| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,827,774 | G→C | 8.3% | A211P (GCC→CCC) | mtgA → | monofunctional biosynthetic peptidoglycan transglycosylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,827,774 | 0 | G | C | 8.3% | 357.8 / 16.0 | 116 | A211P (GCC→CCC) | mtgA | monofunctional biosynthetic peptidoglycan transglycosylase |
| Reads supporting (aligned to +/- strand): ref base G (62/43); new base C (5/5); total (67/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 127 total aligned reads displayed.
GTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGG > NC_002947/5827627‑5827922 | ttGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCt < 2:1193714/150‑1 (MQ=255) tGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTg > 1:1432855/1‑150 (MQ=255) ggTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTgg > 1:1521274/1‑150 (MQ=255) ggTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGCCCGGCTgg < 1:193466/150‑1 (MQ=255) gTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCAGCTGTCACGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGa > 1:2243708/1‑150 (MQ=255) cccAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCATACGTGGGCAGCCGGGCCGGCTGGAttg > 1:753217/1‑149 (MQ=255) cAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGc < 2:1606863/150‑1 (MQ=255) aGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCCGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGGGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCa > 2:555726/1‑150 (MQ=255) cgcgTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGa < 1:1583292/150‑1 (MQ=255) cgcgTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTCCTGCAAATCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGa < 1:292804/150‑1 (MQ=255) gcgTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAg < 2:1521274/150‑1 (MQ=255) gTTATCACTTTGGCGTCGACGCCAGTCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGcc > 1:948074/1‑150 (MQ=255) gTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGcc > 1:1561292/1‑150 (MQ=255) ttATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCa > 1:2028487/1‑150 (MQ=255) ttATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCAGGGCCGGCTGGATTCGCCGGCAGATGAGCCa > 2:1133948/1‑150 (MQ=255) cACTTTGGCGTCGACGCCAGCCGGCTCAGCAGACAGCAAGCAGCGCAGCGGGCAGCGGTGATGCCAAGCCCACTAAAAAG‑‑‑CCGCCAACTTCGATCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTAGCCGACAGATGAGCCAGCTg > 1:551458/1‑150 (MQ=255) tttGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgggc > 2:1497440/1‑150 (MQ=255) tttGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgggc < 1:2387594/150‑1 (MQ=255) gTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAgccgggccgg > 1:1184713/1‑113 (MQ=255) gTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAgccgggccgg < 2:1184713/113‑1 (MQ=255) cAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCt < 2:1537053/150‑1 (MQ=255) aGCCGGCTCAGCCGCCAGCGGGCAGCGCAGCTGGCAGCGGTGCTGCCAATCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCt < 2:619361/106‑1 (MQ=255) aGCCGGCTCAGCCGCCAGCGGGCAGCGCAGCTGGCAGCGGTGCTGCCAATCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCt > 1:619361/1‑106 (MQ=255) aGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCt > 2:2272036/1‑131 (MQ=255) aGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCt < 1:2272036/131‑1 (MQ=255) aGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGGTACCTg > 1:764866/1‑150 (MQ=255) gCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGa < 1:1136774/150‑1 (MQ=255) gCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCa > 2:2212982/1‑150 (MQ=255) tCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGc > 1:2079817/1‑150 (MQ=255) tCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCCCGCCCAGCtgg > 2:2301517/1‑138 (MQ=255) tCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGCCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGCGCCCGCCCAGCtgg < 1:2301517/140‑3 (MQ=255) tCAGCCGCCAGCAAGCAACTCAGCGGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGc > 2:2332008/1‑150 (MQ=255) cgccAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGAc > 1:1446653/1‑150 (MQ=255) agcagGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGCGCACGGTGGGCGGGCCCAGCTACCTGATGCAGCTGGActcct > 1:633222/1‑150 (MQ=255) gcaggcagCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGActcctc < 2:2258911/150‑1 (MQ=255) caggcagCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACtcctcc > 2:1997007/1‑150 (MQ=255) caggcagCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACtcctcc < 2:1561292/150‑1 (MQ=255) tggcagCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCa < 1:1602927/149‑1 (MQ=255) gcagcgcagcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGc < 1:859693/133‑1 (MQ=255) gcagcgcagcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGa > 1:1183490/1‑150 (MQ=255) agcgcagcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAg < 1:1714068/102‑1 (MQ=255) agcgcagcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAg > 2:1714068/1‑102 (MQ=255) gcagcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCt > 2:788356/1‑150 (MQ=255) agcTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgggc < 1:1586828/107‑1 (MQ=255) ttGGCAGCACCGCTGCCAAGCCCAACCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCATCCGGGCCGGCTGGATTAGCCGGCAGATGAGCCAGCTGGGCGGGCCCCGCTGGCTGATGCAGCTGGCCTCCTCCCGGAAGCCTTgt > 2:136034/2‑149 (MQ=255) gggCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGGGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGaa < 2:1141608/149‑1 (MQ=255) cAGCGGTGCTGCCCAGCTACCTC‑AGTGCGAGTCGCAGT‑‑GGACCGAATTCGTACGGGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGc < 2:633222/150‑1 (MQ=255) cAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGc < 1:2212982/150‑1 (MQ=255) gCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAg < 2:1443984/150‑1 (MQ=255) gTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCa > 1:72947/1‑80 (MQ=255) gTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCa < 2:72947/80‑1 (MQ=255) tgctgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAggccc > 1:1127452/1‑150 (MQ=255) gctgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGTGCCCAGCTACCTGATGCAGCTCGACTCCTCCAGAAAGCTTTGAATGCAggcccg < 2:581323/150‑1 (MQ=255) gctgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCCCGCCCAGCtggc > 1:604317/1‑104 (MQ=255) tgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCGGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGa < 1:1395284/128‑1 (MQ=255) tgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCGGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGa > 2:1395284/1‑128 (MQ=255) tgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAggcccggc > 2:2041124/1‑150 (MQ=255) tgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAggcccggc > 1:2312590/1‑150 (MQ=255) tgcCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGATGCGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAggcccggc < 2:822673/150‑1 (MQ=255) ccAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGAt > 2:2330516/1‑77 (MQ=255) ccAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGAt < 1:2330516/77‑1 (MQ=255) ccAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGAAGATGGGCCAGCTTGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAggcccggccc > 2:2000792/1‑150 (MQ=255) gCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTgggc > 2:2371804/1‑86 (MQ=255) ccAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTcgc > 2:1052343/1‑150 (MQ=255) cAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAGAGCTTTGAATGCAGGCCCGGCCCTTTcgcg < 1:1270885/150‑1 (MQ=255) aaTCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCCTTCGCgg < 1:2041124/150‑1 (MQ=255) aaTCAAGTG‑GAGTGCCAGC‑‑CGACCGACTGCCACGGCTGCTTCCCGGAATGGCTGGAGTCGCCGGCAGATGACCCCGTGGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCgg < 1:541016/150‑1 (MQ=255) tCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAg < 2:1181865/131‑1 (MQ=255) tG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAACTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAAGCCCGGCCCTTTCGCGGGTAAAcc > 1:1356479/1‑150 (MQ=255) gTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGTCCCTTTCGCGGGGAACCCCGCt > 2:837317/1‑150 (MQ=255) gTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCCCGCCCAGCtggc < 1:1500668/84‑4 (MQ=255) cAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTa > 1:1016933/1‑150 (MQ=255) aGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTAc > 2:1517162/1‑150 (MQ=255) aGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTAc > 2:559960/1‑150 (MQ=255) gC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACg > 2:1997748/1‑150 (MQ=255) gC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACg < 1:555726/150‑1 (MQ=255) ctgaccgaGTGCCTACGGGGCCGGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACgg < 2:753217/148‑1 (MQ=255) cgaccgaGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCTCTTCGCGGGTAAGCCCGCTCCTAcagg > 1:750339/1‑147 (MQ=255) tGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCa > 1:2238049/1‑150 (MQ=255) tACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATccc > 2:361638/1‑150 (MQ=255) aCGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATcccc < 2:1387238/150‑1 (MQ=255) gTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAg < 1:1003511/99‑1 (MQ=255) gTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAg > 2:1003511/1‑99 (MQ=255) tGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGc > 1:2235210/1‑150 (MQ=255) atccAGCCGGCCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCATTCGCGGGTAAACCCGc < 2:1206247/122‑1 (MQ=255) atccAGCCGGCCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCATTCGCGGGTAAACCCGc > 1:1206247/3‑124 (MQ=255) tccAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCggg > 1:599244/2‑114 (MQ=255) tccAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCggg < 2:599244/113‑1 (MQ=255) tccAGCCGGCCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGcc < 1:2409709/49‑1 (MQ=38) tccAGCCGGCCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTg > 1:304368/2‑69 (MQ=255) tccAGCCGGCCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTg < 2:304368/68‑1 (MQ=255) tccAGCCGGCCAGGCTGGATTAGGCGCCAGGTGAGCCAGCTGGGCGGGCGCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGcct > 2:398501/2‑150 (MQ=38) ccAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGcctc > 2:1596897/1‑150 (MQ=255) cAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAAc < 1:1812510/117‑1 (MQ=255) cAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAAc > 2:1812510/1‑117 (MQ=255) gccgggccggCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTg > 1:1925773/1‑65 (MQ=255) ggccggCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCgg < 1:1435299/150‑1 (MQ=255) ggccggCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCgg < 2:1439456/150‑1 (MQ=255) ggccggCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCgg < 2:1446653/150‑1 (MQ=255) ggccggCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCgg < 1:837317/150‑1 (MQ=255) | GTGTTTGGTGCCCAGGCAGCGGCGCGTTATCACTTTGGCGTCGACGCCAGCCGGCTCAGCCGCCAGCAGGCAGCGCAGCTGGCAGCGGTGCTGCCAAGCCCAATCAAGTG‑GAGTGCCAGC‑‑CGACCGAGTGCCTACGTGGCCAGCCGGGCCGGCTGGATTCGCCGGCAGATGAGCCAGCTGGGCGGGCCCAGCTACCTGATGCAGCTGGACTCCTCCAGAAAGCTTTGAATGCAGGCCCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGG > NC_002947/5827627‑5827922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |