BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,742,159	G→A	5.1%	T17T (ACC→ACT)	PP_5039 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,742,159	0	G	A	5.1%	325.5 / 4.5	110	T17T (ACC→ACT)	PP_5039	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (48/55); new base A (2/4); total (50/60)
Fisher's exact test for biased strand distribution p-value = 6.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 116 total aligned reads displayed.

CCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGATGTCGA  >  NC_002947/5742010‑5742307

cccAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTg                                                                                                                                                      <  2:587157/150‑1 (MQ=255)

 ccagccagCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     >  1:2063385/1‑150 (MQ=255)

 ccagccagCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     >  2:108607/1‑150 (MQ=255)

    gccagccCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGc                                                                                                                                                  <  2:2063385/150‑1 (MQ=255)

        gccCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccag                                                                                                                                              <  2:2380448/150‑3 (MQ=255)

          ccTGCGGGGTTTGCTGCCACTCTTCGAGCCCACACGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAAc                                                                                                                                            <  2:493704/150‑1 (MQ=255)

            tGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCg                                                                                                                                          >  1:1068448/1‑150 (MQ=255)

              cGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGaa                                                                                                                                        <  2:1180951/150‑1 (MQ=255)

              cGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGaa                                                                                                                                        <  1:431904/150‑1 (MQ=255)

                 ggTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     >  2:1284055/1‑150 (MQ=255)

                 ggTTTGCTGACACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     >  1:667458/1‑150 (MQ=255)

                 ggTTTGCTACCACTCTTCGAGCCCACCCGCCAGGGCGTGTTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     >  2:1494447/1‑150 (MQ=255)

                    ttGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGGGAGTGCACTGGTGCCCCAACCGAAccacca                                                                                                                                  <  1:64523/150‑1 (MQ=255)

                      gctgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCAtt                                                                                                                                <  1:318359/150‑1 (MQ=255)

                       ctgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACCGCGTCCACGCCTCCGCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTc                                                                                                                               >  2:1270695/1‑150 (MQ=255)

                        tgcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTcc                                                                                                                              >  1:1691256/1‑150 (MQ=255)

                         gcCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCa                                                                                                                             <  1:2263667/150‑1 (MQ=255)

                           cACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGc                                                                                                                           >  2:1795724/1‑150 (MQ=255)

                             ctctTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccag                                                                                                                                              >  2:668553/1‑127 (MQ=255)

                             ctctTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccag                                                                                                                                              <  1:668553/129‑3 (MQ=255)

                              tctTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAAc                                                                                                                        >  1:49679/1‑150 (MQ=255)

                              tctTCGAGCCCACCCGCCAGGGCGGGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAAc                                                                                                                        >  1:1881325/1‑150 (MQ=255)

                                 tCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGc                                                                                                                     >  2:1538810/1‑150 (MQ=255)

                                   gAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTg                                                                                                                   >  1:2137073/1‑150 (MQ=255)

                                      cccACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCa                                                                                                                >  2:2222561/1‑150 (MQ=255)

                                       ccACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAAcc                                                                                                                                           <  2:1965506/122‑1 (MQ=255)

                                       ccACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAAcc                                                                                                                                           >  1:1965506/1‑122 (MQ=255)

                                       ccACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCaa                                                                                                               <  1:892623/150‑1 (MQ=255)

                                        cACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     <  2:110491/111‑1 (MQ=255)

                                        cACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTgg                                                                                                                                                     >  1:110491/1‑111 (MQ=255)

                                        cACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAg                                                                                                              >  2:2284582/1‑150 (MQ=255)

                                         aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             >  1:352977/1‑150 (MQ=255)

                                         aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             >  1:2149883/1‑150 (MQ=255)

                                         aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             >  2:571119/1‑150 (MQ=255)

                                         aCCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAgg                                                                                                             <  1:439696/150‑1 (MQ=255)

                                              ccAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATGCCAGCAACGGCTGCCAAGGTGCGa                                                                                                        <  2:419214/150‑1 (MQ=255)

                                                 gggCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCa                                                                                                     >  1:952139/1‑150 (MQ=255)

                                                    cGTGCTCGACCAGGTCGCCAAACAGTGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGa                                                                                                  >  2:866373/1‑150 (MQ=255)

                                                      tGCTCGACCAGGTCGCCAAACAGTGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACt                                                                                                <  1:866373/150‑1 (MQ=255)

                                                       gCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAg                                                                                                              >  1:1470364/1‑135 (MQ=255)

                                                       gCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAg                                                                                                              <  2:1470364/135‑1 (MQ=255)

                                                       gCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccaggc                                                                                                                                            <  1:1477720/105‑5 (MQ=255)

                                                       gCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCAGTGcccaggc                                                                                                                                            >  2:1477720/1‑101 (MQ=255)

                                                            aCCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCGCGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGAc                                                                                                 >  1:1621091/1‑143 (MQ=255)

                                                            aCCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTcc                                                                                          <  2:2385013/150‑1 (MQ=255)

                                                             ccAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCaa                                                                                                                                             >  2:554802/1‑98 (MQ=255)

                                                              cAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCCACGGCTGCCAAGGTGCGAGCATGACTTACTCCtt                                                                                        <  2:760728/150‑1 (MQ=255)

                                                               aGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTtg                                                                                       >  2:967828/1‑150 (MQ=255)

                                                               aGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCGCGCAAGGTGCGAGCATGACTTACTCCTtg                                                                                       <  1:1270695/150‑1 (MQ=255)

                                                                 gTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTtgtg                                                                                     <  1:571119/150‑1 (MQ=255)

                                                                    gcaaaaCAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     >  2:2088873/4‑99 (MQ=255)

                                                                    gcaaaaCAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAacca                                                                                                                                     <  1:2088873/96‑1 (MQ=255)

                                                                     ccAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTcc                                                                                          <  1:2023336/141‑1 (MQ=255)

                                                                        aaCAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCg                                                                              <  2:667458/150‑1 (MQ=255)

                                                                         aCAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCgg                                                                             <  1:2336822/150‑1 (MQ=255)

                                                                          cAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGt                                                                            <  1:1596319/150‑1 (MQ=255)

                                                                          cAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATCCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGt                                                                            <  1:2243112/150‑1 (MQ=255)

                                                                           aGCGCATGGGCGTTGGCAGCGTAATGCTTCCCGCACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGGAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTg                                                                           <  1:945383/150‑1 (MQ=255)

                                                                            gcgcATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGa                                                                          <  1:2284582/150‑1 (MQ=255)

                                                                                  gggCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGt                                                                                                            <  2:360164/110‑1 (MQ=255)

                                                                                  gggCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGt                                                                                                            >  1:360164/1‑110 (MQ=255)

                                                                                   ggCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACCCGTTCTCTAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTc                                                                   <  1:2222561/150‑1 (MQ=255)

                                                                                           cATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTctt                                                           >  1:1772254/1‑150 (MQ=255)

                                                                                             tCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcc                                                         >  2:1776488/1‑150 (MQ=255)

                                                                                               gaaaTGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcctt                                                       >  1:704526/3‑150 (MQ=255)

                                                                                                tAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttccttc                                                      >  1:913886/1‑150 (MQ=255)

                                                                                                    gCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGc                                                  <  1:1284055/150‑1 (MQ=255)

                                                                                                      ttGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCg                                                >  2:1948340/1‑150 (MQ=255)

                                                                                                       tGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCga                                               <  1:967828/150‑1 (MQ=255)

                                                                                                          cGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcc                                                         >  1:1616581/1‑137 (MQ=255)

                                                                                                          cGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTcttcc                                                         <  2:1616581/137‑1 (MQ=255)

                                                                                                           gAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAAt                                           >  2:1361428/1‑150 (MQ=255)

                                                                                                           gAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAAt                                           >  1:1257540/1‑150 (MQ=255)

                                                                                                               cacaGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCAc                                        <  2:359369/149‑1 (MQ=255)

                                                                                                                   gCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGaca                                   >  1:1412807/1‑150 (MQ=255)

                                                                                                                         tcttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGa                                                                          <  2:111466/105‑1 (MQ=255)

                                                                                                                         tcttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGa                                                                          >  1:111466/1‑105 (MQ=255)

                                                                                                                          cttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTg                            <  2:1772254/150‑1 (MQ=255)

                                                                                                                          cttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTg                            <  2:2304814/150‑1 (MQ=255)

                                                                                                                           ttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGa                                                                                                  >  2:197950/1‑79 (MQ=255)

                                                                                                                           ttctCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTgg                           >  2:112494/1‑150 (MQ=255)

                                                                                                                              tcGTCAGCCACGGCCTCGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTCACCTGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGc                        <  2:215039/150‑1 (MQ=255)

                                                                                                                               cGTCAGCCACGGCCTGGCGACCGGTGCCAAAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGAATGGCTTACTCCTTGTGGTAGGCGGTGACGCGCTCGTCCTCTTCCTTCGCGCCGAGAATCACCGACACGCGCTGGTGCa                       <  2:352977/150‑1 (MQ=255)

                                                                                                                                gTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCga                                               <  1:578669/125‑1 (MQ=255)

                                                                                                                                gTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCga                                               >  2:578669/1‑125 (MQ=255)

                                                                                                                                gTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAg                      <  1:2182103/150‑1 (MQ=255)

                                                                                                                                gTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAg                      <  1:484017/150‑1 (MQ=255)

                                                                                                                                 tCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAgg                     >  1:1125490/1‑150 (MQ=255)

                                                                                                                                   aGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTg                                                                           <  2:490696/94‑1 (MQ=255)

                                                                                                                                   aGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTg                                                                           >  1:490696/1‑94 (MQ=255)

                                                                                                                                     ccACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGa                                     >  2:764851/1‑130 (MQ=255)

                                                                                                                                      cACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTc                <  2:1917160/150‑1 (MQ=255)

                                                                                                                                       aCGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCt               >  2:1973530/1‑150 (MQ=255)

                                                                                                                                        cGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTg              <  1:1785235/150‑1 (MQ=255)

                                                                                                                                        cGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTg              <  1:1776488/150‑1 (MQ=255)

                                                                                                                                         ggCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTgg             <  2:1805995/150‑1 (MQ=255)

                                                                                                                                           ccTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCt           <  2:2149883/150‑1 (MQ=255)

                                                                                                                                               ggCACTGGTGCCCCAACCGAACCCCCAGTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTCCTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGAt       <  2:1950065/150‑1 (MQ=255)

                                                                                                                                               ggCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGAt       <  2:1646099/150‑1 (MQ=255)

                                                                                                                                                    tGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGATGTCGa  <  2:1827060/150‑1 (MQ=255)

CCCAGCCAGCCCTGCGGGGTTTGCTGCCACTCTTCGAGCCCACCCGCCAGGGCGTGCTCGACCAGGTCGCCAAACAGCGCATGGGCGTCGGCATCGTAATGCTTGCCGAACCACAGCGTGCTCTTCTCGTCAGCCACGGCCTGGGCACTGGTGCCCCAACCGAACCACCATTCCAGCAACGGCTGCCAAGGTGCGAGCATGACTTACTCCTTGTGGTAAGCGGTGACGCGCTCGACCTCTTCCTTCGAGCCGAGAATCACCGACACGCGCTGGTGCAGGCTTTCTGGCTTGATGTCGA  >  NC_002947/5742010‑5742307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`