| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,618,170 | G→C | 6.2% | P178R (CCT→CGT) | wzy ← | O‑antigen polymerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,618,170 | 0 | G | C | 6.2% | 371.3 / 9.6 | 117 | P178R (CCT→CGT) | wzy | O‑antigen polymerase |
| Reads supporting (aligned to +/- strand): ref base G (47/62); new base C (5/3); total (52/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 119 total aligned reads displayed.
CCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGAT > NC_002947/5618022‑5618318 | ccGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAgg < 1:2014685/150‑1 (MQ=255)ccGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAgg > 2:435027/1‑150 (MQ=255) cGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGt < 2:2212808/150‑1 (MQ=255) cGGCTGTGGCGGTCAAGGAACCGCTACAGCGCAATCACCACGGCACTCACAAGTGCCAGCACCTCATCACGGCTCTGGGTGAGCATGGCGAACGCCCCCAGGCCAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGt < 2:389971/150‑1 (MQ=255) gCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTgg < 2:1197553/150‑1 (MQ=255) cTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGc < 1:220594/150‑1 (MQ=255) ggCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGt < 1:1997347/150‑1 (MQ=255) tCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGc < 1:566435/150‑1 (MQ=255) aCGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCTCTCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCAt < 1:1042523/150‑1 (MQ=255) aCGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCAt < 1:258121/150‑1 (MQ=255) aCGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGACTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGGGGTGGATCGTa‑gagaac > 2:1097674/1‑147 (MQ=255) ggAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTTGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATc < 1:81740/149‑1 (MQ=255) ggAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTTGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATc > 2:81740/1‑149 (MQ=255) gAACCACAACGGCCCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCa‑a < 1:1432042/150‑1 (MQ=255) aCCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑aga < 2:2251977/150‑1 (MQ=255) acaACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCCTCA‑AGAGCa > 1:609122/1‑150 (MQ=255) cGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGc < 1:435027/150‑1 (MQ=255) ggCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGcc < 2:479781/150‑1 (MQ=255) tctcgaccaccacTGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCTCAAGGAAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCg < 1:158775/143‑1 (MQ=255) gcCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGaa < 2:304300/150‑1 (MQ=255) gcCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGaa > 1:690097/1‑150 (MQ=255) cATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAAcc > 2:1207695/1‑150 (MQ=255) tCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCAAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCaa > 1:701334/1‑150 (MQ=255) acGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa‑g < 2:2211842/120‑1 (MQ=255) acGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa‑g > 1:2211842/1‑120 (MQ=255) acGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACa > 1:1849840/1‑150 (MQ=255) acGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACa > 1:2115640/1‑150 (MQ=255) gTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATaa < 2:1849840/150‑1 (MQ=255) gTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATaa < 2:690097/150‑1 (MQ=255) ccaaTCATCGGTGCCAGAACCGCACTACGGCTCTGGCTGAGCAAGGCGAAGGCCCCCGGGCAAGCCAGTGCCCCCAGCCACAACAACTGCAATCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATaa < 2:468911/148‑1 (MQ=255) aTCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa < 2:640420/113‑1 (MQ=255) aTCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTa > 1:640420/1‑113 (MQ=255) tCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTC‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGccc < 2:1391063/150‑1 (MQ=255) aCCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCttg < 1:2202570/108‑3 (MQ=255) aCCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCttg > 2:2202570/1‑106 (MQ=255) ccAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCg > 2:1824057/1‑107 (MQ=255) ccAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCg < 1:1824057/107‑1 (MQ=255) ccAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCa > 2:1127143/1‑150 (MQ=255) aGTGCCAGTACCGACCCACGGCGCTTGCTTAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAgg < 1:1698283/150‑1 (MQ=255) aGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAgg > 2:42092/1‑150 (MQ=255) gTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGa > 1:2404757/1‑150 (MQ=255) ccAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATgg < 2:2085526/150‑1 (MQ=255) aaCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTg < 2:1547599/150‑1 (MQ=255) aCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 1:1127143/150‑1 (MQ=255) aCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 2:1264255/150‑1 (MQ=255) aCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGACGTGGCTCGTA‑GAGCACCA‑AGAGCAAGGCCGAACCAATGCCCTAAGCCCCCAGCATGGGGTgg < 2:788658/150‑1 (MQ=255) aCCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGCCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGCA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 1:1774815/150‑1 (MQ=255) gCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGat < 1:2044672/150‑1 (MQ=255) gCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGat > 1:1046541/1‑150 (MQ=255) ggCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGc < 2:2404757/150‑1 (MQ=255) ggCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGc < 1:1387186/150‑1 (MQ=255) tctGGGCGAGCACGGCGAAGGCCACCAGGGAAGCCAGTGCCGCCCGCCACAACACCTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAGGACCCCAGGATGGGGTGGGATATCTCGCCGa < 2:867844/150‑1 (MQ=255) tctGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACCGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGa < 1:1948428/150‑1 (MQ=255) gCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATAcc > 2:954071/1‑150 (MQ=255) gCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTAGGTGCAAC‑‑AGGGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGAGGGATATCTTGCCGATACCCGCCa > 1:150195/1‑150 (MQ=255) gCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCa > 2:841343/1‑150 (MQ=255) ggCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAAc > 2:455398/1‑95 (MQ=255) ggCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAAc < 1:455398/95‑1 (MQ=255) aGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATAtc > 1:2346772/1‑125 (MQ=255) aGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATAtc < 2:2346772/125‑1 (MQ=255) ggCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAg > 1:486768/1‑150 (MQ=255) cccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAgg > 1:2391846/1‑81 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGc < 1:290830/139‑1 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGc > 2:290830/1‑139 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATAGGTTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCaa > 1:1834220/1‑150 (MQ=255) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCt < 1:663944/59‑1 (MQ=37) ccccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACCTCGGCGACGTGGCt > 2:663944/1‑59 (MQ=37) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGGTc < 1:2010974/59‑1 (MQ=255) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTc > 2:2010974/1‑59 (MQ=255) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGCGCTGGACCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCaaa > 1:2099070/1‑150 (MQ=255) cccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGccc > 2:360744/1‑100 (MQ=255) ccAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAg > 1:1263276/1‑150 (MQ=255) aGGCAAGCCAGTGGAGCCAGCCACAACAACTGCAAGGCACGTCCCCGAGGGGGCTCTTA‑GAGCATCA‑AGAGCAAGGCCGAACCAACGATATAAGCTCCCAGGATGGGGTGGGATATCTCGCCTATACCCGCCAGCCTGAACAGCAAAGgc < 1:1097674/150‑1 (MQ=255) aGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGgc < 2:1072713/150‑1 (MQ=255) aGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGgc < 1:1207695/150‑1 (MQ=255) gCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGgcgc > 1:1159007/1‑150 (MQ=255) aaGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCAc > 2:1338177/1‑150 (MQ=255) aGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACg > 1:465045/1‑150 (MQ=255) gccagccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCa > 1:451011/1‑150 (MQ=255) ccagccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCAt < 2:1263276/150‑1 (MQ=255) ccagccaCAACAACTGCAAGCCACGTAGCCGACATGGCTCGAA‑CA‑AGTCACCTAGGAAGGCCGAACCAAGTGCATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCAt > 1:1622294/1‑150 (MQ=255) cagccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATa < 1:841343/150‑1 (MQ=255) ccaCAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGGA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGaa < 2:1046541/150‑1 (MQ=255) cacaACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAAc > 2:360121/1‑150 (MQ=255) aacaacTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTtg > 2:2006301/1‑150 (MQ=255) aacaacTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTtg > 1:1379483/1‑150 (MQ=255) acaacTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTtga < 1:954071/150‑1 (MQ=255) acaacTGCAAACCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTtga < 2:1622294/150‑1 (MQ=255) caacTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 2:596635/85‑1 (MQ=255) tacgaGCCACCTCGGCGACGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGatgatg > 2:1906281/5‑150 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg < 2:1435802/81‑1 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTgg > 1:1435802/1‑81 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGc < 2:1017197/114‑1 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGc > 1:1017197/1‑114 (MQ=255) tGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTgatgat < 1:790753/149‑1 (MQ=255) gaGCCACCTCGGCGACGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAAACGGGCGCTGGCACGCTGCACCCCATAGAACTTGATGATGgag > 1:126203/2‑150 (MQ=255) aaGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAgg > 1:912520/1‑116 (MQ=255) aaGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAgg < 2:912520/116‑1 (MQ=255) cGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAAGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCg > 1:1774953/1‑150 (MQ=255) aGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCAGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCACATAGAACTTGATGATGGAGACCAACGCAGCGAt < 2:2099070/150‑1 (MQ=255) | CCGGCTGTGGCGGTCACGGAACCACAACGGCGCCATCACCACGGTAATCACCAGTGCCAGAACCGCACCACGGCTCTGGCTGAGCATGGCGAAGGCCCCCAGGCAAGCCAGTGCCGCCAGCCACAACAACTGCAAGCCACGTCGCCGAGGTGGCTCGTA‑GAGCATCA‑AGAGCAAGGCCGAACCAATGACATAAGCCCCCAGGATGGGGTGGGATATCTCGCCGATACCCGCCAGCCTGAACAGCAAAGGCGCACGCTGCACCCCATAGAACTTGATGATGGAGACCAACGCAGCGAT > NC_002947/5618022‑5618318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |