| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,614,107 | A→T | 6.3% | intergenic (+38/+44) | PP_4933 → / ← hldE | hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,614,107 | 0 | A | T | 6.3% | 279.1 / 8.5 | 97 | intergenic (+38/+44) | PP_4933/hldE | hypothetical protein/bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (42/47); new base T (4/2); total (46/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.29e-01 | |||||||||||
AAGCAGCAGGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCCA > NC_002947/5613959‑5614254 | aaGCAGCAGGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGTTGGAGCGGGTaaa < 1:2284906/150‑1 (MQ=255)aaGCAGCAGGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTCACATCCCGAAAGCTTTCACCTGCTTGCTGAAGCGGGTaaa > 2:1006739/1‑150 (MQ=255) gcagcaGGGGTTGGTGGAAAGCAAGCCCGAACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAAcc < 2:1331225/150‑1 (MQ=255) cagGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGcc > 1:977279/1‑150 (MQ=255) agGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGccc < 1:58611/150‑1 (MQ=255) agGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGccc < 1:2171274/150‑1 (MQ=255) agGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGAGCCGAGTCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGccc < 1:24509/150‑1 (MQ=255) gTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCcagc > 2:1181901/1‑150 (MQ=255) ggtggAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCaga < 2:1885130/150‑1 (MQ=255) ggtggAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCaga < 1:554696/150‑1 (MQ=255) tggAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTACCCGCTCcagcaa < 2:1670303/147‑2 (MQ=255) tggAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTACCCGCTCcagcaa > 1:1670303/1‑146 (MQ=255) tggAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAgg > 1:1079178/1‑150 (MQ=255) gAAAGCAAGCTCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCTCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCTCCAGCAGAgggt < 2:1413686/150‑2 (MQ=255) aaaGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGgcc < 1:1583993/150‑1 (MQ=255) agcaagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGgccgc > 1:787497/1‑150 (MQ=255) aagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGa > 2:59459/1‑150 (MQ=255) aagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGa > 2:1113926/1‑150 (MQ=255) aagcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGa > 2:840273/1‑150 (MQ=255) agcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGaa < 2:900607/150‑1 (MQ=255) agcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGaa < 2:1930863/150‑1 (MQ=255) gcCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAg > 2:169391/1‑150 (MQ=255) cGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGa < 1:59459/150‑1 (MQ=255) gCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCATGTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAg < 2:1007046/150‑1 (MQ=255) tCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAAc > 2:1599962/1‑112 (MQ=255) tCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAAc < 1:1599962/112‑1 (MQ=255) cACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTACCCGCTCcagcaagcag > 1:1158638/1‑120 (MQ=38) cACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGGGCGGGTTTACCCGCTCcagcaagcag < 2:1158638/125‑6 (MQ=38) cTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATc < 2:1079178/150‑1 (MQ=255) ttGCAACGTTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCAGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCa < 1:1193380/150‑1 (MQ=255) cAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGtt < 1:91212/150‑1 (MQ=255) aaCGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTc > 1:2398972/1‑150 (MQ=255) aCGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCt > 2:891216/1‑150 (MQ=255) gCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTg < 1:1181901/150‑1 (MQ=255) gACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACGGGCTTGCTGCCGCGACTAAGCCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAAtttt > 1:782300/1‑150 (MQ=255) gACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCagag > 2:2074333/1‑105 (MQ=255) gACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCagag < 1:2074333/105‑1 (MQ=255) gACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAAtttt < 1:1435933/150‑1 (MQ=255) aaGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGCGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCTAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTtctc < 1:370033/150‑1 (MQ=255) aGGCGGGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCg > 2:603247/1‑150 (MQ=255) gcgcGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGAc < 2:2361818/150‑1 (MQ=255) gcgAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGc > 2:757326/1‑135 (MQ=255) gcgAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGc < 1:757326/135‑1 (MQ=255) gctgctGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCg > 1:1820021/1‑150 (MQ=255) gctgctGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTGGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCg > 2:995480/1‑150 (MQ=255) tgctgGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTg > 1:365316/1‑150 (MQ=255) aGCGGGCGCGGTCCTCGCTGAACAAGTGACATGCCGAAAGCTTTCACCTGCTTGCTGGAGCGGATACCGCTGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAg < 1:1957830/150‑1 (MQ=255) aGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAg < 2:787497/150‑1 (MQ=255) ggCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑t < 1:357202/150‑1 (MQ=255) cgcgGTCCTCGCTGAACAAGTGACCTCCCGAAAGCTTTCCCCTGCTTGCTGGAGCTGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGCCCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑Ttc < 1:1006739/150‑1 (MQ=255) cgcgGTCCTCGATGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCCATCACCCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑Ttc < 1:1731224/150‑1 (MQ=255) gcgGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑Ttct > 2:2277965/1‑150 (MQ=255) gTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGa < 1:355872/150‑1 (MQ=255) cTCGCTGAACATGTGACATCCCGAAAGCTTTCACCTGATTGCCGCAGAGGCCACGATATAGGCGGCAGTGCGTCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCa < 1:891216/150‑1 (MQ=255) cTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTAGAGCTG‑TTCTCGACCa > 2:1377078/1‑150 (MQ=255) gCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGcc > 1:862012/1‑150 (MQ=255) cTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGcc > 1:2173901/1‑124 (MQ=255) cTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGcc < 2:2173901/124‑1 (MQ=255) tGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCCGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGcccc > 1:1836001/1‑150 (MQ=255) cAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCa > 2:617407/1‑150 (MQ=255) aTCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCATAGGGCCGCCGAAGCGACCCCAATGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCa > 2:1544539/1‑139 (MQ=255) aTCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACg < 1:1052860/150‑1 (MQ=255) aTCCCGAAAGCTTTCACCTGCGTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAATGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCa < 1:1544539/139‑1 (MQ=255) cccGAAATCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTCCTAGCGGATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGt < 2:329308/150‑1 (MQ=255) cccGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑t < 2:366586/122‑1 (MQ=255) cccGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑t > 1:366586/1‑122 (MQ=255) ccGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTg > 1:2281244/1‑150 (MQ=255) gAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGt < 2:496697/71‑1 (MQ=255) gAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGt > 1:496697/1‑71 (MQ=255) gAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGCgcc > 2:2116819/1‑150 (MQ=255) aaaGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTgccg > 1:416207/1‑150 (MQ=255) aaaGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTgccg < 2:1820021/150‑1 (MQ=255) gCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCa > 1:1430914/1‑150 (MQ=255) gCTTTCACCTGCTTGCTGGAGCGCGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACACCAAGGTCAGATCAGTTCTTGCGCATTTTCGCGACAATCGCCGTGGTCGAGCTG‑TGCTCGACCAGCCCCAGCACCTTCACGGTgccgggg < 2:968151/150‑4 (MQ=255) tttCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATa > 2:671957/1‑150 (MQ=255) tttCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATa > 1:2245884/1‑150 (MQ=255) tttCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATa < 2:862012/150‑1 (MQ=255) ttCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAg < 2:2281244/150‑1 (MQ=255) aCCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCTGTTCTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGccc < 1:1377078/150‑1 (MQ=255) cggcttgctGGATCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCtt > 2:1903001/3‑150 (MQ=255) cTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCtt > 1:998737/1‑150 (MQ=255) ggcttgctGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTg > 2:1654214/2‑150 (MQ=255) gcttgctGGAGCGGGTAAACCCGCTTCAGTAGAGGGCCGCCGAAGCGACCCCACGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGa < 1:500291/150‑1 (MQ=255) gcttgctGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGa < 1:1113926/150‑1 (MQ=255) gcttgctGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTGGa < 1:2401698/150‑1 (MQ=255) tctgctGGGGCGGGTTTACCCGCTCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGAc > 2:659296/3‑150 (MQ=255) gctGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCtt > 1:1134960/1‑144 (MQ=255) gctGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCtt < 2:1134960/144‑1 (MQ=255) ctGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGa < 2:1238611/106‑1 (MQ=255) ctGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGa > 1:1238611/1‑106 (MQ=255) tGGGGCGGGTTTACCCGCTCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTtctc > 1:813011/1‑76 (MQ=37) tGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCACAAAGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACCatat > 2:89935/1‑150 (MQ=255) ggAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCG‑GCTGCTCCGCGAGCTGCCCCAGCACCTTCACGGTGCCGCCATCGCCCTTGCCGATATc > 2:1269404/1‑150 (MQ=255) gggCGGGTAAGCCGGCCCGAGCAGAGGGCCGCCGAAGCGAGCCCAAGGTCAGATCAGTTCTTGCGAATGTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCa < 2:977279/148‑1 (MQ=255) gAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAg < 1:1442278/47‑1 (MQ=255) gAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAg > 2:1442278/1‑47 (MQ=255) gCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGc < 1:1654214/150‑1 (MQ=255) cGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGca < 1:840273/150‑1 (MQ=255) tAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGcaccca > 2:1617317/1‑150 (MQ=255) | AAGCAGCAGGGGTTGGTGGAAAGCAAGCCCGCACGGGCGTCGCACTTGCAACGCTTTGGCGACAAGGCGCGAGCGCTGCTGGAGCGGGCGCGGTCCTCGCTGAACAAGTGACATCCCGAAAGCTTTCACCTGCTTGCTGGAGCGGGTAAACCCGCCCCAGCAGAGGGCCGCCGAAGCGACCCCAAGGTCAGATCAGTTCTTGCGAATTTTCTCGACAATCGCCGTGGTCGAGCTG‑TTCTCGACCAGCCCCAGCACCTTCACGGTGCCGCCATAGCCCTTGACGATATCAGCACCCA > NC_002947/5613959‑5614254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |