| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,657,945 | T→G | 6.3% | intergenic (‑200/‑52) | tktA ← / → sahR | transketolase A/methionine metabolism transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,657,945 | 0 | T | G | 6.3% | 378.5 / 13.7 | 128 | intergenic (‑200/‑52) | tktA/sahR | transketolase A/methionine metabolism transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base T (63/57); new base G (5/3); total (68/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 | |||||||||||
Only 100 of 130 total aligned reads displayed.
TCGCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTG > NC_002947/5657800‑5658089 | tCGCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACttttt < 2:312215/150‑1 (MQ=255) gCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGa > 2:526284/1‑150 (MQ=255) aCTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATAtt < 1:1919402/150‑1 (MQ=255) cTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTg > 1:2039270/1‑150 (MQ=255) tGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCGGCTCATCGCCAATATCAAAAAGTTTTGATATTgg < 1:1001460/150‑1 (MQ=255) ggggCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGAGACTCGGGGCTCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGcc > 2:1288801/1‑150 (MQ=255) ggCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCtt > 2:504050/1‑150 (MQ=255) gcgcTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGTCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTg > 1:1741631/1‑150 (MQ=255) gcgcTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTg > 2:303132/1‑150 (MQ=255) ttGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAg > 1:1767678/1‑150 (MQ=255) tGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGTCTCGGGGCGCCACAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTatg < 2:926190/150‑3 (MQ=255) tGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAgg < 1:526284/150‑1 (MQ=255) gggCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGc > 1:352692/1‑150 (MQ=255) ggCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCa > 2:2333461/1‑150 (MQ=255) gCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAgg > 2:1196328/1‑146 (MQ=255) gCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCAt > 1:277017/1‑150 (MQ=255) gCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCAt > 1:1473670/1‑150 (MQ=255) cAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTTGCCTTGCTAGAGCATc > 2:1177082/1‑150 (MQ=255) aaaCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCCAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTATGGCATCg > 2:539236/1‑150 (MQ=255) aaaCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCg > 1:1300873/1‑150 (MQ=255) aaCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGa > 1:1726890/1‑150 (MQ=255) aaCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGa > 2:419300/1‑150 (MQ=255) aCATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGAt < 1:1139283/150‑1 (MQ=255) cATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATg < 2:1866875/150‑1 (MQ=255) ttAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCt < 1:1204122/150‑1 (MQ=255) ttAAGCGACAAGCGGCGGCTTTAAGCCTCAAGTGAAGAAGCAGAGCGCGCCTCGGGGTGCTCAAAATCGTCTAACTTGAGGATTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCTTTGCTAGGGCATCGATGCCt < 2:1089093/150‑1 (MQ=255) aagcgccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGt < 1:1698977/150‑1 (MQ=255) agcgccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTc < 2:352692/150‑1 (MQ=255) cgccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTa < 1:1345994/150‑1 (MQ=255) gccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGa > 1:153333/1‑139 (MQ=255) ccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGa < 1:2333461/150‑1 (MQ=255) ccaagcgccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGa < 2:2223983/150‑1 (MQ=255) ccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCt > 2:506279/1‑136 (MQ=255) ccGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCt < 1:506279/136‑1 (MQ=255) cGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGAGATGCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTgccgcc > 1:1171716/1‑150 (MQ=255) cTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCa > 1:1146165/1‑150 (MQ=255) aGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGaag < 1:977011/150‑2 (MQ=255) gCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAAAGTTTTGATATTgg < 2:1402322/104‑1 (MQ=255) gCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAAAGTTTTGATATTgg > 1:1402322/1‑104 (MQ=255) ccGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCt > 1:1422728/1‑150 (MQ=255) gCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCtgc < 1:1583721/150‑1 (MQ=255) aaCTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAgg > 1:1178898/1‑109 (MQ=255) aaCTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCtgcgt < 1:1923170/150‑1 (MQ=255) cTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCACCATGAATCtgcgtgc < 1:1288801/150‑1 (MQ=255) tGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGaa > 2:744059/1‑140 (MQ=255) tGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGaa < 1:744059/140‑1 (MQ=255) tGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCtgcgtgcg > 2:2066323/1‑150 (MQ=255) agaagCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCaa < 2:1741631/150‑1 (MQ=255) gaagCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAATCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCt < 1:1068258/114‑1 (MQ=255) gaagCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCt > 2:1068258/1‑114 (MQ=255) gCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGa > 2:2299593/1‑150 (MQ=255) gCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGa > 2:940301/1‑150 (MQ=255) gagCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATcc < 1:504050/150‑1 (MQ=255) gcgcGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATcccc < 2:2042048/150‑1 (MQ=255) cgACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAg < 2:1473670/150‑1 (MQ=255) gACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGc > 1:3992/1‑150 (MQ=255) tCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAAc < 1:1831694/150‑1 (MQ=255) ggggCGCCCCAACGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAAGATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAAcgc < 1:2299593/150‑1 (MQ=255) ggCGCCCCAAAGCGTGTAACTTGCGGCTTTGGGCTTGCAGCTCATAGCCAATAGCAAAACTTTTTGATATTGGCCTTACTAGGACATCGATTCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGAAACGCGa > 1:1156525/1‑150 (MQ=255) cccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACAt > 2:1515018/1‑150 (MQ=255) cccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACAt > 2:2023721/1‑150 (MQ=255) ccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACAtt < 2:931971/150‑1 (MQ=255) ccAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACAtt < 1:228126/150‑1 (MQ=255) cAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAg < 1:478487/75‑1 (MQ=255) cAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAg > 2:478487/1‑75 (MQ=255) cAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGATTCTCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTg < 2:1171716/150‑1 (MQ=255) aaaGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCtgcgt < 2:828858/116‑1 (MQ=255) aaaGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCtgcgt > 1:828858/1‑116 (MQ=255) aaaGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTgg < 2:277017/150‑1 (MQ=255) aaaGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTgg < 2:2039270/150‑1 (MQ=255) tgtAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGccc > 1:91437/1‑150 (MQ=255) gtAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCt > 1:253770/1‑150 (MQ=255) aaCTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTTGCAGCCCtgt > 2:145661/1‑150 (MQ=255) aaCTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCtgt < 1:2158127/150‑1 (MQ=255) aaCTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCtgt < 1:2157725/150‑1 (MQ=255) ttGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCa > 2:830345/1‑150 (MQ=255) ttGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCa > 2:1630244/1‑150 (MQ=255) gCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCg > 1:2285001/1‑150 (MQ=255) cTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGa < 1:863473/150‑1 (MQ=255) ttGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTgg < 1:2051087/146‑1 (MQ=255) ttGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAt > 1:65112/1‑150 (MQ=255) ttGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAt < 2:1767678/150‑1 (MQ=255) gCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAtgcgct > 1:7027/1‑150 (MQ=255) cTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCACTGTGCAAAGCCAGTGGCGAtgcgctg > 2:1101581/1‑150 (MQ=255) aTCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGAtgcgctgcgc < 2:1152545/150‑1 (MQ=255) cGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCt > 2:436990/1‑150 (MQ=255) gCCAATATCAAAAAGTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTGGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTg > 2:2359481/1‑150 (MQ=255) gCCAATATCAAAAAGTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTg > 1:1983864/1‑150 (MQ=255) ccAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATc > 2:1543498/1‑89 (MQ=255) ccAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATc < 1:1543498/89‑1 (MQ=255) ccAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGa > 2:2125999/1‑150 (MQ=255) cAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAAcgc > 1:279427/1‑100 (MQ=255) cAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAAcgc < 2:279427/100‑1 (MQ=255) cAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCt > 1:2228425/1‑117 (MQ=255) cAATATCAAAAAGTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGaa < 2:1983864/150‑1 (MQ=255) aaTATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGa > 2:1304483/1‑53 (MQ=255) aaTATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAAc > 1:412459/1‑150 (MQ=255) cAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTAtt < 2:65112/150‑1 (MQ=255) aaaaCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTg > 2:1546986/1‑150 (MQ=255) aaaaCTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTg > 2:830564/1‑150 (MQ=255) | TCGCCCACTGGGGGCGCTTGGGGCAAACATTTAAGCGCCAAGCGCCGGCTTTAAGCCGCAACTGAAGAAGCAGAGCGCGACTCGGGGCGCCCCAAAGCGTGTAACTTGAGGCTTTCGGCTTGCAGCTCATCGCCAATATCAAAACTTTTTGATATTGGCCTTGCTAGGGCATCGATGCCTGTCTAGACTGCCGCCCCATGAATCTGCGTGCGCAATCGATCCCCGAGCAACGCGAAACATTGGCAGCCCTGTGCAAAGCCAGTGGCGATGCGCTGCGCCTGAACGTATTG > NC_002947/5657800‑5658089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |