856588/128‑1 (MQ=255) aTAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGtt > 2:1913484/1‑150 (MQ=255) aTAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGtt > 1:2007824/1‑150 (MQ=255) cACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTc > 1:1726936/1‑146 (MQ=255) cACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTc < 2:1726936/146‑1 (MQ=255) cTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCtgg < 1:483871/150‑1 (MQ=255) cTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCtgg < 2:1540662/150‑1 (MQ=255) cTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCGAAGCAAAGCCCg > 1:992448/1‑130 (MQ=255) tGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCg < 2:2347259/129‑1 (MQ=255) tGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCg > 1:2347259/1‑129 (MQ=255) gcATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTg > 2:1339329/1‑133 (MQ=255) gcATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGgc > 1:392252/1‑150 (MQ=255) gcATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGgc > 1:391782/1‑150 (MQ=255) gcATCAGTTGGTACGTCTGG‑‑GGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGgc > 2:643894/1‑150 (MQ=255) tACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAgtgt < 1:187935/150‑1 (MQ=255) aCGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGtt < 2:391782/150‑1 (MQ=255) cGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGttt < 1:316537/150‑1 (MQ=255) gTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTa > 2:1290922/1‑150 (MQ=255) gg‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGGATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGaaa > 1:1377880/1‑150 (MQ=255) cAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGa < 1:2407479/104‑1 (MQ=255) aGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATgg < 1:1383307/150‑1 (MQ=255) cGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGtt < 1:1656560/150‑1 (MQ=255) cAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACa > 2:1184911/1‑135 (MQ=255) cAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACa < 1:1184911/135‑1 (MQ=255) cAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTg > 2:25483/1‑150 (MQ=255) cAAGAAGCAGGCTTACGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATgg > 2:629516/1‑139 (MQ=255) cAAGAAGCAGGCTTACGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATgg < 1:629516/139‑1 (MQ=255) aagaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTgg < 2:2388972/97‑1 (MQ=255) aagaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTgg > 1:2388972/1‑97 (MQ=255) aagaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGtt < 2:1776618/141‑1 (MQ=255) aagaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGtt > 1:1776618/1‑141 (MQ=255) aagaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCGAAGCAAAGcc > 1:210128/1‑87 (MQ=17) agaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGtt < 2:2007824/150‑1 (MQ=255) gaagCGGGCTTGTGCCGAGCAAGGTCTTGAGGAATTCGGACACGGAGGGCTAGACCGGCAGGTGCG‑GGGTTTGGTTCGCATAGTCCGGAAACTGGGGTTTGGGCTGGTGGCTGCTTGAGTGTTTAGAACACAAGGGGTTGCATTCTGttt < 2:319680/150‑1 (MQ=255) gaagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGttt < 1:25483/150‑1 (MQ=255) aagCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTg < 1:1913484/150‑1 (MQ=255) agCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGa < 1:97326/150‑1 (MQ=255) aGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCtt < 2:1373724/111‑1 (MQ=255) aGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCtt > 1:1373724/1‑111 (MQ=255) gCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGtt > 1:1427448/1‑142 (MQ=255) ttATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCGCGGAAACGGGGGTGTCAGCTGTTGGCTGCTTGAGTGTTTAGAAAACAATGGATTGCATTCTGTTTGACCAGGGc > 1:1328723/1‑150 (MQ=17) ttATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGATTGAGTGTTTAGAAAAAAATGGGTTGAATTCTGTTTGagatcgga > 2:1260837/1‑143 (MQ=17) tGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTa < 2:1963950/113‑1 (MQ=255) gAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACAGGGCGGGCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTTTGTTTGACCAGGGCTTACCTc > 1:151270/1‑150 (MQ=17) cAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAg > 1:1403289/1‑150 (MQ=255) cAAGGTCTTGAGGAATTCCGAACCAGAAGCACCGACGCGCAGGCGGGTAGCCCT‑TTTCGCAAAGCCCGGAAGCTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCCGGGCTTACCTCAAg > 1:304507/1‑150 (MQ=18) aGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTa > 2:220965/1‑150 (MQ=255) gTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTAct < 2:2116334/150‑1 (MQ=255) ttGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTa > 2:959044/1‑150 (MQ=255) tGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTAt < 1:643894/150‑1 (MQ=255) gAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAAt > 2:234858/1‑106 (MQ=255) ggAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCa > 1:188265/1‑150 (MQ=255) ggAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATAGGTTGAATTCAAGTTGACCAGTGCTTACCTCAAGTACTCTATCCa > 1:1964593/1‑150 (MQ=18) aaTTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCaaa < 1:1541956/150‑1 (MQ=255) ttCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAGCTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGa < 2:304507/150‑1 (MQ=255) cGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGaaaa < 1:1290922/150‑1 (MQ=255) aCCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCaaaaaaaaaaaa < 2:1403289/150‑1 (MQ=255) cAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGaaa < 2:763649/144‑1 (MQ=255) cAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGaaa > 1:763649/1‑144 (MQ=255) cAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAg > 1:202684/1‑150 (MQ=255) gAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGaa < 1:2171158/150‑1 (MQ=255) aaGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTATTTGACTAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCa > 2:443926/1‑150 (MQ=255) aCCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAg < 2:850924/116‑1 (MQ=255) aCCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAg > 1:850924/1‑116 (MQ=255) gCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAAt > 1:811371/1‑150 (MQ=255) gCAGGTCCG‑GGCTTTGCATCGAAAAAACAGGAAAAAGGGGTTTCAGCTAGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCAAAAAAAAAAAAAAAAAGAACAATCAGTGCAAt < 2:1475981/150‑1 (MQ=21) tCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGt > 2:952126/1‑86 (MQ=255) cG‑GGCTTTGCGAAGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGttt < 2:2285265/86‑1 (MQ=18) cG‑GGCTTTGCGAAGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGttt > 1:1179296/1‑86 (MQ=18) cG‑GGCTTTGCGAAGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGttt < 2:1179296/86‑1 (MQ=18) cG‑GGCTTTGCGAAGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGttt > 1:2285265/1‑86 (MQ=18) cG‑GGCTTTGCGAAGCAAAGCCCAGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTa > 1:1732836/1‑98 (MQ=21) tttGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTg > 1:1048080/1‑150 (MQ=255) cTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGAc > 2:304512/1‑80 (MQ=255) cTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACGCGATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACa > 1:2331034/1‑150 (MQ=255) ttCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTAct < 2:439111/99‑1 (MQ=255) ttCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTAct > 1:439111/1‑99 (MQ=255) ttCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTAct > 2:2282674/1‑99 (MQ=255) ttCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTAct < 1:2282674/99‑1 (MQ=255) ttCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACAg > 1:440111/1‑150 (MQ=255) | TTCGGTACTCATTTTCGCGCTCTCATAAGTCACTGCGCATCAGTTGGTACGTCTGG‑‑TGTACAGCCGGTTCACCAAGAAGCAGGCTTATGCTGAACAAGGTCTTGAGGAATTCCGAACCAGAAGCCAAGACCGGCAGGTCCG‑GGCTTTGCTTCGCAAAGCCCGGAAACTGGGGTTTCAGCTGGTGGCTGCTTGAGTGTTTAGAAAACAATGGGTTGCATTCTGTTTGACCAGGGCTTACCTCAAGTACTCTATCCAAAGAAAAAAAAGAACAATCAGTGCAATCAGCAAAATTTGTACAG > NC_002947/5552812‑5553110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |