BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,742,158	T→C	6.1%	S18G (AGT→GGT)	PP_5039 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,742,158	0	T	C	6.1%	354.9 / 5.0	115	S18G (AGT→GGT)	PP_5039	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (52/55); new base C (2/6); total (54/61)
Fisher's exact test for biased strand distribution p-value = 2.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 117 total aligned reads displayed.

GCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGATGTCGA  >  NC_002947/5742009‑5742307

 cccAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTg                                                                                                                                                      <  2:587157/150‑1 (MQ=255)

  ccagccagCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     >  2:108607/1‑150 (MQ=255)

  ccagccagCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     >  2:484017/1‑150 (MQ=255)

  ccagccagCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     >  1:2063385/1‑150 (MQ=255)

    agccagccCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTg                                                                                                                                                   <  1:1380569/150‑1 (MQ=255)

     gccagccCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGc                                                                                                                                                  <  2:2063385/150‑1 (MQ=255)

        agccCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGcccc                                                                                                                                               >  2:2336822/1‑150 (MQ=255)

        agccCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGccca                                                                                                                                               <  2:1022728/150‑2 (MQ=255)

           ccTGCGGGGTTTGCTGCCACTCTTCGAGCCCACACGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAAc                                                                                                                                            <  2:493704/150‑1 (MQ=255)

             tGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCg                                                                                                                                          >  1:1068448/1‑150 (MQ=255)

               cGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGaa                                                                                                                                        <  1:431904/150‑1 (MQ=255)

               cGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGaa                                                                                                                                        <  2:1180951/150‑1 (MQ=255)

                  ggTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     >  2:1284055/1‑150 (MQ=255)

                  ggTTTGCTACCACTCTTCGAGCCCACCCGCCAGGGCGTGTTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     >  2:1494447/1‑150 (MQ=255)

                    tttGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAaccacc                                                                                                                                   <  2:599414/150‑1 (MQ=255)

                     ttGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGGGAGTGCACTGGTGCCCCAACCGAAccacca                                                                                                                                  <  1:64523/150‑1 (MQ=255)

                      tgctgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAAAAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGTACTGGTGCCCCAACCGAACCACCAt                                                                                                                                 <  1:2202610/150‑1 (MQ=255)

                       gctgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCAtt                                                                                                                                <  1:318359/150‑1 (MQ=255)

                        ctgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACCGCGTCCACGCCTCCGCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTc                                                                                                                               >  2:1270695/1‑150 (MQ=255)

                         tgcCACTCTTCGAGCCCGCCCGCCAGGGCGTGGTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTcc                                                                                                                              <  2:1857186/150‑1 (MQ=255)

                         tgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTcc                                                                                                                              >  1:1691256/1‑150 (MQ=255)

                          gcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCa                                                                                                                             <  1:2263667/150‑1 (MQ=255)

                            cACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGc                                                                                                                           >  2:1795724/1‑150 (MQ=255)

                              ctctTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccag                                                                                                                                              >  2:668553/1‑127 (MQ=255)

                              ctctTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccag                                                                                                                                              <  1:668553/129‑3 (MQ=255)

                               tctTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAAc                                                                                                                        >  1:49679/1‑150 (MQ=255)

                               tctTCGAGCCCACCCGCCAGGGCGGGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAAc                                                                                                                        >  1:1881325/1‑150 (MQ=255)

                                  tCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGc                                                                                                                     >  2:1538810/1‑150 (MQ=255)

                                    gAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTg                                                                                                                   >  2:1350147/1‑150 (MQ=255)

                                    gAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTg                                                                                                                   >  1:2137073/1‑150 (MQ=255)

                                       cccACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCa                                                                                                                >  2:2222561/1‑150 (MQ=255)

                                        ccACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAAcc                                                                                                                                           <  2:1965506/122‑1 (MQ=255)

                                        ccACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCaa                                                                                                               <  1:892623/150‑1 (MQ=255)

                                         cACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     <  2:110491/111‑1 (MQ=255)

                                         cACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     >  1:110491/1‑111 (MQ=255)

                                         cACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAg                                                                                                              >  2:2284582/1‑150 (MQ=255)

                                          aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             <  1:439696/150‑1 (MQ=255)

                                          aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             >  2:571119/1‑150 (MQ=255)

                                          aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             >  1:2149883/1‑150 (MQ=255)

                                          aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             >  1:352977/1‑150 (MQ=255)

                                               ccAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATGCCAGCAACGGCTGCCAAGGTGCGa                                                                                                        <  2:419214/150‑1 (MQ=255)

                                                  gggCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCa                                                                                                     >  1:952139/1‑150 (MQ=255)

                                                     cGTGCTCGACCAGGTCGCCAAACAGTGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGa                                                                                                  >  2:866373/1‑150 (MQ=255)

                                                       tGCTCGACCAGGTCGCCAAACAGTGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACt                                                                                                <  1:866373/150‑1 (MQ=255)

                                                        gCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAg                                                                                                              >  1:1470364/1‑135 (MQ=255)

                                                        gCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccaggc                                                                                                                                            <  1:1477720/105‑5 (MQ=255)

                                                        gCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccaggc                                                                                                                                            >  2:1477720/1‑101 (MQ=255)

                                                             aCCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGAc                                                                                                 <  2:1621091/143‑1 (MQ=255)

                                                             aCCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTcc                                                                                          >  1:1646099/1‑150 (MQ=255)

                                                             aCCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTcc                                                                                          <  2:2385013/150‑1 (MQ=255)

                                                              ccAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCaa                                                                                                                                             <  1:554802/98‑1 (MQ=255)

                                                              ccAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCaa                                                                                                                                             >  2:554802/1‑98 (MQ=255)

                                                               cAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCCACGGCTGCCAAGGTGCGAGCATGACTTACTCCtt                                                                                        <  2:760728/150‑1 (MQ=255)

                                                                aGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTtg                                                                                       >  2:967828/1‑150 (MQ=255)

                                                                aGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCGCGCAAGGTGCGAGCATGACTTACTCCTtg                                                                                       <  1:1270695/150‑1 (MQ=255)

                                                                  gTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTtgtg                                                                                     <  1:571119/150‑1 (MQ=255)

                                                                     gcaaaaCAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     <  1:2088873/96‑1 (MQ=255)

                                                                      ccAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTcc                                                                                          >  2:2023336/1‑141 (MQ=255)

                                                                      ccAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTcc                                                                                          <  1:2023336/141‑1 (MQ=255)

                                                                          aCAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCgg                                                                             <  1:2336822/150‑1 (MQ=255)

                                                                           cAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGt                                                                            <  1:1596319/150‑1 (MQ=255)

                                                                           cAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATCCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGt                                                                            <  1:2243112/150‑1 (MQ=255)

                                                                             gcgcATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGa                                                                          <  1:2284582/150‑1 (MQ=255)

                                                                                   gggCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGt                                                                                                            <  2:360164/110‑1 (MQ=255)

                                                                                   gggCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGt                                                                                                            >  1:360164/1‑110 (MQ=255)

                                                                                    ggCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCCGTTCTCTAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTc                                                                   <  1:2222561/150‑1 (MQ=255)

                                                                                            cATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTctt                                                           >  1:1772254/1‑150 (MQ=255)

                                                                                              tCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcc                                                         >  2:1776488/1‑150 (MQ=255)

                                                                                                gaaaTGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcctt                                                       >  1:704526/3‑150 (MQ=255)

                                                                                                 tAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttccttc                                                      >  1:913886/1‑150 (MQ=255)

                                                                                                        tGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCga                                               <  1:967828/150‑1 (MQ=255)

                                                                                                           cGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcc                                                         <  2:1616581/137‑1 (MQ=255)

                                                                                                           cGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcc                                                         >  1:1616581/1‑137 (MQ=255)

                                                                                                            gAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAAt                                           >  1:1257540/1‑150 (MQ=255)

                                                                                                            gAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAAt                                           >  2:1361428/1‑150 (MQ=255)

                                                                                                                cacaGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCAc                                        >  1:359369/1‑149 (MQ=255)

                                                                                                                cacaGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCAc                                        <  2:359369/149‑1 (MQ=255)

                                                                                                                    gCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGaca                                   >  1:1412807/1‑150 (MQ=255)

                                                                                                                          tcttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGa                                                                          >  1:111466/1‑105 (MQ=255)

                                                                                                                           cttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTg                            <  2:2304814/150‑1 (MQ=255)

                                                                                                                            ttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGa                                                                                                  <  1:197950/79‑1 (MQ=255)

                                                                                                                            ttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGa                                                                                                  >  2:197950/1‑79 (MQ=255)

                                                                                                                            ttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTgg                           >  2:112494/1‑150 (MQ=255)

                                                                                                                               tcGTCAGCCACGGCCTCGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTCACCTGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGc                        <  2:215039/150‑1 (MQ=255)

                                                                                                                                cGTCAGCCACGGCCTGGCGACCGGTGCCAAAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGAATGGCTTACTCCTTGTGGTAGGCGGTGACGCGCTCGTCCTCTTCCTTCGCGCCGAGAATCACCGACACGCGCTGGTGCa                       <  2:352977/150‑1 (MQ=255)

                                                                                                                                 gTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCga                                               <  1:578669/125‑1 (MQ=255)

                                                                                                                                 gTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCga                                               >  2:578669/1‑125 (MQ=255)

                                                                                                                                  tCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAgg                     >  1:1125490/1‑150 (MQ=255)

                                                                                                                                    aGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTg                                                                           >  1:490696/1‑94 (MQ=255)

                                                                                                                                      ccACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGa                                     >  2:764851/1‑130 (MQ=255)

                                                                                                                                      ccACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGa                                     <  1:764851/130‑1 (MQ=255)

                                                                                                                                       cACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTc                <  2:1917160/150‑1 (MQ=255)

                                                                                                                                        aCGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCt               >  2:1973530/1‑150 (MQ=255)

                                                                                                                                         cGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTg              <  1:1776488/150‑1 (MQ=255)

                                                                                                                                         cGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTg              <  1:1785235/150‑1 (MQ=255)

                                                                                                                                          ggCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTgg             <  2:1805995/150‑1 (MQ=255)

                                                                                                                                            ccTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCt           <  2:2149883/150‑1 (MQ=255)

                                                                                                                                                ggCACTGGTGCCCCAACCGAACCCCCAGTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTCCTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGAt       <  2:1950065/150‑1 (MQ=255)

                                                                                                                                                ggCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGAt       <  2:1646099/150‑1 (MQ=255)

                                                                                                                                                     tGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGATGTCGa  <  2:1827060/150‑1 (MQ=255)

GCCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGATGTCGA  >  NC_002947/5742009‑5742307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`