| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,706,643 | T→A | 8.4% | L202Q (CTG→CAG) | PP_5009 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,706,643 | 0 | T | A | 8.4% | 361.5 / 19.1 | 120 | L202Q (CTG→CAG) | PP_5009 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (56/53); new base A (4/6); total (60/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.33e-01 | |||||||||||
Only 100 of 123 total aligned reads displayed.
CGGGCTCGACGAAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGAC > NC_002947/5706494‑5706791 | cGGGCTCGACGAAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCt < 1:1650272/150‑1 (MQ=255) ggCTCGACGAAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGAGGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTgg < 1:446285/150‑1 (MQ=255) cTCGACGAAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCt < 2:89658/150‑1 (MQ=255) cTCGACGAAGACAGCCAAGACTCGCACTCGCTCTATCTCGATCACACTATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCt < 2:1832340/150‑1 (MQ=255) cTCGACAAAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGACCCTCCCGCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCt < 1:163978/150‑1 (MQ=255) tCGACGAAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAACGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTg > 2:1067620/1‑150 (MQ=255) gaAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCt < 1:2035951/140‑1 (MQ=255) gaAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCt > 2:2035951/1‑140 (MQ=255) aGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGc < 2:586103/150‑1 (MQ=255) aGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGc < 1:438202/150‑1 (MQ=255) aGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGATGCATTGCTCGAGAACCTCCCGCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCAGGCTGTCgtgta < 2:316835/150‑5 (MQ=255) aCAGCCAAGTCTCGCGCATACTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGa < 2:1581365/150‑1 (MQ=255) ccAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATa < 2:1555396/148‑1 (MQ=255) ccAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATa > 1:1555396/1‑148 (MQ=255) gTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTc < 1:2049278/150‑1 (MQ=255) cATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCgg > 1:1531655/1‑150 (MQ=255) ctctGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACg > 2:1809826/1‑150 (MQ=255) tctGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCAGGCTGTCgtg > 2:1909978/1‑123 (MQ=255) ggcttgAGCTGACCATCAAGGCTGCATTACTCGAGAACCGCCCGGGCCAAGGCCTGGCAGATGATGCAAAGGATGCAAGGTACGCCCTGCTCGACGGGGTACACGACCGCATGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATg < 1:539259/150‑1 (MQ=255) gctggAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGAt < 1:331899/126‑1 (MQ=255) tggAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCg > 1:1006256/1‑150 (MQ=255) ggAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGTGACAAGTCACGCTCGGAACG‑GATG‑GCgg < 1:675635/150‑1 (MQ=255) gAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCggg < 1:896490/150‑1 (MQ=255) atcATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATa < 2:1273404/115‑1 (MQ=255) acCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAg < 2:289398/121‑1 (MQ=255) acCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAg > 1:289398/1‑121 (MQ=255) acCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGcacac > 1:441087/1‑150 (MQ=255) ccATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGcacaca < 1:1067620/150‑1 (MQ=255) cATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCacacac > 2:506018/1‑150 (MQ=255) aTCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCacacac > 2:1014010/1‑149 (MQ=255) aTCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCacacac < 1:1014010/149‑1 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGtt > 1:1189758/1‑150 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGtt > 2:1519186/1‑150 (MQ=255) aaGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGtt > 1:847831/1‑150 (MQ=255) aGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTa < 1:1888262/150‑1 (MQ=255) aGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTa > 2:2085012/1‑150 (MQ=255) ggCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCGGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTAc > 1:663428/1‑150 (MQ=255) cATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCt > 2:2103054/1‑92 (MQ=255) aTTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGTGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTAcc < 1:442913/150‑1 (MQ=255) tCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATc > 1:2116535/1‑150 (MQ=255) tCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATc > 2:2255369/1‑150 (MQ=255) agaACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTAt < 2:1189758/150‑1 (MQ=255) gaACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTAtt > 1:622666/1‑150 (MQ=255) cctccctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCt > 1:138434/1‑150 (MQ=255) cctccctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCt > 1:138830/1‑150 (MQ=255) cctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCg > 1:644102/1‑112 (MQ=255) cctcGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCg < 2:644102/112‑1 (MQ=255) gCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGcac > 2:1316042/1‑114 (MQ=255) gCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGcac < 1:1316042/114‑1 (MQ=255) gCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATcacca > 2:727574/1‑150 (MQ=255) ccAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAgg > 1:1789004/1‑77 (MQ=255) cAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGt < 1:2112452/86‑1 (MQ=255) cAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGt > 2:2112452/1‑86 (MQ=255) gCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTg < 2:480479/150‑1 (MQ=255) gCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTg > 1:1343535/1‑150 (MQ=255) cTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTAcc > 2:2020825/1‑117 (MQ=255) cTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTAcc < 1:2020825/117‑1 (MQ=255) tGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgca > 2:1313495/1‑150 (MQ=255) gCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTg > 2:618460/1‑145 (MQ=255) gCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTg < 1:618460/145‑1 (MQ=255) aGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGACACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccg > 1:1988433/1‑150 (MQ=255) gatgCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccgcaac < 2:2347199/150‑1 (MQ=255) gatgCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccgcaac < 2:847831/150‑1 (MQ=255) gatgCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccgcaac < 1:299258/150‑1 (MQ=255) gatgCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaaccgcaac > 1:2292461/1‑150 (MQ=255) tgCAACAGCAGTAATGTACTCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTC‑CAACGCAATG‑GCGGGGCACACACCGTTACCCTCCCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCt < 1:1374881/150‑1 (MQ=255) gCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTg > 2:1258737/1‑150 (MQ=255) gaaaaGCTGCAATGTACGCCCTGATCGACCGGGTACACGACAGCCGGCCTGTCGAGGCTATACAAGGCTCGGTGTGAACG‑GATG‑GCGGGGCGCACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTgg < 2:1006256/149‑1 (MQ=255) aaaaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCtc < 1:588394/121‑1 (MQ=255) aaaaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCtc > 2:588394/1‑121 (MQ=255) aaaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACT‑GGGG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCATATGTGGCAACCGCAACCTGGtt > 1:772712/1‑150 (MQ=255) aaaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTgg > 2:839957/1‑134 (MQ=255) aaaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTgg < 1:839957/134‑1 (MQ=255) aaGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCT‑GGGACA‑GCTGTGCGAAGGACTCACCTTTACGCTACCGGATCTATTGATCACAAGCATAAGGGGGAAGCACAACCTGGTTc > 1:43978/1‑150 (MQ=255) tGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCtgcaatgca < 1:1279258/150‑1 (MQ=255) gTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCtgcaatgcaa < 1:663095/150‑1 (MQ=255) tACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAg < 1:1809826/150‑1 (MQ=255) tGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGcg < 2:441087/150‑1 (MQ=255) ccGGGGTACACGACAGCCTTGCTGTCGTGGCGATACAAGTCACGCTCGGAACG‑GATA‑GCTGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCTCAAGTGGCAACCGCAACCTGTTTCTGCAATGCAAGCCCTGcggttcgg < 2:663428/149‑1 (MQ=255) cGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGcggttcggt < 1:2233059/150‑1 (MQ=255) tcgcctcGACAGCCAGGCTGTCGTGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTAGTTCTGCAATGCAAGCCCTGCGgttcggttcg > 1:1412502/7‑150 (MQ=255) cctcGACAGCCAGGCTGTCGTGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGgcaac < 2:384153/103‑1 (MQ=255) acGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGcacac > 2:1281586/1‑59 (MQ=255) acGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGcacac < 1:1281586/59‑1 (MQ=255) cGACAGCCTGGCTGCCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGCCACACACCGTTACCCTACCGGATCTATTGCTCATCCCCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCa < 2:772712/150‑1 (MQ=255) gACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGc < 2:704545/127‑1 (MQ=255) gACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCa < 1:1074654/149‑1 (MQ=255) gACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCa > 2:1074654/1‑149 (MQ=255) gACAGCCAGGCTGTCGTGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTAGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCAt < 2:1412502/150‑1 (MQ=255) aGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCATTCGCGCATCACCCCCATCGACAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTc < 1:2100343/150‑1 (MQ=255) ccTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTAcc < 2:1790859/66‑1 (MQ=255) ccTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTAcc > 1:1790859/1‑66 (MQ=255) ccTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCAC‑AGTTGCCACCGCAAACCGGGTCTTCAATGGAAGCCCTTCGGTTTCGTTTGTCGCCATGTCCAc > 1:256615/1‑150 (MQ=255) cTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTg > 1:1371690/1‑75 (MQ=255) cTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTg < 2:1371690/75‑1 (MQ=255) cTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCGCAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGAc < 2:1181504/150‑1 (MQ=255) cTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGtt < 1:751820/108‑1 (MQ=255) cTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGAc > 2:592258/1‑150 (MQ=255) cTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGAc < 2:622666/150‑1 (MQ=255) cTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGAc > 2:1350979/1‑150 (MQ=255) | CGGGCTCGACGAAGACAGCCAAGTCTCGCGCATGCTCTGGCTGGAGCACACCATCAAGGCTGCATTGCTCGAGAACCTCCCTCGCCAAGGCCTGGCAGATGATGCAAAAGCTGCAATGTACGCCCTGCTCGACGGGGTACACGACAGCCTGGCTGTCGAGGCGATACAAGTCACGCTCGGAACG‑GATG‑GCGGGGCACACACCGTTACCCTACCGGATCTATTGCTCATCACCACAAGTGGCAACCGCAACCTGGTTCTGCAATGCAAGCCCTGCGGTTCGGTTCGTCGCCATGTCGAC > NC_002947/5706494‑5706791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |