| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,610,582 | T→C | 20.2% | intergenic (‑17/‑55) | PP_4929 ← / → emrE | LysR family transcriptional regulator/small multidrug resistance protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,610,582 | 0 | T | C | 20.2% | 201.0 / 42.1 | 99 | intergenic (‑17/‑55) | PP_4929/emrE | LysR family transcriptional regulator/small multidrug resistance protein |
| Reads supporting (aligned to +/- strand): ref base T (41/37); new base C (11/9); total (52/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.02e-01 | |||||||||||
GGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGC > NC_002947/5610434‑5610730 | ggCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACtt < 1:1255722/150‑1 (MQ=255) cACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTa < 1:828050/150‑1 (MQ=255) ctgctgATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑cc < 2:984991/150‑1 (MQ=255) ctgATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCa > 2:1006214/1‑150 (MQ=255) cGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAg < 1:916780/150‑1 (MQ=255) gACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCaa > 2:747653/1‑150 (MQ=255) gACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCaa < 2:1736852/150‑1 (MQ=255) gggCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTc < 1:360752/150‑1 (MQ=255) ggCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCt > 1:860947/1‑150 (MQ=255) gCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTa < 1:1006214/150‑1 (MQ=255) cTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAg < 2:860947/150‑1 (MQ=255) cTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAg > 1:1744781/1‑150 (MQ=255) tCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTc > 1:1827235/1‑150 (MQ=255) tCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTc > 1:936757/1‑150 (MQ=255) aCGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAAGGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAg > 1:1999945/1‑150 (MQ=255) aCCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACgga > 1:953095/1‑150 (MQ=255) gAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCAt < 1:1356020/150‑1 (MQ=255) gAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCAt > 1:1996005/1‑150 (MQ=255) gcgcAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGa > 1:179839/1‑150 (MQ=255) gcgcAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGa > 2:2152358/1‑150 (MQ=255) gcAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAAt < 2:1744781/150‑1 (MQ=255) gcAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAAt < 2:224807/150‑1 (MQ=255) gcAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAAt > 2:250721/1‑150 (MQ=255) gcAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAAt > 1:2375210/1‑150 (MQ=255) aGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGTCCATCAACCTATCTCCCATATGGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGc > 1:557171/1‑150 (MQ=255) aGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGc < 1:747653/150‑1 (MQ=255) aGTTCTGCAACGCGCAGAAAGGTACGCAATCGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGc < 1:2065813/150‑1 (MQ=255) ttCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCt < 2:1259894/150‑1 (MQ=255) tGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTc < 1:1704525/104‑1 (MQ=255) tGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTc > 2:1704525/1‑104 (MQ=255) gCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTAtac < 1:2152358/150‑1 (MQ=255) cAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACgga > 1:2120428/1‑125 (MQ=255) cAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACgga < 2:2120428/125‑1 (MQ=255) gcgcAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATc < 2:1385573/87‑1 (MQ=255) gcgcAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATc > 1:1385573/1‑87 (MQ=255) gcAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTc < 2:1996005/150‑1 (MQ=255) aGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTACCTCCCCTATACAACGATGTTGTCGTCG‑TCCTCTCCAGTTTACGGTTAGGATGCCCTTGCAGTATCGGATGATCCTGCCATGAATGCCTATACCTACCTCGCCAtt < 2:2079155/150‑1 (MQ=255) ggTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTg < 1:2032491/150‑1 (MQ=255) tACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCt < 1:2252320/130‑1 (MQ=255) tACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCt > 2:2252320/1‑130 (MQ=255) tACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGcc < 2:1999945/150‑1 (MQ=255) cAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGCAATGAACTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCt > 2:2134623/1‑150 (MQ=255) aaTTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCta < 1:2196125/126‑1 (MQ=255) aaTTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCta > 2:2196125/1‑126 (MQ=255) aTTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCa < 1:460649/145‑1 (MQ=255) aTTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCa > 2:460649/1‑145 (MQ=255) ttCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGcc > 1:2258370/1‑119 (MQ=255) ttCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGcc < 2:2258370/119‑1 (MQ=255) ttCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCg > 2:116901/1‑150 (MQ=255) tCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCATGAACGGAGGATCCTGCCATGAATGc < 1:2130877/117‑1 (MQ=255) tCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGc > 2:2130877/1‑117 (MQ=255) cAAGGTTCCACTGCTCTGCAATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGaa < 1:116901/150‑1 (MQ=255) cAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGaa < 2:1827235/150‑1 (MQ=255) cAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGaa < 1:105788/150‑1 (MQ=255) aaGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAg > 1:1284020/1‑150 (MQ=255) aaGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAg > 2:2298646/1‑150 (MQ=255) aaGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCAAAg > 2:1857815/1‑150 (MQ=255) aGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAAt < 2:867961/112‑1 (MQ=255) aGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAAt > 1:867961/1‑112 (MQ=255) cACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGc > 1:390922/1‑150 (MQ=255) aCTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCAt > 1:1743096/1‑101 (MQ=255) aCTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCAt < 2:1743096/101‑1 (MQ=255) gCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACgga > 2:1055277/1‑86 (MQ=255) gCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACgga < 1:1055277/86‑1 (MQ=255) gCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAATGCGAGAGAACGCAGTAGCGAAGGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCAcc > 1:1489128/1‑150 (MQ=255) tCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAAc < 1:1998470/58‑1 (MQ=255) tCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAAc > 2:1998470/1‑58 (MQ=255) tCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGc > 2:1429025/1‑150 (MQ=255) ggCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCt > 2:1044825/1‑150 (MQ=255) ggCCATCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCt > 2:1643915/1‑150 (MQ=255) aTCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGAt < 1:1429025/150‑1 (MQ=255) aTCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGAt < 2:1284020/150‑1 (MQ=255) aTCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTc < 1:31845/147‑1 (MQ=255) aTCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTc > 2:31845/1‑147 (MQ=255) aTCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGAt < 2:2375210/150‑1 (MQ=255) tCAACCTATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATg > 1:1318654/1‑150 (MQ=255) cAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTAGCCAAAGCGATCTGTGCCGAAGTCATCGCCACCGCCTCGATGa > 2:1999257/1‑150 (MQ=255) aCCTATCTCCCATATCGATAGGTAATGACCTTACCCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGaa > 1:1502367/1‑150 (MQ=255) ccTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAgg > 2:2300471/1‑150 (MQ=255) tATCTCCCATATCGATAGGTAATGACCTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCg < 1:1447175/150‑1 (MQ=255) tcCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCg > 1:1804833/1‑137 (MQ=255) tcCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCg < 2:1804833/137‑1 (MQ=255) ccATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGaa < 1:1915045/117‑1 (MQ=255) ccATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGaa > 2:1915045/1‑117 (MQ=255) ccATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATc > 2:281261/1‑123 (MQ=255) ccATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATc < 1:281261/123‑1 (MQ=255) ccATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGaaa < 1:2300471/150‑1 (MQ=255) cATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTTCATCGAGGCGGTggcga < 2:936757/150‑5 (MQ=255) cATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAg < 1:250721/150‑1 (MQ=255) tAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGc > 2:863308/1‑150 (MQ=255) tAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGc > 1:1800246/1‑150 (MQ=255) ggTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCAc > 1:480665/1‑150 (MQ=255) ggTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCAc > 2:1701072/1‑150 (MQ=255) tAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGa > 1:107093/1‑144 (MQ=255) tAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGa < 2:107093/144‑1 (MQ=255) aaTGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGt > 1:1781121/1‑132 (MQ=255) aaTGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGt < 2:1781121/132‑1 (MQ=255) tGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTAtac < 2:2136160/73‑1 (MQ=255) tGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTAtac > 1:2136160/1‑73 (MQ=255) cTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGc > 1:748929/1‑150 (MQ=255) | GGCACTGCTGATCGCCGACTGGGCTTTGTGCTGCTCACGTGCCACCGCGGAGAACGAGCGCAGTTCTGCAACGCGCAGAAAGGTACGCAATTGTTCAAGGTTCCACTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTA‑CCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGC > NC_002947/5610434‑5610730 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |