| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,618,162 | G→C | 5.0% | R181G (CGT→GGT) | wzy ← | O‑antigen polymerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,618,162 | 0 | G | C | 5.0% | 383.5 / 8.7 | 119 | R181G (CGT→GGT) | wzy | O‑antigen polymerase |
| Reads supporting (aligned to +/- strand): ref base G (50/63); new base C (4/2); total (54/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.09e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.73e-01 | |||||||||||
Only 100 of 121 total aligned reads displayed.
AGAGAACACCCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAG > NC_002947/5618013‑5618304 | agagAACACCCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACg > 2:566435/1‑150 (MQ=255)agagAACACCCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACg > 1:468911/1‑150 (MQ=255) agaACACCCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTc > 1:1072713/1‑150 (MQ=255) acCCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGa > 1:788658/1‑150 (MQ=255) acCCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGa < 1:229902/150‑1 (MQ=255) cGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGt < 2:2212808/150‑1 (MQ=255) cGGCTGTGGCGGTCAAGGAACCGCTACAGCGCAATCACCACGGCACTCACAAGTGCCAGCACCTCATCACGGCTCTGGGTGAGCATGGCGAACGCCCCCAGGCCAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGt < 2:389971/150‑1 (MQ=255) gCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTgg < 2:1197553/150‑1 (MQ=255) ggCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGt < 1:1997347/150‑1 (MQ=255) tCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGc < 1:566435/150‑1 (MQ=255) aCGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCTCTCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCAt < 1:1042523/150‑1 (MQ=255) aCGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCAt < 1:258121/150‑1 (MQ=255) aCGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGACTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGGGGTGGATCGTa‑gagaac > 2:1097674/1‑147 (MQ=255) ggAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTTGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATc < 1:81740/149‑1 (MQ=255) gAACCACAACGGCCCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCaa < 1:1432042/150‑1 (MQ=255) aCCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAaga < 2:2251977/150‑1 (MQ=255) acaACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCCTCAAGAGCa > 1:609122/1‑150 (MQ=255) acaACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCa > 1:2085526/1‑150 (MQ=255) acaACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCa > 1:2322287/1‑150 (MQ=255) cGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGc < 1:435027/150‑1 (MQ=255) ggCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGcc < 2:479781/150‑1 (MQ=255) tctcgaccaccacTGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCTCAAGGAAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCg < 1:158775/143‑1 (MQ=255) gcCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGaa > 1:690097/1‑150 (MQ=255) gcCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGaa < 2:304300/150‑1 (MQ=255) cATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAAcc > 2:1207695/1‑150 (MQ=255) tCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCAAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCaa > 1:701334/1‑150 (MQ=255) acGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa‑g < 2:2211842/120‑1 (MQ=255) acGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa‑g > 1:2211842/1‑120 (MQ=255) acGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACa > 1:2115640/1‑150 (MQ=255) gTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATaa < 1:1189110/150‑1 (MQ=255) gTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATaa < 2:1849840/150‑1 (MQ=255) gTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATaa < 2:690097/150‑1 (MQ=255) ccaaTCATCGGTGCCAGAACCGCACTACGGCTCTGGCTGAGCAAGGCGAAGGCCCCCGGGCAAGCCAGTGCCCCCAGCCACAACAACTGCAATCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATaa < 2:468911/148‑1 (MQ=255) aTCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa > 1:640420/1‑113 (MQ=255) aTCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa < 2:640420/113‑1 (MQ=255) tCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTC‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGccc < 2:1391063/150‑1 (MQ=255) aCCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCttg < 1:2202570/108‑3 (MQ=255) aCCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCttg > 2:2202570/1‑106 (MQ=255) ccAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCg < 1:1824057/107‑1 (MQ=255) aGTGCCAGTACCGACCCACGGCGCTTGCTTAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAgg < 1:1698283/150‑1 (MQ=255) aGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAgg > 2:42092/1‑150 (MQ=255) gCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATg < 1:1674978/150‑1 (MQ=255) cAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGc < 1:984538/106‑1 (MQ=255) aaCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTg < 2:1547599/150‑1 (MQ=255) aCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 2:1264255/150‑1 (MQ=255) aCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGACGTGGCTCGTA‑GAGCACCAAGAGCAAGGCCGAACCAATGCCCTAAGCCCCCAGCATGGGGTgg < 2:788658/150‑1 (MQ=255) aCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGCCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGCA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 1:1774815/150‑1 (MQ=255) gCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGat > 1:1046541/1‑150 (MQ=255) gCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGat < 1:2044672/150‑1 (MQ=255) ggCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGc < 1:1387186/150‑1 (MQ=255) ggCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGc < 2:2404757/150‑1 (MQ=255) tctGGGCGAGCACGGCGAAGGCCACCAGGGAAGCCAGTGCCGCCCGCCACAACACCTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAGGACCCCAGGATGGGGTGGGATATCTCGCCGa < 2:867844/150‑1 (MQ=255) tctGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACCGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGa < 1:1948428/150‑1 (MQ=255) gCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATAcc > 2:954071/1‑150 (MQ=255) gAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGc > 2:404542/1‑150 (MQ=255) gCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTAGGTGCAAC‑AGGGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGAGGGATATCTTGCCGATACCCGCCa > 1:150195/1‑150 (MQ=255) gCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCa > 2:841343/1‑150 (MQ=255) ggCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAAc > 2:455398/1‑95 (MQ=255) aGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATAtc > 1:2346772/1‑125 (MQ=255) ggCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAg > 1:486768/1‑150 (MQ=255) cccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAgg > 1:2391846/1‑81 (MQ=255) cccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAgg < 2:2391846/81‑1 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGc < 1:290830/139‑1 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGc > 2:290830/1‑139 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCaa < 2:486768/150‑1 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCaa > 2:1866340/1‑150 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATAGGTTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCaa > 1:1834220/1‑150 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCt < 1:663944/59‑1 (MQ=37) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCt > 2:663944/1‑59 (MQ=37) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGGTc < 1:2010974/59‑1 (MQ=255) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTc > 2:2010974/1‑59 (MQ=255) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGCGCTGGACCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCaaa > 1:2099070/1‑150 (MQ=255) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGccc < 1:360744/100‑1 (MQ=255) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGccc > 2:360744/1‑100 (MQ=255) ccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAg > 1:1263276/1‑150 (MQ=255) aGGCAAGCCAGTGGAGCCAGCCACAACAACTGCAAGGCACGTCCCCGAGGGGGCTCTTA‑GAGCATCAAGAGCAAGGCCGAACCAACGATATAAGCTCCCAGGATGGGGTGGGATATCTCGCCTATACCCGCCAGCCTGAACAGCAAAGgc < 1:1097674/150‑1 (MQ=255) aGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGgc < 2:1072713/150‑1 (MQ=255) aGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGgc < 1:1207695/150‑1 (MQ=255) gCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGgcgc > 1:1159007/1‑150 (MQ=255) aGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACg > 1:465045/1‑150 (MQ=255) gccgccAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCAcc < 2:2115640/150‑1 (MQ=255) gccagccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCa > 1:451011/1‑150 (MQ=255) ccagccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCAt < 2:1263276/150‑1 (MQ=255) cagccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATa < 1:841343/150‑1 (MQ=255) ccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGGA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGaa < 2:1046541/150‑1 (MQ=255) cacaACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAAc > 2:360121/1‑150 (MQ=255) aacaacTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTtg > 2:2006301/1‑150 (MQ=255) acaacTGCAAACCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTtga < 2:1622294/150‑1 (MQ=255) cTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTgatgat < 1:1866340/150‑1 (MQ=255) tacgaGCCACCTCGGCGACGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGatgatg > 2:1906281/5‑150 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg > 1:1435802/1‑81 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 2:1435802/81‑1 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGc > 1:1017197/1‑114 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGc < 2:1017197/114‑1 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTgatgat < 1:790753/149‑1 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTgatgat > 2:790753/1‑149 (MQ=255) cAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGga > 2:1418265/1‑150 (MQ=255) gaGCCACCTCGGCGACGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAAACGGGCGCTGGCACGCTGCACCCCATAGAACTTGATGATGgag > 1:126203/2‑150 (MQ=255) aaGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAgg > 1:912520/1‑116 (MQ=255) aaGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAgg < 2:912520/116‑1 (MQ=255) | AGAGAACACCCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCAAGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAG > NC_002947/5618013‑5618304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |